CmoCh17G008110 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G008110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr17: 7717095 .. 7718095 (-)
RNA-Seq ExpressionCmoCh17G008110
SyntenyCmoCh17G008110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTATACTTGTCTCCTTTTCTACAGCAAGCCATTTGATAAGTAATCTCTTACTTTTTTATGCTTTCTTGGGGTCTAATTTAATCTATGTTTGATACGAGTAGAGATGCAAGTTGATAACTGAAATAAATTAACTTATTGTGTTATATCTATACTGTGATCAACGCTGCTGTTCGTTTCAGTTATTCTGAAAACCGGATTAAAGTAAATTTTCTATATGTTGCAATTGCCATGGTGTTCTCTGACCTTCTCTTACTTTTGATCTCAAGCATTACATTCATCCATATTGTTGTACACTTTGTTTTGTTTTTCTCTCTTGACAATGTAGGTGAAACACAGTACAGGCCTGCTGTTGGGGTGGCTAAAGATCTTTTCAGGAGGAGAGGGGCAATGGTTGCGTTGCTCGTTTCTTGTCCCCATCAATCGTCGTAGCCTATTTGGATTGACTTTTTAAGTGCTTAAAATCATTGTTTGAAACGCCTAAAAAGTCGATCCAACCAGGCCTTTTAAGTGATGTATATCAAATATCTAACATTTTTGTTTGTGAACAGAGATAGCTTTGATCTTTAATACTCTTCTCTGATCAGTTGACAAAGGACCTGGGTAAGGAGAACAATAGTAGAGCTAAACAGGCCAAAATCGTCACGGCTATTCGATGTTGGTGCTTTTCTAACTCTTAGCATTGCATTTGTCATTCTTAGGAAATGCTTTGGAAGATTGAAAGTTAAACCTCTTTGACATTAATGATTTGAGTTTTTTCAACCTATTATCAGTTTATGAAGCAGCTGAGCAACTCAAAATGAAGATTGAGCTTCAAAACTTTCAGATTGTTGCACGCAAGCTTCAAGCCGGTGTCAGCGGCTGATGCTGGTAAAGGATAGGATTCTACCCTCGTGCTTTTTCCTAGGCAAAGTGCTTCCTTCTTCACCACTGCCTATCAATTTCATAGGTACAAAATCTCATACTTAAAATTTTGAAACTGTTGGAGTCTTAAGACAT

mRNA sequence

ATGGATTATACTTGTCTCCTTTTCTACAGCAAGCCATTTGATAATTATTCTGAAAACCGGATTAAAGTAAATTTTCTATATGTTGCAATTGCCATGGTGTTCTCTGACCTTCTCTTACTTTTGATCTCAAGCATTACATTCATCCATATTGTTGTACACTTTGTTTTGTTTTTCTCTCTTGACAATGTAGGTGAAACACAGTACAGGCCTGCTGTTGGGGTGGCTAAAGATCTTTTCAGGAGGAGAGGGGCAATGTTGACAAAGGACCTGGGTAAGGAGAACAATAGTAGAGCTAAACAGGCCAAAATCGTCACGGCTATTCGATTTTATGAAGCAGCTGAGCAACTCAAAATGAAGATTGAGCTTCAAAACTTTCAGATTGTTGCACGCAAGCTTCAAGCCGGTGTCAGCGGCTGATGCTGGTAAAGGATAGGATTCTACCCTCGTGCTTTTTCCTAGGCAAAGTGCTTCCTTCTTCACCACTGCCTATCAATTTCATAGGTACAAAATCTCATACTTAAAATTTTGAAACTGTTGGAGTCTTAAGACAT

Coding sequence (CDS)

ATGGATTATACTTGTCTCCTTTTCTACAGCAAGCCATTTGATAATTATTCTGAAAACCGGATTAAAGTAAATTTTCTATATGTTGCAATTGCCATGGTGTTCTCTGACCTTCTCTTACTTTTGATCTCAAGCATTACATTCATCCATATTGTTGTACACTTTGTTTTGTTTTTCTCTCTTGACAATGTAGGTGAAACACAGTACAGGCCTGCTGTTGGGGTGGCTAAAGATCTTTTCAGGAGGAGAGGGGCAATGTTGACAAAGGACCTGGGTAAGGAGAACAATAGTAGAGCTAAACAGGCCAAAATCGTCACGGCTATTCGATTTTATGAAGCAGCTGAGCAACTCAAAATGAAGATTGAGCTTCAAAACTTTCAGATTGTTGCACGCAAGCTTCAAGCCGGTGTCAGCGGCTGA

Protein sequence

MDYTCLLFYSKPFDNYSENRIKVNFLYVAIAMVFSDLLLLLISSITFIHIVVHFVLFFSLDNVGETQYRPAVGVAKDLFRRRGAMLTKDLGKENNSRAKQAKIVTAIRFYEAAEQLKMKIELQNFQIVARKLQAGVSG
Homology
[Close]
BLAST of CmoCh17G008110 vs. NCBI nr
Match: KAG6575578.1 (DUF724 domain-containing protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-17
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 86  LTKDLGKENNSRAKQAKIVTAIRFYEAAEQLKMKIELQNFQIVARKLQAGVSG 139
           LTKDLGK+NNSRAKQAKIVTAIRFYEAAEQLKMKIELQNFQIVARKLQAGVSG
Sbjct: 363 LTKDLGKKNNSRAKQAKIVTAIRFYEAAEQLKMKIELQNFQIVARKLQAGVSG 415

[Close]
BLAST of CmoCh17G008110 vs. NCBI nr
Match: KAG7014119.1 (DUF724 domain-containing protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 86  LTKDLGKENNSRAKQAKIVTAIRFYEAAEQLKMKIELQNFQIVARKLQAGVS 138
           LTKDLGK+NNSRAKQAKIVTAIRFYEAAEQLKMKIELQNFQIVARKLQAGVS
Sbjct: 433 LTKDLGKKNNSRAKQAKIVTAIRFYEAAEQLKMKIELQNFQIVARKLQAGVS 484

The following BLAST results are available for this feature:
BLAST of CmoCh17G008110 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G008110 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G008110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6575578.12.0e-1798.11DUF724 domain-containing protein 3, partial [Cucurbita argyrosperma subsp. soror... [more]
KAG7014119.11.3e-1698.08DUF724 domain-containing protein 3, partial [Cucurbita argyrosperma subsp. argyr... [more]
BLAST of CmoCh17G008110 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G008110.1CmoCh17G008110.1mRNA