CmoCh17G007610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G007610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	30S ribosomal protein S17, chloroplastic-like
Location	Cmo_Chr17: 7449674 .. 7450153 (-)
RNA-Seq Expression	CmoCh17G007610
Synteny	CmoCh17G007610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTCTGAGTCCCTCATCCTTTCTGCAAATTCCTCCATTACAGAGGCTGAAGAACCTCTCAATTTCCACTTCCTTCCTCCATGGCTCAGTTCCTCTGTCATTTCTCTCTAAGCCTTCGCCCTCGCTATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCGATTAAGGCCATGAGGTCGCTGCAAGGCCGTGTGGTCTGCGCTACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAATACAAACGGCGCATTAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACAAATTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGGCCGATCAGCAAGATGAAGACGTTCCTGGCCATTCCAGTTCCGGCGAGGAATTCGAAGCCGAAAGCGGCGGAAGCCGGTGCTGGAGAGCTCGGGATTCCATTGGAGTCGCAGGAACAGGTTTAA

mRNA sequence

ATGTCTGCTCTGAGTCCCTCATCCTTTCTGCAAATTCCTCCATTACAGAGGCTGAAGAACCTCTCAATTTCCACTTCCTTCCTCCATGGCTCAGTTCCTCTGTCATTTCTCTCTAAGCCTTCGCCCTCGCTATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCGATTAAGGCCATGAGGTCGCTGCAAGGCCGTGTGGTCTGCGCTACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAATACAAACGGCGCATTAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACAAATTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGGCCGATCAGCAAGATGAAGACGTTCCTGGCCATTCCAGTTCCGGCGAGGAATTCGAAGCCGAAAGCGGCGGAAGCCGGTGCTGGAGAGCTCGGGATTCCATTGGAGTCGCAGGAACAGGTTTAA

Coding sequence (CDS)

ATGTCTGCTCTGAGTCCCTCATCCTTTCTGCAAATTCCTCCATTACAGAGGCTGAAGAACCTCTCAATTTCCACTTCCTTCCTCCATGGCTCAGTTCCTCTGTCATTTCTCTCTAAGCCTTCGCCCTCGCTATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCGATTAAGGCCATGAGGTCGCTGCAAGGCCGTGTGGTCTGCGCTACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAATACAAACGGCGCATTAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACAAATTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGGCCGATCAGCAAGATGAAGACGTTCCTGGCCATTCCAGTTCCGGCGAGGAATTCGAAGCCGAAAGCGGCGGAAGCCGGTGCTGGAGAGCTCGGGATTCCATTGGAGTCGCAGGAACAGGTTTAA

Protein sequence

MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV

Homology

[Close]

BLAST of CmoCh17G007610 vs. ExPASy Swiss-Prot
Match: P16180 (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS17 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.3e-42
Identity = 93/141 (65.96%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 18  LKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAV 77
           L+ L +S+ F HGS PLS LSKP+ S    + P  +P I+AM+++QGRVVCAT+DKTVAV
Sbjct: 10  LQALKLSSPFAHGSTPLSSLSKPN-SFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAV 69

Query: 78  EVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNS 137
           EVVRLAPHPKYKRR+R+KKKYQAHDPDN+FKVGD V LEK RPISK K+F+A+PV AR +
Sbjct: 70  EVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAA 129

Query: 138 KPKAAEAGAGE-LGIPLESQE 158
             + AEAG  E LG+PLESQ+
Sbjct: 130 --RKAEAGGDELLGLPLESQQ 147

[Close]

BLAST of CmoCh17G007610 vs. ExPASy Swiss-Prot
Match: P82137 (30S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 PE=1 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 2.5e-38
Identity = 97/163 (59.51%), Postives = 113/163 (69.33%), Query Frame = 0


Query: 4   LSPSSFLQIPPLQRLKNLSISTSFLHGSV-------PLSFLSKPSPSLSASQTPNFLPSI 63
           +S S  L  PPL    + S    FLHG+          S LS  S   S+S T  F P I
Sbjct: 1   MSLSFSLLKPPL----SSSNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTF-PVI 60

Query: 64  KAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELE 123
           KAMRS+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQAHDPDN+FKVGD+V+L+
Sbjct: 61  KAMRSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLD 120

Query: 124 KCRPISKMKTFLAIPVPARNS---KPKAAEAGAGELGIPLESQ 157
           KCRPISK KTFLA+    R S   +PK  +A + ELGIPLESQ
Sbjct: 121 KCRPISKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQ 158

[Close]

BLAST of CmoCh17G007610 vs. ExPASy Swiss-Prot
Match: P17092 (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.3e-34
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = 0


Query: 27  FLHGSVPLSFLSKP--SPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAP 86
           F    + L+  S P  SP           P+IKAM++++G+VVCA+ +KTVAVEV RLAP
Sbjct: 4   FTGNGIGLNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAP 63

Query: 87  HPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEA 146
           HPKY++RIR+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA+P P+R SK   +  
Sbjct: 64  HPKYQKRIRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKKAGS-- 123

Query: 147 GAGELGIPLESQEQ 159
            +GELGIPL+SQ++
Sbjct: 124 -SGELGIPLQSQQE 134

[Close]

BLAST of CmoCh17G007610 vs. ExPASy Swiss-Prot
Match: Q9TJN6 (30S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.8e-28
Identity = 74/127 (58.27%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 31  SVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKR 90
           S P   +S P P LS+      L  I+A R L GRVV    DKTV VEVVRLAPHPKYKR
Sbjct: 5   SSPFVSVSPPPPPLSSHGARPAL-RIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKYKR 64

Query: 91  RIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELG 150
           R RIKKKYQAHDPDN+FKVGD VEL+  RPISK K FLAIP+P R+++ K+      +L 
Sbjct: 65  RERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRKS------QLL 124

Query: 151 IPLESQE 158
            PL+S +
Sbjct: 125 PPLQSDD 124

[Close]

BLAST of CmoCh17G007610 vs. ExPASy Swiss-Prot
Match: Q9ZST1 (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 66/103 (64.08%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 56  IKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVEL 115
           I+A + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDN+FKVGD VEL
Sbjct: 34  IQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVEL 93

Query: 116 EKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ 159
            + RPISK K FLA+P+P R+++ K+      +L  PL+SQ Q
Sbjct: 94  RRSRPISKTKHFLAVPLPPRDTRRKS------QLLPPLQSQSQ 130

[Close]

BLAST of CmoCh17G007610 vs. ExPASy TrEMBL
Match: A0A6J1GQP3 (30S ribosomal protein S17, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111456201 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 7.9e-80
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMR 60
           MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMR
Sbjct: 1   MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMR 60

Query: 61  SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRP 120
           SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRP
Sbjct: 61  SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRP 120

Query: 121 ISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV 160
           ISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV
Sbjct: 121 ISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV 159

[Close]

BLAST of CmoCh17G007610 vs. ExPASy TrEMBL
Match: A0A6J1JVM9 (30S ribosomal protein S17, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488732 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.4e-75
Identity = 150/158 (94.94%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 2   SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRS 61
           + LS SSFLQIPPLQRLKNLS+STSFLHGSVPLSFLSKPSPSLSASQTPNFLPSI+AMRS
Sbjct: 3   ATLSHSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIRAMRS 62

Query: 62  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI 121
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI
Sbjct: 63  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI 122

Query: 122 SKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV 160
           SKMKTFLAIPVPARNSKPKAAEAG GEL IPLESQ+QV
Sbjct: 123 SKMKTFLAIPVPARNSKPKAAEAGVGELEIPLESQQQV 160

[Close]

BLAST of CmoCh17G007610 vs. ExPASy TrEMBL
Match: A0A6J1KMI9 (30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494663 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 136/158 (86.08%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 2   SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRS 61
           + L+PSS LQIPPLQR K LS+STSFLHGS PLSFLSKP+P  S  QT NFLPSI+AM+S
Sbjct: 3   ATLTPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPAP--SPPQTLNFLPSIRAMKS 62

Query: 62  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI 121
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCRPI
Sbjct: 63  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 122

Query: 122 SKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV 160
           SKMKTFLAIPVPARNSK K AEA AG+LGIPLESQ+QV
Sbjct: 123 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQV 158

[Close]

BLAST of CmoCh17G007610 vs. ExPASy TrEMBL
Match: A0A6J1HJK0 (30S ribosomal protein S17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464160 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 136/158 (86.08%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 2   SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRS 61
           + L+PSS LQIPPLQR K LS+STSFLHGS PLSFLSKP+P  S  QT NFLPSI+AM+S
Sbjct: 3   ATLNPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPAP--SPPQTLNFLPSIRAMKS 62

Query: 62  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI 121
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCRPI
Sbjct: 63  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 122

Query: 122 SKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV 160
           SKMKTFLAIPVPARNSK K AEA AG+LGIPLESQ+QV
Sbjct: 123 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQV 158

[Close]

BLAST of CmoCh17G007610 vs. ExPASy TrEMBL
Match: A0A1S3CGC8 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500591 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.2e-65
Identity = 138/160 (86.25%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 2   SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKP--SPSLSASQTPNFLPSIKAM 61
           + L+ SS LQIPPLQ LK LSIS+SFLHGS PLSFLSKP  SPS  ASQTPNFLPSI+AM
Sbjct: 3   TTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSPSPLASQTPNFLPSIRAM 62

Query: 62  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCR 121
           RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCR
Sbjct: 63  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCR 122

Query: 122 PISKMKTFLAIPVPARNSKPKAAEAG-AGELGIPLESQEQ 159
           PISKMKTFLAIPVPAR SK KAAE G  GELGIPLESQ++
Sbjct: 123 PISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE 162

[Close]

BLAST of CmoCh17G007610 vs. NCBI nr
Match: XP_022953774.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita moschata] >KAG7014072.1 30S ribosomal protein S17, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 306.2 bits (783), Expect = 1.6e-79
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMR 60
           MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMR
Sbjct: 1   MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMR 60

Query: 61  SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRP 120
           SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRP
Sbjct: 61  SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRP 120

Query: 121 ISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV 160
           ISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV
Sbjct: 121 ISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV 159

[Close]

BLAST of CmoCh17G007610 vs. NCBI nr
Match: KAG6575529.1 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 304.7 bits (779), Expect = 4.7e-79
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMR 60
           MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMR
Sbjct: 1   MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMR 60

Query: 61  SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRP 120
           SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRP
Sbjct: 61  SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRP 120

Query: 121 ISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ 159
           ISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ
Sbjct: 121 ISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ 158

[Close]

BLAST of CmoCh17G007610 vs. NCBI nr
Match: XP_023548191.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 154/158 (97.47%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 2   SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRS 61
           + LSPSSFLQIPPLQRLKNLS+STSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRS
Sbjct: 3   ATLSPSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRS 62

Query: 62  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI 121
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI
Sbjct: 63  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI 122

Query: 122 SKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV 160
           SKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQ+QV
Sbjct: 123 SKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQQQV 160

[Close]

BLAST of CmoCh17G007610 vs. NCBI nr
Match: XP_022992420.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 290.8 bits (743), Expect = 7.1e-75
Identity = 150/158 (94.94%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 2   SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRS 61
           + LS SSFLQIPPLQRLKNLS+STSFLHGSVPLSFLSKPSPSLSASQTPNFLPSI+AMRS
Sbjct: 3   ATLSHSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIRAMRS 62

Query: 62  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI 121
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI
Sbjct: 63  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI 122

Query: 122 SKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV 160
           SKMKTFLAIPVPARNSKPKAAEAG GEL IPLESQ+QV
Sbjct: 123 SKMKTFLAIPVPARNSKPKAAEAGVGELEIPLESQQQV 160

[Close]

BLAST of CmoCh17G007610 vs. NCBI nr
Match: XP_023513636.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.9 bits (668), Expect = 3.5e-66
Identity = 136/158 (86.08%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 2   SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRS 61
           + L+PSS LQIPPLQR K LS+STSFLHGS PLSFLSKP+P  S  QT NFLPSI+AM+S
Sbjct: 3   ATLNPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPAP--SPPQTLNFLPSIRAMKS 62

Query: 62  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI 121
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCRPI
Sbjct: 63  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 122

Query: 122 SKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV 160
           SKMKTFLAIPVPARNSK K AEA AG+LGIPLESQ+QV
Sbjct: 123 SKMKTFLAIPVPARNSKKKVAEAAAGDLGIPLESQQQV 158

[Close]

BLAST of CmoCh17G007610 vs. TAIR 10
Match: AT1G79850.1 (ribosomal protein S17 )

HSP 1 Score: 171.8 bits (434), Expect = 4.5e-43
Identity = 93/141 (65.96%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 18  LKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAV 77
           L+ L +S+ F HGS PLS LSKP+ S    + P  +P I+AM+++QGRVVCAT+DKTVAV
Sbjct: 10  LQALKLSSPFAHGSTPLSSLSKPN-SFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAV 69

Query: 78  EVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNS 137
           EVVRLAPHPKYKRR+R+KKKYQAHDPDN+FKVGD V LEK RPISK K+F+A+PV AR +
Sbjct: 70  EVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAA 129

Query: 138 KPKAAEAGAGE-LGIPLESQE 158
             + AEAG  E LG+PLESQ+
Sbjct: 130 --RKAEAGGDELLGLPLESQQ 147

The following BLAST results are available for this feature:

BLAST of CmoCh17G007610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P16180	6.3e-42	65.96	30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82137	2.5e-38	59.51	30S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 P...	[more]
P17092	6.3e-34	56.72	30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=...	[more]
Q9TJN6	8.8e-28	58.27	30S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1	[more]
Q9ZST1	1.5e-27	64.08	30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of CmoCh17G007610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQP3	7.9e-80	100.00	30S ribosomal protein S17, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JVM9	3.4e-75	94.94	30S ribosomal protein S17, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KMI9	1.7e-66	86.08	30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1HJK0	1.7e-66	86.08	30S ribosomal protein S17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A1S3CGC8	3.2e-65	86.25	30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500591...	[more]

BLAST of CmoCh17G007610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953774.1	1.6e-79	100.00	30S ribosomal protein S17, chloroplastic-like [Cucurbita moschata] >KAG7014072.1...	[more]
KAG6575529.1	4.7e-79	100.00	Cytochrome c-type biogenesis CcmH-like mitochondrial protein, partial [Cucurbita...	[more]
XP_023548191.1	1.2e-77	97.47	30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022992420.1	7.1e-75	94.94	30S ribosomal protein S17, chloroplastic-like [Cucurbita maxima]	[more]
XP_023513636.1	3.5e-66	86.08	30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh17G007610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79850.1	4.5e-43	65.96	ribosomal protein S17	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 78..101 score: 34.25 coord: 110..120 score: 52.55 coord: 120..127 score: 52.75
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 64..127 e-value: 1.1E-23 score: 83.1
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 38..158
None	No IPR available	GENE3D	2.40.50.140		coord: 58..148 e-value: 7.5E-25 score: 88.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..159
None	No IPR available	PANTHER	PTHR10744:SF7	30S RIBOSOMAL PROTEIN S17, CHLOROPLASTIC	coord: 38..158
IPR019979	Ribosomal protein S17, conserved site	PROSITE	PS00056	RIBOSOMAL_S17	coord: 110..122
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 59..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G007610.1	CmoCh17G007610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome