CmoCh17G008090 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G008090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionHistone H2A
LocationCmo_Chr17: 7710879 .. 7713917 (-)
RNA-Seq ExpressionCmoCh17G008090
SyntenyCmoCh17G008090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGGGGGGAGGGTACACTACTTTTATCGACCTCGCTCGCCGTCGCGCCCCTTATCGGTTTCTTTCTCTTTCTCTTCCATTGATCCGTCGTCCAAACTCCTCCTTCACTGAAAGCGAGAGGAACCCTAATTTTTGGGCTGCAAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGACAAAGATAAAAAGAAACCTGTCTCTCGCTCTTCCCGCGCTGGTCTCCAGGTTTCCCTCTTTTATACACTTCAACACTTGTATTCTTCCATCCTTTTGGTGTCTCTTGTATGGATCTGTATTTATGATGCTTGTTTGAGGTCCATGCCTGTCAATTTCAAACGCATAAATTTTCCAATTTAGACGCGTTTCGTGGTTTTCAAGCCTCTGTGTTTAGACATTTGGAGTGGAGTTGTTTTAAATTTTCGTGTTTCGAAGTTTATATTTGTTTGTACTTGTTTCTTATTTTCGTCTCTTTTGATGAGTATGGTGAGTTCTAAGTTAGTTTCGTCTGTATGAGATCGTCTGTTGTTGAATGTTTAGGATGTGTTCGTTTGAGAATCTCTAGAGGTGTAGCTCGAAGTCCTTCTCTTTGATGTTAGAAGTAGGTGCGTGCCTTTGGGTTTTTAGTATTTTGAATGTGGTTCTGTGATCCTCCTTTGAGCCTGTTTCTTTTGAGAACCTCGGTTTGTCAATGTTCTTCGGTGGTTGGAGAAATTGTCCTGCGGTAATGACCTGTTTGACTTAGTCTGATGTTGTTGCACTTATTAGTTCATAACATTGGTAGTGGGTATTAGCTCATACTTCCCTCTGTGCTGTCTTTTTCTTCTTTGTTTTGTAGCTCCTCTTTGGTTTAAGCTTTTGTGTTCATTCAAAATAAGGGTGGAACATGGATTATATGTAGACAACGTATGTGTCATGGTATTAGAAAATGTGGTGGATTTTATTAGTGTAGAACACAAGCTTTCTCTCAATTAGATGAGGAAGGTCAAGGTCTAAATAGTGTCTGTTGAACTATTACGAGACACTTCTGTTTTTCTTTTTTAATGAAGTCGAGTATTAAGAGGATTTCAAAGTATGTTCAATGTTTTGCAGAAAGTTTGTTAGATTAGGGGATGGGGCTACTTTTTCTTCGGCAGTAATTGCTGGCATAGAACATATTACAAGTCTTTCATGCTACATTTTTTCTTCGCTAAATGACCTCTTGGGAGTTGTCGGAATATGTGTGAACCAAGTGACTGACGAAGCTGTGGAAAGCTATGGGAATCGAAACTTGTATCTTTCGAAATAGATTGGAGATGCAAGCTGTTTTATTCAATATTCTTCTACACTGCTTCATCTTTCGAAATAGATTGAAAATATTATCAGGAATTGATTTTAAATGGGAAAGTCTATATCTTGATGGAGAAAATTGTCTCCCACTCCTTTGGACCTGGTTCAACTTGGAATTGGAATTCAGTGTTCGAAAAATATGAACTTCACTTGACATGGAATTTTACAATTGATGACTTACCCATCCTTTCTTCACCCTTAGGCTTTCATGTATAGCATTATCTAGATGTAAGAATTTCGGAGATTGGAGAAGTCTGGGAATTTCAACTTTCTTTCGGTAGGTTGATAATCAAGTGCCTATTGAAGGGTCTTGAGCATGTACAGCCCTTTCTCCCCTGAACCTTTTGTTTTCAAGCTACCGAATAATCCCAACCCCTGGGCTATTTCCTGCCTTTGTAGTGTCTGTTTAGGAATTGTTAGAGTGAAAACCACGATCATGTTGACTCAGATAGTGCTTTTCTATGAACTCATTGTGAGGGAATATTAGATTCTTGTATTTTTTTCTACTACATCAATGAGGAGTCTCTTTCTTCGTTCCTGTTGAGGCTCTCGTTCTGTTTTGCTGGTAATGTCACACTCCAATTAGTAAGGAGCTAGCGTTGCATGCTACATATATACTATATCTATCTTGTTATTCCTTTACTGAGTTTTGCCACTCATTTTTTCTTGCTTTCCCTTTGTTTTCTTCTTAAATCAATTTTTTTCCGTCTGATCAGTACACCACTTATGATGGACTGGGTGAATAAAATGTCACTGGTAAAGATGAAGATGTGGTGTTTGATAAGTTTGTAAGTAGAAACTGGTGCGCTTGTAGGTGCCTGAATTCTCTAAGCCCTTCTTGCTGTATATCTGCTTGTCATTTTCCGTGTACATTGCGGTTTTGATGTTTTCTTTTCAATATTGTTGATAGTTTCTTCTGCTTTGCATTAGTATATTGCCAAAATGTTGACACCAAAGTTAACAATCATAAGGCATAACTGCTGAAAGTGTTCTTGAGATGACTTTTTAGTATTGGGGTCTTCTTATTAAAATTCACTTTTTTCTCATTGTTGGGTATGGTGTTGGATGGGTGGATGATACAGTTTCCAGTGGGAAGGGTTCACCGGCAACTAAAGACAAGGGTTGCCGCAAATGGACGAGTCGGGGCTACAGCAGCCGTATACACAGCAGCTATCTTGGAGTACCTGACTGCAGAGGTGTTGGAGCTGGCCGGAAATGCTAGCAAGGATCTGAAGGTGAAGCGTATAACACCAAGGCATCTGCAGCTCGCAATAAGAGGAGATGAAGAACTGGACACACTCATTAAAGGAACCATCGCTGGCGGAGGAGTCATCCCTCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAGAGATTATTAGTATGCCTTTTTATTTTTCATCTTACAGCTTAGTTGAGTGGTTGTCATTGTCATATGCTCAGTCCTGTCACTGTCTGGTCCAATTTAGTAGCAAGGGGAGAAGATATTTCTCGTTTTGTAAGGTTAAAGAATGGGAAATCCCTTTTATTTTTAGTCATTTCTGACTTCGGGTTGCATCGATCGACACTGCCAATGTAATTGACGACTCACATTATTTGTCTACTTACTTAACATAACATCTGCCCAATTCATTGCTGGAAGAAGAAGATAAGGAATTAAGTGAAGACAGTTTGGAAA

mRNA sequence

TGGGGGGGGAGGGTACACTACTTTTATCGACCTCGCTCGCCGTCGCGCCCCTTATCGGTTTCTTTCTCTTTCTCTTCCATTGATCCGTCGTCCAAACTCCTCCTTCACTGAAAGCGAGAGGAACCCTAATTTTTGGGCTGCAAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGACAAAGATAAAAAGAAACCTGTCTCTCGCTCTTCCCGCGCTGGTCTCCAGTTTCCAGTGGGAAGGGTTCACCGGCAACTAAAGACAAGGGTTGCCGCAAATGGACGAGTCGGGGCTACAGCAGCCGTATACACAGCAGCTATCTTGGAGTACCTGACTGCAGAGGTGTTGGAGCTGGCCGGAAATGCTAGCAAGGATCTGAAGGTGAAGCGTATAACACCAAGGCATCTGCAGCTCGCAATAAGAGGAGATGAAGAACTGGACACACTCATTAAAGGAACCATCGCTGGCGGAGGAGTCATCCCTCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAGAGATTATTAGTATGCCTTTTTATTTTTCATCTTACAGCTTAGTTGAGTGGTTGTCATTGTCATATGCTCAGTCCTGTCACTGTCTGGTCCAATTTAGTAGCAAGGGGAGAAGATATTTCTCGTTTTGTAAGGTTAAAGAATGGGAAATCCCTTTTATTTTTAGTCATTTCTGACTTCGGGTTGCATCGATCGACACTGCCAATGTAATTGACGACTCACATTATTTGTCTACTTACTTAACATAACATCTGCCCAATTCATTGCTGGAAGAAGAAGATAAGGAATTAAGTGAAGACAGTTTGGAAA

Coding sequence (CDS)

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGACAAAGATAAAAAGAAACCTGTCTCTCGCTCTTCCCGCGCTGGTCTCCAGTTTCCAGTGGGAAGGGTTCACCGGCAACTAAAGACAAGGGTTGCCGCAAATGGACGAGTCGGGGCTACAGCAGCCGTATACACAGCAGCTATCTTGGAGTACCTGACTGCAGAGGTGTTGGAGCTGGCCGGAAATGCTAGCAAGGATCTGAAGGTGAAGCGTATAACACCAAGGCATCTGCAGCTCGCAATAAGAGGAGATGAAGAACTGGACACACTCATTAAAGGAACCATCGCTGGCGGAGGAGTCATCCCTCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG

Protein sequence

MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Homology
[Close]
BLAST of CmoCh17G008090 vs. ExPASy Swiss-Prot
Match: Q9C944 (Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-60
Identity = 121/134 (90.30%), Postives = 129/134 (96.27%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQFPVGRVHR LKTR  A+GRVGATA
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKS+KE
Sbjct: 121 PHIHKSLINKSAKE 134

[Close]
BLAST of CmoCh17G008090 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.1e-58
Identity = 116/136 (85.29%), Postives = 130/136 (95.59%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K  +A+ +KDKDKKKP+SRS+RAG+QFPVGR+HRQLKTRV+A+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of CmoCh17G008090 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-56
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKS----ASNNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKTRVAANGR 60
           M+GKG KGL+  K+    A+ +KDKD+KK PVSRSSRAG+QFPVGR+HRQLK RV+ANGR
Sbjct: 1   MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGR 60

Query: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120
           VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA
Sbjct: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120

Query: 121 GGGVIPHIHKSLINKSSKE 135
           GGGVIPHIHKSLINK++KE
Sbjct: 121 GGGVIPHIHKSLINKTAKE 139

[Close]
BLAST of CmoCh17G008090 vs. ExPASy Swiss-Prot
Match: Q84MP7 (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-56
Identity = 118/137 (86.13%), Postives = 123/137 (89.78%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSA---SNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVG 60
           M+GKG KGL+  K+    S  KDK KK PVSRSSRAGLQFPVGR+HRQLK R  ANGRVG
Sbjct: 1   MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVG 60

Query: 61  ATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120
           ATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG
Sbjct: 61  ATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120

Query: 121 GVIPHIHKSLINKSSKE 135
           GVIPHIHKSLINKSSKE
Sbjct: 121 GVIPHIHKSLINKSSKE 137

[Close]
BLAST of CmoCh17G008090 vs. ExPASy Swiss-Prot
Match: Q8H7Y8 (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.9e-56
Identity = 118/138 (85.51%), Postives = 128/138 (92.75%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSA---SNNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKTRVAANGRV 60
           M+GKG KGL+  K+    S +KDKDKKK PVSRSSRAGLQFPVGR+HRQLK+R +A+GRV
Sbjct: 1   MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRV 60

Query: 61  GATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120
           GATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120

Query: 121 GGVIPHIHKSLINKSSKE 135
           GGVIPHIHKSLINK+SKE
Sbjct: 121 GGVIPHIHKSLINKTSKE 138

[Close]
BLAST of CmoCh17G008090 vs. ExPASy TrEMBL
Match: A0A6J1JQN2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488055 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.0e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. ExPASy TrEMBL
Match: A0A6J1GMV1 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111455842 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.0e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. ExPASy TrEMBL
Match: A0A6J1DGE3 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111020264 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.7e-64
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. ExPASy TrEMBL
Match: A0A5D3CH66 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002320 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. ExPASy TrEMBL
Match: A0A0A0K6F6 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G433390 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. NCBI nr
Match: XP_022953233.1 (probable histone H2A variant 3 [Cucurbita moschata] >XP_022959863.1 probable histone H2A variant 3 [Cucurbita moschata] >XP_022991416.1 probable histone H2A variant 3 [Cucurbita maxima] >XP_023004192.1 probable histone H2A variant 3 [Cucurbita maxima] >XP_023513932.1 probable histone H2A variant 3 [Cucurbita pepo subsp. pepo] >XP_023548701.1 probable histone H2A variant 3 [Cucurbita pepo subsp. pepo] >KAG6593413.1 putative histone H2A variant 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014117.1 putative histone H2A variant 3, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7025761.1 putative histone H2A variant 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 254.2 bits (648), Expect = 6.2e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. NCBI nr
Match: XP_022152569.1 (probable histone H2A variant 3 [Momordica charantia] >XP_030526377.1 probable histone H2A variant 3 [Rhodamnia argentea] >XP_038899732.1 probable histone H2A variant 3 [Benincasa hispida] >KAF8011693.1 hypothetical protein BT93_J2080 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. NCBI nr
Match: XP_004135834.1 (probable histone H2A variant 3 isoform X2 [Cucumis sativus] >XP_008461070.2 PREDICTED: probable histone H2A variant 3 [Cucumis melo] >KAA0058784.1 putative histone H2A variant 3 [Cucumis melo var. makuwa] >KGN45310.1 hypothetical protein Csa_015723 [Cucumis sativus] >TYK10578.1 putative histone H2A variant 3 [Cucumis melo var. makuwa])

HSP 1 Score: 251.5 bits (641), Expect = 4.0e-63
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. NCBI nr
Match: XP_010033915.1 (probable histone H2A variant 3 [Eucalyptus grandis] >XP_030464610.1 probable histone H2A variant 3 [Syzygium oleosum] >KCW53786.1 hypothetical protein EUGRSUZ_J03033 [Eucalyptus grandis])

HSP 1 Score: 250.8 bits (639), Expect = 6.8e-63
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSASN+KDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. NCBI nr
Match: XP_031406453.1 (probable histone H2A variant 3 [Punica granatum] >OWM81812.1 hypothetical protein CDL15_Pgr007850 [Punica granatum] >PKI43477.1 hypothetical protein CRG98_036234 [Punica granatum])

HSP 1 Score: 244.2 bits (622), Expect = 6.4e-61
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSA  NKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSA--NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 132

[Close]
BLAST of CmoCh17G008090 vs. TAIR 10
Match: AT1G52740.1 (histone H2A protein 9 )

HSP 1 Score: 233.0 bits (593), Expect = 1.4e-61
Identity = 121/134 (90.30%), Postives = 129/134 (96.27%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQFPVGRVHR LKTR  A+GRVGATA
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKS+KE
Sbjct: 121 PHIHKSLINKSAKE 134

[Close]
BLAST of CmoCh17G008090 vs. TAIR 10
Match: AT3G54560.1 (histone H2A 11 )

HSP 1 Score: 225.7 bits (574), Expect = 2.2e-59
Identity = 116/136 (85.29%), Postives = 130/136 (95.59%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K  +A+ +KDKDKKKP+SRS+RAG+QFPVGR+HRQLKTRV+A+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of CmoCh17G008090 vs. TAIR 10
Match: AT2G38810.1 (histone H2A 8 )

HSP 1 Score: 214.2 bits (544), Expect = 6.6e-56
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K  +A+ NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of CmoCh17G008090 vs. TAIR 10
Match: AT2G38810.3 (histone H2A 8 )

HSP 1 Score: 214.2 bits (544), Expect = 6.6e-56
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K  +A+ NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of CmoCh17G008090 vs. TAIR 10
Match: AT2G38810.2 (histone H2A 8 )

HSP 1 Score: 214.2 bits (544), Expect = 6.6e-56
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K  +A+ NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

The following BLAST results are available for this feature:
BLAST of CmoCh17G008090 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C9441.9e-6090.30Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1... [more]
O236283.1e-5885.29Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1[more]
Q8S8571.7e-5684.89Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g... [more]
Q84MP71.7e-5686.13Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
Q8H7Y82.9e-5685.51Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
BLAST of CmoCh17G008090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JQN23.0e-64100.00Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488055 PE=3 SV=1[more]
A0A6J1GMV13.0e-64100.00Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111455842 PE=3 SV=1[more]
A0A6J1DGE38.7e-6499.25Histone H2A OS=Momordica charantia OX=3673 GN=LOC111020264 PE=3 SV=1[more]
A0A5D3CH661.9e-6398.51Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002320 P... [more]
A0A0A0K6F61.9e-6398.51Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G433390 PE=3 SV=1[more]
BLAST of CmoCh17G008090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022953233.16.2e-64100.00probable histone H2A variant 3 [Cucurbita moschata] >XP_022959863.1 probable his... [more]
XP_022152569.11.8e-6399.25probable histone H2A variant 3 [Momordica charantia] >XP_030526377.1 probable hi... [more]
XP_004135834.14.0e-6398.51probable histone H2A variant 3 isoform X2 [Cucumis sativus] >XP_008461070.2 PRED... [more]
XP_010033915.16.8e-6398.51probable histone H2A variant 3 [Eucalyptus grandis] >XP_030464610.1 probable his... [more]
XP_031406453.16.4e-6197.76probable histone H2A variant 3 [Punica granatum] >OWM81812.1 hypothetical protei... [more]
BLAST of CmoCh17G008090 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G52740.11.4e-6190.30histone H2A protein 9 [more]
AT3G54560.12.2e-5985.29histone H2A 11 [more]
AT2G38810.16.6e-5682.35histone H2A 8 [more]
AT2G38810.36.6e-5682.35histone H2A 8 [more]
AT2G38810.26.6e-5682.35histone H2A 8 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 70..83
score: 84.63
coord: 55..70
score: 71.55
coord: 111..129
score: 51.98
coord: 25..47
score: 73.0
coord: 84..98
score: 65.78
IPR002119Histone H2ASMARTSM00414h2a4coord: 14..134
e-value: 3.1E-69
score: 246.0
IPR002119Histone H2ACDDcd00074H2Acoord: 26..130
e-value: 2.91581E-55
score: 166.742
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 18..103
e-value: 1.1E-19
score: 71.1
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 104..133
e-value: 8.1E-11
score: 41.5
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 13..134
e-value: 2.4E-56
score: 191.0
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 4..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availablePANTHERPTHR23430:SF300HISTONE H2Acoord: 2..132
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 2..132
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 33..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G008090.1CmoCh17G008090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031507 heterochromatin assembly
biological_process GO:0044030 regulation of DNA methylation
biological_process GO:0009266 response to temperature stimulus
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity