CmoCh17G006690 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G006690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S3
Location	Cmo_Chr17: 6893343 .. 6895601 (+)
RNA-Seq Expression	CmoCh17G006690
Synteny	CmoCh17G006690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCAGATGAGCAAAAAGCGAAAGGTAGGTATTGAATTCGTTTCTTCATCTTATGTTCTCCATGAGACACTAATTATTCTGCACATTTTGGTTTGGTTAAGATTTACTTTATTCAATTCGGTGCAGTTTGTGGCTGATGGAGTGTTCTTCGCGGAGCTAAATGAAGTTCTTACCAGAGAGCTTGCAGAGGATGGATACTCCGGAGTGGAGGTTAGGGTTACACCAATGCGGACTGAGATTATCATTAGGGCTACTCGTACACAGAATGTTCTTGGTAAGAAATTTTCTCTTCTAGTATTGATATTTTTGTTATTTGAATCATCGGAATAGGTTTAGGAAGATTGGAATCTGTTTTTGTTTCAGATCAAGCTACCGCTACGAGTGTCTTTTCATTTTCTCTTCTAGTATTGATATTTTTTACCTGCGGATCATCGGCATAGGTTTGGGAAGTTTGGAATCTGTTTTTGTTTCATATCAAGCTGCTACTGCTACGAGTGTTTTTAACCATTATTGGTTGTGCTTCCGTCTATAACTTCCAATTTTGCTTCAAAATTATGAACTGTGTATTCATCTCTAATTGGAATCTCATGTAATTCTTGCGAAGTTGAATTTAGAATTTTAGACATGCGTAAGGAGTTGTGTTGAAGTGTTACCGCTTTGTAATTGGTTACGGCCTCTAATTGGGTTGGATGGCTCTCTACGTTTTAGTACAATGTAAAGTTATGTTCTGTTGTTGGTGCTGGATAGTCGACATAGTTGAATTTTTCTTCTGTAGAGGTTATTGGCGCTGTATGCCTTACTCGAGTTTTGATGGTTAATGTCATTGGAGGATATGGATACATTGAAGTGGATTTAAGTTCTTAGGTCAATAGCTGTTTCATTTTCCTTACACAGGAGTTGGGAGTTTAGATATATCAAACATGTTAGAGTAGTTTAATTTTGGTGTTTTCAGTCGTTGCTTTTGGATCTGGTGTCTGACTATGTATTCAATTGTGTGGCTATAGGTGAGAAAGGTAGGAGAATCAGAGAATTGACATCTGTTGTTCAGAAGCGTTTCAAGTTTCCCGAAAACAGTGTTGAGCTATATGCCGAGAAGGTCAACAACAGAGGACTCTGTGCCATTGCTCAAGCTGAGTCTCTCCGCTACAAGCTTCTCGGAGGCCTTGCTGTGAGAAGGTATAATAGAAATTATGGATGTTTTTGGAAACTTTTAGTCTTAGGTTCGTGCAATATCATAATGATGAAAATTTTCCTGGATACTGATTGTTTGGTTTGGAACTATGTCGTCTTTACACGTTTAACTCCATATTTTGGCAATCACTCCTATTCAGCATTACTTTTTCATTTTTCCAGGGCTTGCTATGGTGTCCTTAGATTTGTCATGGAGAGTGGAGCTAAAGGATGTGAGGTCAGTCCTAACTTCATCTTTATAGAATTTGTTCTTGATGGTTTGGTGGGTTTGTATTACACATCTTTATTAATTAGTAATCTGAATCATGCAGGTTATTGTAAGTGGTAAGCTGAGGGCCCAGCGTGCAAAATCCATGAAATTCAAGGATGGATACATGATTTCGTCTGGACAGCCAGTGAAAGAGTACATCGACTCTGCCGTGAGACACGTTCTCCTTAGACAGGTCAGTTCAGTATTCATCTCAAGACGGCATTCATTATCTTTTCATGAATCATATATGTGGGTGGATTTGTTCTTTAATTGATGCCTCTGTTTCTTTAATTTACAGGGTGTTCTGGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCAAAGGGCAAGCAAGGTCCACCGACACCGCTTCCCGATTTGGTTACTATCCATACTCCCAAGGAGGAAGAGGATTTCATTAGGCCTGTGGCTGTGATTCCGACGGCTGAGATTGAAGTTGAAGCAGCAGCTTAAGAGCCAGCAGACATGAGGGGGGAGCAAGTTGTCTAGTGTTGCTATCATAATATCATTTCTTTCAGAATATGGAATTCTAAGTTTTGATGTCATTTTTCTTCTGTTTTGAGTTTTGATTTTGGGATATTTCTGTTACAAAATATTCAAAGAGGCCGTGGTACTTAACTTTATGTCAGAGCCCCTAGTGTTCTAATGGTAATCTTAACGATGATGCCATTTAGTTGTATAAGTTTGGCCTGTACGGACATAATTTTGGGCTTCTCACGTATTGGGCCTTGGACATAATGACGGGCCCAAAATTGACATTTACAGTAAGGAACACTAAAAGCCTGCGAAG

mRNA sequence

ATGGCTACTCAGATGAGCAAAAAGCGAAAGGTAGGTATTGAATTCGTTTCTTCATCTTATGTTCTCCATGAGACACTAATTATTCTGCACATTTTGGTTTGGTTAAGATTTACTTTATTCAATTCGGTGCAGTTTGTGGCTGATGGAGTGTTCTTCGCGGAGCTAAATGAAGTTCTTACCAGAGAGCTTGCAGAGGATGGATACTCCGGAGTGGAGGTTAGGGTTACACCAATGCGGACTGAGATTATCATTAGGGCTACTCGTACACAGAATGTTCTTGAGGTTATTGGCGCTGTATGCCTTACTCGAGTTTTGATGTCGTTGCTTTTGGATCTGGTGTCTGACTATGTATTCAATTGTGTGGCTATAGGTGAGAAAGGTAGGAGAATCAGAGAATTGACATCTGTTGTTCAGAAGCGTTTCAAGTTTCCCGAAAACAGTGTTGAGCTATATGCCGAGAAGGTCAACAACAGAGGACTCTGTGCCATTGCTCAAGCTGAGTCTCTCCGCTACAAGCTTCTCGGAGGCCTTGCTGTGAGAAGGTATAATAGAAATTATGGATGTTTTTGGAAACTTTTAGTCTTAGGTTCGTGCAATATCATAATGATGAAAATTTTCCTGGATACTGATTGTTTGGTTTGGAACTATGTCGTCTTTACACGTTTAACTCCATATTTTGGCAATCACTCCTATTCAGCATTACTTTTTCATTTTTCCAGGGCTTGCTATGGTGTCCTTAGATTTGTCATGGAGAGTGGAGCTAAAGGATGTGAGGTCAGTCCTAACTTCATCTTTATAGAATTTGTTCTTGATGGTTTGGTTATTGTAAGTGGTAAGCTGAGGGCCCAGCGTGCAAAATCCATGAAATTCAAGGATGGATACATGATTTCGTCTGGACAGCCAGTGAAAGAGTACATCGACTCTGCCGTGAGACACGTTCTCCTTAGACAGGGTGTTCTGGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCAAAGGGCAAGCAAGGTCCACCGACACCGCTTCCCGATTTGGTTACTATCCATACTCCCAAGGAGGAAGAGGATTTCATTAGGCCTGTGGCTGTGATTCCGACGGCTGAGATTGAAGTTGAAGCAGCAGCTTAAGAGCCAGCAGACATGAGGGGGGAGCAAGTTGTCTAGTGTTGCTATCATAATATCATTTCTTTCAGAATATGGAATTCTAAGTTTTGATGTCATTTTTCTTCTGTTTTGAGTTTTGATTTTGGGATATTTCTGTTACAAAATATTCAAAGAGGCCGTGGTACTTAACTTTATGTCAGAGCCCCTAGTGTTCTAATGGTAATCTTAACGATGATGCCATTTAGTTGTATAAGTTTGGCCTGTACGGACATAATTTTGGGCTTCTCACGTATTGGGCCTTGGACATAATGACGGGCCCAAAATTGACATTTACAGTAAGGAACACTAAAAGCCTGCGAAG

Coding sequence (CDS)

ATGGCTACTCAGATGAGCAAAAAGCGAAAGGTAGGTATTGAATTCGTTTCTTCATCTTATGTTCTCCATGAGACACTAATTATTCTGCACATTTTGGTTTGGTTAAGATTTACTTTATTCAATTCGGTGCAGTTTGTGGCTGATGGAGTGTTCTTCGCGGAGCTAAATGAAGTTCTTACCAGAGAGCTTGCAGAGGATGGATACTCCGGAGTGGAGGTTAGGGTTACACCAATGCGGACTGAGATTATCATTAGGGCTACTCGTACACAGAATGTTCTTGAGGTTATTGGCGCTGTATGCCTTACTCGAGTTTTGATGTCGTTGCTTTTGGATCTGGTGTCTGACTATGTATTCAATTGTGTGGCTATAGGTGAGAAAGGTAGGAGAATCAGAGAATTGACATCTGTTGTTCAGAAGCGTTTCAAGTTTCCCGAAAACAGTGTTGAGCTATATGCCGAGAAGGTCAACAACAGAGGACTCTGTGCCATTGCTCAAGCTGAGTCTCTCCGCTACAAGCTTCTCGGAGGCCTTGCTGTGAGAAGGTATAATAGAAATTATGGATGTTTTTGGAAACTTTTAGTCTTAGGTTCGTGCAATATCATAATGATGAAAATTTTCCTGGATACTGATTGTTTGGTTTGGAACTATGTCGTCTTTACACGTTTAACTCCATATTTTGGCAATCACTCCTATTCAGCATTACTTTTTCATTTTTCCAGGGCTTGCTATGGTGTCCTTAGATTTGTCATGGAGAGTGGAGCTAAAGGATGTGAGGTCAGTCCTAACTTCATCTTTATAGAATTTGTTCTTGATGGTTTGGTTATTGTAAGTGGTAAGCTGAGGGCCCAGCGTGCAAAATCCATGAAATTCAAGGATGGATACATGATTTCGTCTGGACAGCCAGTGAAAGAGTACATCGACTCTGCCGTGAGACACGTTCTCCTTAGACAGGGTGTTCTGGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCAAAGGGCAAGCAAGGTCCACCGACACCGCTTCCCGATTTGGTTACTATCCATACTCCCAAGGAGGAAGAGGATTTCATTAGGCCTGTGGCTGTGATTCCGACGGCTGAGATTGAAGTTGAAGCAGCAGCTTAA

Protein sequence

MATQMSKKRKVGIEFVSSSYVLHETLIILHILVWLRFTLFNSVQFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTRVLMSLLLDLVSDYVFNCVAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLTPYFGNHSYSALLFHFSRACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRPVAVIPTAEIEVEAAA

Homology

[Close]

BLAST of CmoCh17G006690 vs. ExPASy Swiss-Prot
Match: Q9FJA6 (40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 2.4e-92
Identity = 198/330 (60.00%), Postives = 211/330 (63.94%), Query Frame = 0


Query: 44  QFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTR 103
           +FVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL          
Sbjct: 10  KFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL---------- 69

Query: 104 VLMSLLLDLVSDYVFNCVAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAI 163
                               GEKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAI
Sbjct: 70  --------------------GEKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAI 129

Query: 164 AQAESLRYKLLGGLAVRRYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLT 223
           AQAESLRYKLLGGLAVR                                           
Sbjct: 130 AQAESLRYKLLGGLAVR------------------------------------------- 189

Query: 224 PYFGNHSYSALLFHFSRACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQ 283
                           RACYGVLRFVMESGAKGCE               VIVSGKLRA 
Sbjct: 190 ----------------RACYGVLRFVMESGAKGCE---------------VIVSGKLRAA 235

Query: 284 RAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLP 343
           RAKSMKFKDGYM+SSGQP KEYID+AVRHVLLRQGVLG+KVKIMLDWDPKGKQGP TPLP
Sbjct: 250 RAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLP 235

Query: 344 DLVTIHTPKEEEDFIRPVAVIPTAEIEVEA 374
           D+V IHTPKE++ +I P  V+  A    EA
Sbjct: 310 DVVIIHTPKEDDVYIAPAQVVTQAAFVPEA 235

[Close]

BLAST of CmoCh17G006690 vs. ExPASy Swiss-Prot
Match: Q9M339 (40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 5.9e-91
Identity = 197/330 (59.70%), Postives = 207/330 (62.73%), Query Frame = 0


Query: 44  QFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTR 103
           +FVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL          
Sbjct: 10  KFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL---------- 69

Query: 104 VLMSLLLDLVSDYVFNCVAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAI 163
                               GEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAI
Sbjct: 70  --------------------GEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAI 129

Query: 164 AQAESLRYKLLGGLAVRRYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLT 223
           AQAESLRYKLLGGLAVR                                           
Sbjct: 130 AQAESLRYKLLGGLAVR------------------------------------------- 189

Query: 224 PYFGNHSYSALLFHFSRACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQ 283
                           RACYGVLRFVMESGAKGCE               VIVSGKLRA 
Sbjct: 190 ----------------RACYGVLRFVMESGAKGCE---------------VIVSGKLRAA 235

Query: 284 RAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLP 343
           RAKSMKFKDGYM+SSGQP KEYIDSAVRHVLLRQGVLGIKVK+MLDWDPKG  GP TPLP
Sbjct: 250 RAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLP 235

Query: 344 DLVTIHTPKEEEDFIRPVAVIPTAEIEVEA 374
           D+V IH+PKEEE    P  V   A +  +A
Sbjct: 310 DVVIIHSPKEEEAIYAPAQVAAPAALVADA 235

[Close]

BLAST of CmoCh17G006690 vs. ExPASy Swiss-Prot
Match: Q9SIP7 (40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.2e-88
Identity = 193/330 (58.48%), Postives = 204/330 (61.82%), Query Frame = 0


Query: 44  QFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTR 103
           +FVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL          
Sbjct: 10  KFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL---------- 69

Query: 104 VLMSLLLDLVSDYVFNCVAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAI 163
                               GEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAI
Sbjct: 70  --------------------GEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAI 129

Query: 164 AQAESLRYKLLGGLAVRRYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLT 223
           AQAESLRYKLLGGLAVR                                           
Sbjct: 130 AQAESLRYKLLGGLAVR------------------------------------------- 189

Query: 224 PYFGNHSYSALLFHFSRACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQ 283
                           RACYGVLRFVMESGAKGCE               VIVSGKLRA 
Sbjct: 190 ----------------RACYGVLRFVMESGAKGCE---------------VIVSGKLRAA 235

Query: 284 RAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLP 343
           RAKSMKFKDGYM+SSGQP KEYID+AVRHVLLRQGVLGIKVKIMLDWDP GK GP TPLP
Sbjct: 250 RAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLP 235

Query: 344 DLVTIHTPKEEEDFIRPVAVIPTAEIEVEA 374
           D+V IH PK++  +  P        +  EA
Sbjct: 310 DVVIIHAPKDDVVYSAPAQAAAPVTLVQEA 235

[Close]

BLAST of CmoCh17G006690 vs. ExPASy Swiss-Prot
Match: P02350 (40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2)

HSP 1 Score: 292.0 bits (746), Expect = 9.8e-78
Identity = 180/332 (54.22%), Postives = 192/332 (57.83%), Query Frame = 0


Query: 44  QFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTR 103
           +FVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVL          
Sbjct: 10  KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL---------- 69

Query: 104 VLMSLLLDLVSDYVFNCVAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAI 163
                               GEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAI
Sbjct: 70  --------------------GEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAI 129

Query: 164 AQAESLRYKLLGGLAVRRYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLT 223
           AQAESLRYKLLGGLAVR                                           
Sbjct: 130 AQAESLRYKLLGGLAVR------------------------------------------- 189

Query: 224 PYFGNHSYSALLFHFSRACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQ 283
                           RACYGVLRF+MESGAKGCE               V+VSGKLR Q
Sbjct: 190 ----------------RACYGVLRFIMESGAKGCE---------------VVVSGKLRGQ 229

Query: 284 RAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLP 343
           RAKSMKF DG MI SG PV  Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GP  PLP
Sbjct: 250 RAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLP 229

Query: 344 DLVTIHTPKEEEDFIRPVAVIPTAEIEVEAAA 376
           D V+I  PK+E        ++PT  I  + AA
Sbjct: 310 DHVSIVEPKDE--------IVPTTPISEQKAA 229

[Close]

BLAST of CmoCh17G006690 vs. ExPASy Swiss-Prot
Match: E2RH47 (40S ribosomal protein S3 OS=Canis lupus familiaris OX=9615 GN=RPS3 PE=1 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 4.9e-77
Identity = 178/326 (54.60%), Postives = 189/326 (57.98%), Query Frame = 0


Query: 44  QFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTR 103
           +FVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVL          
Sbjct: 10  KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL---------- 69

Query: 104 VLMSLLLDLVSDYVFNCVAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAI 163
                               GEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAI
Sbjct: 70  --------------------GEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAI 129

Query: 164 AQAESLRYKLLGGLAVRRYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLT 223
           AQAESLRYKLLGGLAVR                                           
Sbjct: 130 AQAESLRYKLLGGLAVR------------------------------------------- 189

Query: 224 PYFGNHSYSALLFHFSRACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQ 283
                           RACYGVLRF+MESGAKGCE               V+VSGKLR Q
Sbjct: 190 ----------------RACYGVLRFIMESGAKGCE---------------VVVSGKLRGQ 223

Query: 284 RAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLP 343
           RAKSMKF DG MI SG PV  Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GP  PLP
Sbjct: 250 RAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLP 223

Query: 344 DLVTIHTPKEEEDFIRPVAVIPTAEI 370
           D V+I  PK+E        ++PT  I
Sbjct: 310 DHVSIVEPKDE--------ILPTTPI 223

[Close]

BLAST of CmoCh17G006690 vs. ExPASy TrEMBL
Match: A0A6J1GQ60 (40S ribosomal protein S3-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456093 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 2.0e-105
Identity = 237/375 (63.20%), Postives = 237/375 (63.20%), Query Frame = 0


Query: 1   MATQMSKKRKVGIEFVSSSYVLHETLIILHILVWLRFTLFNSVQFVADGVFFAELNEVLT 60
           MATQMSKKRK                                  FVADGVFFAELNEVLT
Sbjct: 1   MATQMSKKRK----------------------------------FVADGVFFAELNEVLT 60

Query: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTRVLMSLLLDLVSDYVFNC 120
           RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL                           
Sbjct: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL--------------------------- 120

Query: 121 VAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180
              GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR
Sbjct: 121 ---GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180

Query: 181 RYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLTPYFGNHSYSALLFHFSR 240
                                                                      R
Sbjct: 181 -----------------------------------------------------------R 237

Query: 241 ACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQRAKSMKFKDGYMISSGQ 300
           ACYGVLRFVMESGAKGCE               VIVSGKLRAQRAKSMKFKDGYMISSGQ
Sbjct: 241 ACYGVLRFVMESGAKGCE---------------VIVSGKLRAQRAKSMKFKDGYMISSGQ 237

Query: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 360
           PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP
Sbjct: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 237

Query: 361 VAVIPTAEIEVEAAA 376
           VAVIPTAEIEVEAAA
Sbjct: 361 VAVIPTAEIEVEAAA 237

[Close]

BLAST of CmoCh17G006690 vs. ExPASy TrEMBL
Match: A0A6J1JPM9 (40S ribosomal protein S3-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488704 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 1.3e-104
Identity = 236/375 (62.93%), Postives = 236/375 (62.93%), Query Frame = 0


Query: 1   MATQMSKKRKVGIEFVSSSYVLHETLIILHILVWLRFTLFNSVQFVADGVFFAELNEVLT 60
           MATQMSKKRK                                  FVADGVFFAELNEVLT
Sbjct: 1   MATQMSKKRK----------------------------------FVADGVFFAELNEVLT 60

Query: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTRVLMSLLLDLVSDYVFNC 120
           RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL                           
Sbjct: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL--------------------------- 120

Query: 121 VAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180
              GEKGRRIRELTSVVQKRFKFP NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR
Sbjct: 121 ---GEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180

Query: 181 RYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLTPYFGNHSYSALLFHFSR 240
                                                                      R
Sbjct: 181 -----------------------------------------------------------R 237

Query: 241 ACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQRAKSMKFKDGYMISSGQ 300
           ACYGVLRFVMESGAKGCE               VIVSGKLRAQRAKSMKFKDGYMISSGQ
Sbjct: 241 ACYGVLRFVMESGAKGCE---------------VIVSGKLRAQRAKSMKFKDGYMISSGQ 237

Query: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 360
           PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP
Sbjct: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 237

Query: 361 VAVIPTAEIEVEAAA 376
           VAVIPTAEIEVEAAA
Sbjct: 361 VAVIPTAEIEVEAAA 237

[Close]

BLAST of CmoCh17G006690 vs. ExPASy TrEMBL
Match: A0A6J1D813 (40S ribosomal protein S3-3 OS=Momordica charantia OX=3673 GN=LOC111017761 PE=3 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 8.3e-104
Identity = 234/374 (62.57%), Postives = 235/374 (62.83%), Query Frame = 0


Query: 1   MATQMSKKRKVGIEFVSSSYVLHETLIILHILVWLRFTLFNSVQFVADGVFFAELNEVLT 60
           MATQMSKKRK                                  FVADGVFFAELNEVLT
Sbjct: 1   MATQMSKKRK----------------------------------FVADGVFFAELNEVLT 60

Query: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTRVLMSLLLDLVSDYVFNC 120
           RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL                           
Sbjct: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL--------------------------- 120

Query: 121 VAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180
              GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR
Sbjct: 121 ---GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180

Query: 181 RYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLTPYFGNHSYSALLFHFSR 240
                                                                      R
Sbjct: 181 -----------------------------------------------------------R 236

Query: 241 ACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQRAKSMKFKDGYMISSGQ 300
           ACYGVLRFVMESGAKGCE               VIVSGKLRAQRAKSMKFKDGYMISSGQ
Sbjct: 241 ACYGVLRFVMESGAKGCE---------------VIVSGKLRAQRAKSMKFKDGYMISSGQ 236

Query: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 360
           PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEE+FIRP
Sbjct: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEEFIRP 236

Query: 361 VAVIPTAEIEVEAA 375
           VAVIPTAEIEV AA
Sbjct: 361 VAVIPTAEIEVAAA 236

[Close]

BLAST of CmoCh17G006690 vs. ExPASy TrEMBL
Match: A0A6J1KD29 (40S ribosomal protein S3-3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494511 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 4.1e-103
Identity = 233/374 (62.30%), Postives = 234/374 (62.57%), Query Frame = 0


Query: 1   MATQMSKKRKVGIEFVSSSYVLHETLIILHILVWLRFTLFNSVQFVADGVFFAELNEVLT 60
           MATQMSKKRK                                  FVADGVFFAELNEVLT
Sbjct: 1   MATQMSKKRK----------------------------------FVADGVFFAELNEVLT 60

Query: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTRVLMSLLLDLVSDYVFNC 120
           RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL                           
Sbjct: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL--------------------------- 120

Query: 121 VAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180
              GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR
Sbjct: 121 ---GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180

Query: 181 RYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLTPYFGNHSYSALLFHFSR 240
                                                                      R
Sbjct: 181 -----------------------------------------------------------R 236

Query: 241 ACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQRAKSMKFKDGYMISSGQ 300
           ACYGVLRFVMESGAKGCE               VIVSGKLRAQRAKSMKFKDGYMISSGQ
Sbjct: 241 ACYGVLRFVMESGAKGCE---------------VIVSGKLRAQRAKSMKFKDGYMISSGQ 236

Query: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 360
           PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIH PKEEE+FIRP
Sbjct: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHIPKEEEEFIRP 236

Query: 361 VAVIPTAEIEVEAA 375
           VAVIPTAEIEV AA
Sbjct: 361 VAVIPTAEIEVAAA 236

[Close]

BLAST of CmoCh17G006690 vs. ExPASy TrEMBL
Match: A0A5D3BYH2 (40S ribosomal protein S3-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001190 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 9.2e-103
Identity = 235/375 (62.67%), Postives = 235/375 (62.67%), Query Frame = 0


Query: 1   MATQMSKKRKVGIEFVSSSYVLHETLIILHILVWLRFTLFNSVQFVADGVFFAELNEVLT 60
           MATQMSKKRK                                  FVADGVFFAELNEVLT
Sbjct: 1   MATQMSKKRK----------------------------------FVADGVFFAELNEVLT 60

Query: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTRVLMSLLLDLVSDYVFNC 120
           RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL                           
Sbjct: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL--------------------------- 120

Query: 121 VAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180
              GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR
Sbjct: 121 ---GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180

Query: 181 RYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLTPYFGNHSYSALLFHFSR 240
                                                                      R
Sbjct: 181 -----------------------------------------------------------R 237

Query: 241 ACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQRAKSMKFKDGYMISSGQ 300
           ACYGVLRFVMESGAKGCE               VIVSGKLRAQRAKSMKFKDGYMISSGQ
Sbjct: 241 ACYGVLRFVMESGAKGCE---------------VIVSGKLRAQRAKSMKFKDGYMISSGQ 237

Query: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 360
           PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP
Sbjct: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 237

Query: 361 V-AVIPTAEIEVEAA 375
           V AVIPTAEIEV AA
Sbjct: 361 VAAVIPTAEIEVGAA 237

[Close]

BLAST of CmoCh17G006690 vs. NCBI nr
Match: XP_022953609.1 (40S ribosomal protein S3-3-like [Cucurbita moschata] >KAG6575449.1 40S ribosomal protein S3-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013991.1 40S ribosomal protein S3-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 392.5 bits (1007), Expect = 4.1e-105
Identity = 237/375 (63.20%), Postives = 237/375 (63.20%), Query Frame = 0


Query: 1   MATQMSKKRKVGIEFVSSSYVLHETLIILHILVWLRFTLFNSVQFVADGVFFAELNEVLT 60
           MATQMSKKRK                                  FVADGVFFAELNEVLT
Sbjct: 1   MATQMSKKRK----------------------------------FVADGVFFAELNEVLT 60

Query: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTRVLMSLLLDLVSDYVFNC 120
           RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL                           
Sbjct: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL--------------------------- 120

Query: 121 VAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180
              GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR
Sbjct: 121 ---GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180

Query: 181 RYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLTPYFGNHSYSALLFHFSR 240
                                                                      R
Sbjct: 181 -----------------------------------------------------------R 237

Query: 241 ACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQRAKSMKFKDGYMISSGQ 300
           ACYGVLRFVMESGAKGCE               VIVSGKLRAQRAKSMKFKDGYMISSGQ
Sbjct: 241 ACYGVLRFVMESGAKGCE---------------VIVSGKLRAQRAKSMKFKDGYMISSGQ 237

Query: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 360
           PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP
Sbjct: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 237

Query: 361 VAVIPTAEIEVEAAA 376
           VAVIPTAEIEVEAAA
Sbjct: 361 VAVIPTAEIEVEAAA 237

[Close]

BLAST of CmoCh17G006690 vs. NCBI nr
Match: XP_023547512.1 (40S ribosomal protein S3-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.0 bits (1003), Expect = 1.2e-104
Identity = 236/375 (62.93%), Postives = 236/375 (62.93%), Query Frame = 0


Query: 1   MATQMSKKRKVGIEFVSSSYVLHETLIILHILVWLRFTLFNSVQFVADGVFFAELNEVLT 60
           MATQMSKKRK                                  FVADGVFFAELNEVLT
Sbjct: 1   MATQMSKKRK----------------------------------FVADGVFFAELNEVLT 60

Query: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTRVLMSLLLDLVSDYVFNC 120
           RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL                           
Sbjct: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL--------------------------- 120

Query: 121 VAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180
              GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR
Sbjct: 121 ---GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180

Query: 181 RYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLTPYFGNHSYSALLFHFSR 240
                                                                      R
Sbjct: 181 -----------------------------------------------------------R 237

Query: 241 ACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQRAKSMKFKDGYMISSGQ 300
           ACYGVLRFVMESGAKGCE               VIVSGKLRAQRAKSMKFKDGYMISSGQ
Sbjct: 241 ACYGVLRFVMESGAKGCE---------------VIVSGKLRAQRAKSMKFKDGYMISSGQ 237

Query: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 360
           PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP
Sbjct: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 237

Query: 361 VAVIPTAEIEVEAAA 376
            AVIPTAEIEVEAAA
Sbjct: 361 AAVIPTAEIEVEAAA 237

[Close]

BLAST of CmoCh17G006690 vs. NCBI nr
Match: XP_022992377.1 (40S ribosomal protein S3-3-like [Cucurbita maxima])

HSP 1 Score: 389.8 bits (1000), Expect = 2.6e-104
Identity = 236/375 (62.93%), Postives = 236/375 (62.93%), Query Frame = 0


Query: 1   MATQMSKKRKVGIEFVSSSYVLHETLIILHILVWLRFTLFNSVQFVADGVFFAELNEVLT 60
           MATQMSKKRK                                  FVADGVFFAELNEVLT
Sbjct: 1   MATQMSKKRK----------------------------------FVADGVFFAELNEVLT 60

Query: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTRVLMSLLLDLVSDYVFNC 120
           RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL                           
Sbjct: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL--------------------------- 120

Query: 121 VAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180
              GEKGRRIRELTSVVQKRFKFP NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR
Sbjct: 121 ---GEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180

Query: 181 RYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLTPYFGNHSYSALLFHFSR 240
                                                                      R
Sbjct: 181 -----------------------------------------------------------R 237

Query: 241 ACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQRAKSMKFKDGYMISSGQ 300
           ACYGVLRFVMESGAKGCE               VIVSGKLRAQRAKSMKFKDGYMISSGQ
Sbjct: 241 ACYGVLRFVMESGAKGCE---------------VIVSGKLRAQRAKSMKFKDGYMISSGQ 237

Query: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 360
           PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP
Sbjct: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 237

Query: 361 VAVIPTAEIEVEAAA 376
           VAVIPTAEIEVEAAA
Sbjct: 361 VAVIPTAEIEVEAAA 237

[Close]

BLAST of CmoCh17G006690 vs. NCBI nr
Match: XP_022149321.1 (40S ribosomal protein S3-3 [Momordica charantia])

HSP 1 Score: 387.1 bits (993), Expect = 1.7e-103
Identity = 234/374 (62.57%), Postives = 235/374 (62.83%), Query Frame = 0


Query: 1   MATQMSKKRKVGIEFVSSSYVLHETLIILHILVWLRFTLFNSVQFVADGVFFAELNEVLT 60
           MATQMSKKRK                                  FVADGVFFAELNEVLT
Sbjct: 1   MATQMSKKRK----------------------------------FVADGVFFAELNEVLT 60

Query: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTRVLMSLLLDLVSDYVFNC 120
           RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL                           
Sbjct: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL--------------------------- 120

Query: 121 VAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180
              GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR
Sbjct: 121 ---GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180

Query: 181 RYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLTPYFGNHSYSALLFHFSR 240
                                                                      R
Sbjct: 181 -----------------------------------------------------------R 236

Query: 241 ACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQRAKSMKFKDGYMISSGQ 300
           ACYGVLRFVMESGAKGCE               VIVSGKLRAQRAKSMKFKDGYMISSGQ
Sbjct: 241 ACYGVLRFVMESGAKGCE---------------VIVSGKLRAQRAKSMKFKDGYMISSGQ 236

Query: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 360
           PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEE+FIRP
Sbjct: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEEFIRP 236

Query: 361 VAVIPTAEIEVEAA 375
           VAVIPTAEIEV AA
Sbjct: 361 VAVIPTAEIEVAAA 236

[Close]

BLAST of CmoCh17G006690 vs. NCBI nr
Match: XP_023514160.1 (40S ribosomal protein S3-3 [Cucurbita pepo subsp. pepo] >KAG7025887.1 40S ribosomal protein S3-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 385.6 bits (989), Expect = 5.0e-103
Identity = 233/374 (62.30%), Postives = 234/374 (62.57%), Query Frame = 0


Query: 1   MATQMSKKRKVGIEFVSSSYVLHETLIILHILVWLRFTLFNSVQFVADGVFFAELNEVLT 60
           MATQMSKKRK                                  FVADGVFFAELNEVLT
Sbjct: 1   MATQMSKKRK----------------------------------FVADGVFFAELNEVLT 60

Query: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTRVLMSLLLDLVSDYVFNC 120
           RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL                           
Sbjct: 61  RELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL--------------------------- 120

Query: 121 VAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180
              GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR
Sbjct: 121 ---GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 180

Query: 181 RYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLTPYFGNHSYSALLFHFSR 240
                                                                      R
Sbjct: 181 -----------------------------------------------------------R 236

Query: 241 ACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQRAKSMKFKDGYMISSGQ 300
           ACYGVLRFVMESGAKGCE               VIVSGKLRAQRAKSMKFKDGYMISSGQ
Sbjct: 241 ACYGVLRFVMESGAKGCE---------------VIVSGKLRAQRAKSMKFKDGYMISSGQ 236

Query: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRP 360
           PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEE+FIRP
Sbjct: 301 PVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEEFIRP 236

Query: 361 VAVIPTAEIEVEAA 375
            AVIPTAEIEV AA
Sbjct: 361 AAVIPTAEIEVAAA 236

[Close]

BLAST of CmoCh17G006690 vs. TAIR 10
Match: AT5G35530.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 340.5 bits (872), Expect = 1.7e-93
Identity = 198/330 (60.00%), Postives = 211/330 (63.94%), Query Frame = 0


Query: 44  QFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTR 103
           +FVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL          
Sbjct: 10  KFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL---------- 69

Query: 104 VLMSLLLDLVSDYVFNCVAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAI 163
                               GEKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAI
Sbjct: 70  --------------------GEKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAI 129

Query: 164 AQAESLRYKLLGGLAVRRYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLT 223
           AQAESLRYKLLGGLAVR                                           
Sbjct: 130 AQAESLRYKLLGGLAVR------------------------------------------- 189

Query: 224 PYFGNHSYSALLFHFSRACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQ 283
                           RACYGVLRFVMESGAKGCE               VIVSGKLRA 
Sbjct: 190 ----------------RACYGVLRFVMESGAKGCE---------------VIVSGKLRAA 235

Query: 284 RAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLP 343
           RAKSMKFKDGYM+SSGQP KEYID+AVRHVLLRQGVLG+KVKIMLDWDPKGKQGP TPLP
Sbjct: 250 RAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLP 235

Query: 344 DLVTIHTPKEEEDFIRPVAVIPTAEIEVEA 374
           D+V IHTPKE++ +I P  V+  A    EA
Sbjct: 310 DVVIIHTPKEDDVYIAPAQVVTQAAFVPEA 235

[Close]

BLAST of CmoCh17G006690 vs. TAIR 10
Match: AT3G53870.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 335.9 bits (860), Expect = 4.2e-92
Identity = 197/330 (59.70%), Postives = 207/330 (62.73%), Query Frame = 0


Query: 44  QFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTR 103
           +FVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL          
Sbjct: 10  KFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL---------- 69

Query: 104 VLMSLLLDLVSDYVFNCVAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAI 163
                               GEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAI
Sbjct: 70  --------------------GEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAI 129

Query: 164 AQAESLRYKLLGGLAVRRYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLT 223
           AQAESLRYKLLGGLAVR                                           
Sbjct: 130 AQAESLRYKLLGGLAVR------------------------------------------- 189

Query: 224 PYFGNHSYSALLFHFSRACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQ 283
                           RACYGVLRFVMESGAKGCE               VIVSGKLRA 
Sbjct: 190 ----------------RACYGVLRFVMESGAKGCE---------------VIVSGKLRAA 235

Query: 284 RAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLP 343
           RAKSMKFKDGYM+SSGQP KEYIDSAVRHVLLRQGVLGIKVK+MLDWDPKG  GP TPLP
Sbjct: 250 RAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLP 235

Query: 344 DLVTIHTPKEEEDFIRPVAVIPTAEIEVEA 374
           D+V IH+PKEEE    P  V   A +  +A
Sbjct: 310 DVVIIHSPKEEEAIYAPAQVAAPAALVADA 235

[Close]

BLAST of CmoCh17G006690 vs. TAIR 10
Match: AT2G31610.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 328.2 bits (840), Expect = 8.8e-90
Identity = 193/330 (58.48%), Postives = 204/330 (61.82%), Query Frame = 0


Query: 44  QFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLEVIGAVCLTR 103
           +FVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL          
Sbjct: 10  KFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL---------- 69

Query: 104 VLMSLLLDLVSDYVFNCVAIGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAI 163
                               GEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAI
Sbjct: 70  --------------------GEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAI 129

Query: 164 AQAESLRYKLLGGLAVRRYNRNYGCFWKLLVLGSCNIIMMKIFLDTDCLVWNYVVFTRLT 223
           AQAESLRYKLLGGLAVR                                           
Sbjct: 130 AQAESLRYKLLGGLAVR------------------------------------------- 189

Query: 224 PYFGNHSYSALLFHFSRACYGVLRFVMESGAKGCEVSPNFIFIEFVLDGLVIVSGKLRAQ 283
                           RACYGVLRFVMESGAKGCE               VIVSGKLRA 
Sbjct: 190 ----------------RACYGVLRFVMESGAKGCE---------------VIVSGKLRAA 235

Query: 284 RAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLP 343
           RAKSMKFKDGYM+SSGQP KEYID+AVRHVLLRQGVLGIKVKIMLDWDP GK GP TPLP
Sbjct: 250 RAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLP 235

Query: 344 DLVTIHTPKEEEDFIRPVAVIPTAEIEVEA 374
           D+V IH PK++  +  P        +  EA
Sbjct: 310 DVVIIHAPKDDVVYSAPAQAAAPVTLVQEA 235

The following BLAST results are available for this feature:

BLAST of CmoCh17G006690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJA6	2.4e-92	60.00	40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1	[more]
Q9M339	5.9e-91	59.70	40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1	[more]
Q9SIP7	1.2e-88	58.48	40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1	[more]
P02350	9.8e-78	54.22	40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2	[more]
E2RH47	4.9e-77	54.60	40S ribosomal protein S3 OS=Canis lupus familiaris OX=9615 GN=RPS3 PE=1 SV=1	[more]

BLAST of CmoCh17G006690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQ60	2.0e-105	63.20	40S ribosomal protein S3-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456093 PE...	[more]
A0A6J1JPM9	1.3e-104	62.93	40S ribosomal protein S3-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488704 PE=3...	[more]
A0A6J1D813	8.3e-104	62.57	40S ribosomal protein S3-3 OS=Momordica charantia OX=3673 GN=LOC111017761 PE=3 S...	[more]
A0A6J1KD29	4.1e-103	62.30	40S ribosomal protein S3-3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11149451...	[more]
A0A5D3BYH2	9.2e-103	62.67	40S ribosomal protein S3-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of CmoCh17G006690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953609.1	4.1e-105	63.20	40S ribosomal protein S3-3-like [Cucurbita moschata] >KAG6575449.1 40S ribosomal...	[more]
XP_023547512.1	1.2e-104	62.93	40S ribosomal protein S3-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022992377.1	2.6e-104	62.93	40S ribosomal protein S3-3-like [Cucurbita maxima]	[more]
XP_022149321.1	1.7e-103	62.57	40S ribosomal protein S3-3 [Momordica charantia]	[more]
XP_023514160.1	5.0e-103	62.30	40S ribosomal protein S3-3 [Cucurbita pepo subsp. pepo] >KAG7025887.1 40S riboso...	[more]

BLAST of CmoCh17G006690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35530.1	1.7e-93	60.00	Ribosomal protein S3 family protein	[more]
AT3G53870.1	4.2e-92	59.70	Ribosomal protein S3 family protein	[more]
AT2G31610.1	8.8e-90	58.48	Ribosomal protein S3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 39..104 e-value: 1.8E-23 score: 84.4
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 120..156 e-value: 7.7E-13 score: 50.2
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	GENE3D	3.30.1140.32		coord: 231..262 e-value: 2.1E-6 score: 29.7 coord: 269..357 e-value: 3.1E-40 score: 139.0
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	GENE3D	3.30.1140.32		coord: 157..192 e-value: 5.8E-5 score: 25.0
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	SUPERFAMILY	54821	Ribosomal protein S3 C-terminal domain	coord: 237..329
IPR001351	Ribosomal protein S3, C-terminal	PFAM	PF00189	Ribosomal_S3_C	coord: 274..326 e-value: 2.6E-13 score: 50.3
None	No IPR available	PANTHER	PTHR11760:SF52	40S RIBOSOMAL PROTEIN S3-RELATED	coord: 239..372 coord: 123..188 coord: 43..97
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 239..372 coord: 123..188 coord: 43..97
None	No IPR available	CDD	cd02413	40S_S3_KH	coord: 49..159 e-value: 1.4647E-45 score: 149.295
IPR018280	Ribosomal protein S3, conserved site	PROSITE	PS00548	RIBOSOMAL_S3	coord: 285..321
IPR009019	K homology domain superfamily, prokaryotic type	SUPERFAMILY	54814	Prokaryotic type KH domain (KH-domain type II)	coord: 121..163
IPR009019	K homology domain superfamily, prokaryotic type	SUPERFAMILY	54814	Prokaryotic type KH domain (KH-domain type II)	coord: 44..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G006690.1	CmoCh17G006690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome