CmoCh17G005960 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G005960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein SHORT-ROOT-like
Location	Cmo_Chr17: 6345899 .. 6347742 (-)
RNA-Seq Expression	CmoCh17G005960
Synteny	CmoCh17G005960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGTGAAACATAGCCTTTTTTAAAAAAATTTATTTTCTCCATAAGAAATTATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAACCTTCTTCAACCAAAGCCATGATCACCATCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCTTCCGAGTACTCGCCCGAACAATCTCCATCTGCTGCTGCTGCTGCTGCTGCTACTTTGGCCGCCACCGGAAAATGGTCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCCATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTAGCTTCCCCTTATGGTGACTCCGATCAGAAAATGGCTTCCTACTTCCTCCAAGCTCTCTTCTGCAAGGCCACTGAAACTGGCCTCACTTGCTATAAAACCCTTGTCGCCATCGCCGACAAGAATCATTCCTTCGACTCTTCCCTCAAGCTCATCCTCAAATTCCAAGAGGTTTGTTCCGATTCGATTAGGTTAACGTAAATTTAATATCTTGTTCGATTCTTCTTTTCATCGGTGAGTTATGTTATGATCAGGGATTGAGTGAGAATTTGAACCTTCAAATTTAAAAGAAAAAGGTCGAATTTTTATATTAAAAATTTAAAGTTAAGCTAATGGGTTATGGTAAATTTGAATTTTATGTCAGGCAAGTCCATGGACAACATTCGGGCATGTCGCATCGAACGGTGCGATTCTCGAAGCTCTCGAGGGAGAAACCAAGCTCCATATCATCGATATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACGCGCAATGATGACACTCCACATCTCAAGCTCACCGTGGTCACAACAACAACCATTGTTAAGTCTCTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGTTAATGGGAGTCCCGTTCGAGTTTAACCCGATAACGAATCTCGAAAACTTAACCGACCTTACAAAAGAAGCACTCAAAGTAGAAGAAGATGAAGCCATTGCCATAAATTGCATTGGAGCTTTAAGAAGAGTGAGAATTGAAGAAAGAAACAATGTGGTTTCAATGTTAAAATCATTAAAGCCTCGAGTTTTGACAATTGTAGAGGAAGAAGCTGACTTCATAAGCTCAAAAAACAACTTCTTGAAGTGTTTTGAAGAATGTCTTCGATTCTACACTCTTTACTTTGACATGTTGGAAGAGAGCTTTGTGACAACAAGCAATGAGAGATTGGTATTAGAAAGAGAGTGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGCGATGAAAGTGAAGAACAAATGGGGAGTGAGAAGAGAGAAAAAGGAAAACAATGGAGCAAAAGGCTGAAAGAATCAGCCTTTTCATTAGCTGAATTTAGTGAAGATGTATTGGATGATGTTAAGGCTTTGCTCAAAAGGTACAAACCCGGTTGGGCGCTTCTGCGTCGAGCTGCCACCACCGCCACCGGAAAAGTACACGAAAGAGACGACGATTCGTGTGGAGTTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAGAGGAATTTGTCATTTACTATTATAATACCACTCTATATTCATAAAGGAGTTCTTCATTTTGTATGAAAATTGTTATATATATGTCTAGATTTTGTATTCAAATTCTTAATTTCTTGGGGTGCTTTAATGGTTTTGCTTGGTTCTTTTTTGTTTATGGATGGACTTTGCTTAGTTTCATATGAGTAGCAACTTCATACATTGTATGATACCAATATCAAGCAATAGGAATATTCTATGGAG

mRNA sequence

AATTGTGAAACATAGCCTTTTTTAAAAAAATTTATTTTCTCCATAAGAAATTATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAACCTTCTTCAACCAAAGCCATGATCACCATCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCTTCCGAGTACTCGCCCGAACAATCTCCATCTGCTGCTGCTGCTGCTGCTGCTACTTTGGCCGCCACCGGAAAATGGTCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCCATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTAGCTTCCCCTTATGGTGACTCCGATCAGAAAATGGCTTCCTACTTCCTCCAAGCTCTCTTCTGCAAGGCCACTGAAACTGGCCTCACTTGCTATAAAACCCTTGTCGCCATCGCCGACAAGAATCATTCCTTCGACTCTTCCCTCAAGCTCATCCTCAAATTCCAAGAGGCAAGTCCATGGACAACATTCGGGCATGTCGCATCGAACGGTGCGATTCTCGAAGCTCTCGAGGGAGAAACCAAGCTCCATATCATCGATATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACGCGCAATGATGACACTCCACATCTCAAGCTCACCGTGGTCACAACAACAACCATTGTTAAGTCTCTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGTTAATGGGAGTCCCGTTCGAGTTTAACCCGATAACGAATCTCGAAAACTTAACCGACCTTACAAAAGAAGCACTCAAAGTAGAAGAAGATGAAGCCATTGCCATAAATTGCATTGGAGCTTTAAGAAGAGTGAGAATTGAAGAAAGAAACAATGTGGTTTCAATGTTAAAATCATTAAAGCCTCGAGTTTTGACAATTGTAGAGGAAGAAGCTGACTTCATAAGCTCAAAAAACAACTTCTTGAAGTGTTTTGAAGAATGTCTTCGATTCTACACTCTTTACTTTGACATGTTGGAAGAGAGCTTTGTGACAACAAGCAATGAGAGATTGGTATTAGAAAGAGAGTGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGCGATGAAAGTGAAGAACAAATGGGGAGTGAGAAGAGAGAAAAAGGAAAACAATGGAGCAAAAGGCTGAAAGAATCAGCCTTTTCATTAGCTGAATTTAGTGAAGATGTATTGGATGATGTTAAGGCTTTGCTCAAAAGGTACAAACCCGGTTGGGCGCTTCTGCGTCGAGCTGCCACCACCGCCACCGGAAAAGTACACGAAAGAGACGACGATTCGTGTGGAGTTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAGAGGAATTTGTCATTTACTATTATAATACCACTCTATATTCATAAAGGAGTTCTTCATTTTGTATGAAAATTGTTATATATATGTCTAGATTTTGTATTCAAATTCTTAATTTCTTGGGGTGCTTTAATGGTTTTGCTTGGTTCTTTTTTGTTTATGGATGGACTTTGCTTAGTTTCATATGAGTAGCAACTTCATACATTGTATGATACCAATATCAAGCAATAGGAATATTCTATGGAG

Coding sequence (CDS)

ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAACCTTCTTCAACCAAAGCCATGATCACCATCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCTTCCGAGTACTCGCCCGAACAATCTCCATCTGCTGCTGCTGCTGCTGCTGCTACTTTGGCCGCCACCGGAAAATGGTCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCCATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTAGCTTCCCCTTATGGTGACTCCGATCAGAAAATGGCTTCCTACTTCCTCCAAGCTCTCTTCTGCAAGGCCACTGAAACTGGCCTCACTTGCTATAAAACCCTTGTCGCCATCGCCGACAAGAATCATTCCTTCGACTCTTCCCTCAAGCTCATCCTCAAATTCCAAGAGGCAAGTCCATGGACAACATTCGGGCATGTCGCATCGAACGGTGCGATTCTCGAAGCTCTCGAGGGAGAAACCAAGCTCCATATCATCGATATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACGCGCAATGATGACACTCCACATCTCAAGCTCACCGTGGTCACAACAACAACCATTGTTAAGTCTCTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGTTAATGGGAGTCCCGTTCGAGTTTAACCCGATAACGAATCTCGAAAACTTAACCGACCTTACAAAAGAAGCACTCAAAGTAGAAGAAGATGAAGCCATTGCCATAAATTGCATTGGAGCTTTAAGAAGAGTGAGAATTGAAGAAAGAAACAATGTGGTTTCAATGTTAAAATCATTAAAGCCTCGAGTTTTGACAATTGTAGAGGAAGAAGCTGACTTCATAAGCTCAAAAAACAACTTCTTGAAGTGTTTTGAAGAATGTCTTCGATTCTACACTCTTTACTTTGACATGTTGGAAGAGAGCTTTGTGACAACAAGCAATGAGAGATTGGTATTAGAAAGAGAGTGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGCGATGAAAGTGAAGAACAAATGGGGAGTGAGAAGAGAGAAAAAGGAAAACAATGGAGCAAAAGGCTGAAAGAATCAGCCTTTTCATTAGCTGAATTTAGTGAAGATGTATTGGATGATGTTAAGGCTTTGCTCAAAAGGTACAAACCCGGTTGGGCGCTTCTGCGTCGAGCTGCCACCACCGCCACCGGAAAAGTACACGAAAGAGACGACGATTCGTGTGGAGTTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAG

Protein sequence

MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATTATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP

Homology

[Close]

BLAST of CmoCh17G005960 vs. ExPASy Swiss-Prot
Match: Q9SZF7 (Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 6.9e-110
Identity = 220/481 (45.74%), Postives = 310/481 (64.45%), Query Frame = 0


Query: 17  NQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQS--PSAAAAAAA----------------- 76
           + S  H+HH H +     S  +  ++Y P  S  PS+ AAAAA                 
Sbjct: 66  SSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSSGHHNDPSAF 125

Query: 77  ---------TLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAS 136
                      +A  KW+ ++L E ARA S+KD+ +    LW LNEL+SPYGD++QK+AS
Sbjct: 126 SIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLAS 185

Query: 137 YFLQALFCKATETGLTCYKTLV--AIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGA 196
           YFLQALF + T +G  CY+T+V  A  +K  SF+S+ K +LKFQE SPW TFGHVA+NGA
Sbjct: 186 YFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGA 245

Query: 197 ILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT-------TIVK 256
           ILEA++GE K+HI+DIS+T CTQWPTLLE+LATR+DDTPHL+LT V          T   
Sbjct: 246 ILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASH 305

Query: 257 SLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRV- 316
            +MKEIG RMEKFARLMGVPF+FN I ++ +L++     L V+ DE +AINC+GA+  + 
Sbjct: 306 RMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGIA 365

Query: 317 -RIEERNNVVSMLKSLKPRVLTIVEEEADFISSK-----NNFLKCFEECLRFYTLYFDML 376
            R   R+ V+S  + L+PR++T+VEEEAD +  +     + FL+ F ECLR++ + F+  
Sbjct: 366 SRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESW 425

Query: 377 EESFVTTSNERLVLERECSRSIVRLLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEF 436
           EESF  TSNERL+LER   R+IV L+ C+ S+    +E+RE  ++WS+R++ S F    +
Sbjct: 426 EESFPRTSNERLMLERAAGRAIVDLVACEPSD---STERRETARKWSRRMRNSGFGAVGY 485

Query: 437 SEDVLDDVKALLKRYKPG-WALLRRAATTATGKVHERDDDSCGVYLTWKEEPVVWVSAWK 453
           S++V DDV+ALL+RYK G W+++             +  D+ G++L W+++PVVW SAW+
Sbjct: 486 SDEVADDVRALLRRYKEGVWSMV-------------QCPDAAGIFLCWRDQPVVWASAWR 530

[Close]

BLAST of CmoCh17G005960 vs. ExPASy Swiss-Prot
Match: A2YN56 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 9.6e-104
Identity = 218/461 (47.29%), Postives = 291/461 (63.12%), Query Frame = 0


Query: 30  NLDMQSSTSHSSEYSPEQSPSAAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHFL 89
           NLD  S  S S           A++ A      G+W+S LL ECAR+++ +DS ++   +
Sbjct: 163 NLDFSSPASSS-------GGGTASSGAVGGGGGGRWASQLLLECARSVAARDSQRVQQLM 222

Query: 90  WMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKF 149
           WMLNELASPYGD +QK+ASYFLQ LF + T +G    +TL A +D+N SFDS+ +  L+F
Sbjct: 223 WMLNELASPYGDVEQKLASYFLQGLFARLTASGQRTLRTLAAASDRNTSFDSTRRTALRF 282

Query: 150 QEASPWTTFGHVASNGAILE-------ALEGET-KLHIIDISNTLCTQWPTLLESLATRN 209
           QE SPW++FGHVA+NGAILE       A   ET + HI+D+SNT CTQWPTLLE+LATR+
Sbjct: 283 QELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRS 342

Query: 210 -DDTPHLKLTVVTT------TTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDL 269
            D+TPHL +T V +      T  V+ +M+EIGQRMEKFARLMGVPF F  + +  +L +L
Sbjct: 343 ADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAEL 402

Query: 270 TKEALKVEE---DEAIAINCIGALRRV---RIEERNNVVSMLKSLKPRVLTIVEEEADFI 329
             +AL + E     A+A+NC+ +LR V   R   R+   + L+ L PRV+T+VEEEAD +
Sbjct: 403 DLDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLV 462

Query: 330 SSKNN--------------FLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSI 389
           +S  +              FLK F E LRF++ Y D LEESF  TSNERL LER   R+I
Sbjct: 463 ASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERGAGRAI 522

Query: 390 VRLLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALL 449
           V L+ C  SE     E+RE    W++R++ + FS   FSEDV DDV++LL+RY+ GW+ +
Sbjct: 523 VDLVSCPASESM---ERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYREGWS-M 582

Query: 450 RRAATTATGKVHERDDDS---CGVYLTWKEEPVVWVSAWKP 453
           R A T          DDS    GV+L WKE+P+VW SAW+P
Sbjct: 583 REAGT----------DDSAAGAGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of CmoCh17G005960 vs. ExPASy Swiss-Prot
Match: Q8H2X8 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2)

HSP 1 Score: 378.3 bits (970), Expect = 1.3e-103
Identity = 218/461 (47.29%), Postives = 291/461 (63.12%), Query Frame = 0


Query: 30  NLDMQSSTSHSSEYSPEQSPSAAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHFL 89
           NLD  S  S S           A++ A      G+W+S LL ECAR+++ +DS ++   +
Sbjct: 163 NLDFSSPASSS-------GGGTASSGAVGGGGGGRWASQLLLECARSVAARDSQRVQQLM 222

Query: 90  WMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKF 149
           WMLNELASPYGD +QK+ASYFLQ LF + T +G    +TL A +D+N SFDS+ +  L+F
Sbjct: 223 WMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNTSFDSTRRTALRF 282

Query: 150 QEASPWTTFGHVASNGAILE-------ALEGET-KLHIIDISNTLCTQWPTLLESLATRN 209
           QE SPW++FGHVA+NGAILE       A   ET + HI+D+SNT CTQWPTLLE+LATR+
Sbjct: 283 QELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRS 342

Query: 210 -DDTPHLKLTVVTT------TTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDL 269
            D+TPHL +T V +      T  V+ +M+EIGQRMEKFARLMGVPF F  + +  +L +L
Sbjct: 343 ADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAEL 402

Query: 270 TKEALKVEE---DEAIAINCIGALRRV---RIEERNNVVSMLKSLKPRVLTIVEEEADFI 329
             +AL + E     A+A+NC+ +LR V   R   R+   + L+ L PRV+T+VEEEAD +
Sbjct: 403 DLDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLV 462

Query: 330 SSKNN--------------FLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSI 389
           +S  +              FLK F E LRF++ Y D LEESF  TSNERL LER   R+I
Sbjct: 463 ASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERGAGRAI 522

Query: 390 VRLLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALL 449
           V L+ C  SE     E+RE    W++R++ + FS   FSEDV DDV++LL+RY+ GW+ +
Sbjct: 523 VDLVSCPASESM---ERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYREGWS-M 582

Query: 450 RRAATTATGKVHERDDDS---CGVYLTWKEEPVVWVSAWKP 453
           R A T          DDS    GV+L WKE+P+VW SAW+P
Sbjct: 583 REAGT----------DDSAAGAGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of CmoCh17G005960 vs. ExPASy Swiss-Prot
Match: A2XIA8 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 2.1e-103
Identity = 222/479 (46.35%), Postives = 293/479 (61.17%), Query Frame = 0


Query: 13  TTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAATLAATGKWSSTLLKE 72
           TT     H       FS   +  S       +   S  A A A A  +++G+W++ LL E
Sbjct: 135 TTSSAGGHGLFEAADFSFPQVDISLDFGGSPAVPSSSGAGAGAGAAPSSSGRWAAQLLME 194

Query: 73  CARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAI 132
           CARA++ +DS ++   +WMLNELASPYGD DQK+ASYFLQ LF + T +G    +TL   
Sbjct: 195 CARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLATA 254

Query: 133 ADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEA-LEG------------------ 192
           +D+N SFDS+ +  LKFQE SPWT FGHVA+NGAILE+ LE                   
Sbjct: 255 SDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAGAAAASSSSSSSSTP 314

Query: 193 ETKLHIIDISNTLCTQWPTLLESLATR-NDDTPHLKLTVVTTT----TIVKSLMKEIGQR 252
            T+LHI+D+SNT CTQWPTLLE+LATR +DDTPHL +T V  T       + +M+EIGQR
Sbjct: 315 PTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQR 374

Query: 253 MEKFARLMGVPFEFNPITNLENLTDLTKEALKVEE---DEAIAINCIGALRRVRIEERNN 312
           +EKFARLMGVPF F  + +  +L DL   AL + E     A+A+NC+ ALR V    R+ 
Sbjct: 375 LEKFARLMGVPFSFRAVHHAGDLADLDLAALDLREGGATAALAVNCVNALRGV-ARGRDA 434

Query: 313 VVSMLKSLKPRVLTIVEEEADFISSKNN----------FLKCFEECLRFYTLYFDMLEES 372
            V+ L+ L+PRV+T+VEEEAD  + + +          F+K F E LRF++ Y D LEES
Sbjct: 435 FVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEGLRFFSAYMDSLEES 494

Query: 373 FVTTSNERLVLERECSRSIVRLLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSED 432
           F  TSNERL LER   R+IV L+ C  S+    +E+RE    W++R++ + FS A FSED
Sbjct: 495 FPKTSNERLSLERAVGRAIVDLVSCPASQ---SAERRETAASWARRMRSAGFSPAAFSED 554

Query: 433 VLDDVKALLKRYKPGWALLRRAATT--ATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 453
           V DDV++LL+RYK GW++      T  A G        + G +L WKE+PVVW SAWKP
Sbjct: 555 VADDVRSLLRRYKEGWSMRDAGGATDDAAGAA------AAGAFLAWKEQPVVWASAWKP 603

[Close]

BLAST of CmoCh17G005960 vs. ExPASy Swiss-Prot
Match: Q75I13 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 2.8e-103
Identity = 222/479 (46.35%), Postives = 293/479 (61.17%), Query Frame = 0


Query: 13  TTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAATLAATGKWSSTLLKE 72
           TT     H       FS   +  S       +   S  A A A A  +++G+W++ LL E
Sbjct: 135 TTSSAGGHGLFEAADFSFPQVDISLDFGGSPAVPSSSGAGAGAGAAPSSSGRWAAQLLME 194

Query: 73  CARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAI 132
           CARA++ +DS ++   +WMLNELASPYGD DQK+ASYFLQ LF + T +G    +TL   
Sbjct: 195 CARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLATA 254

Query: 133 ADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEA-LEG------------------ 192
           +D+N SFDS+ +  LKFQE SPWT FGHVA+NGAILE+ LE                   
Sbjct: 255 SDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAGAAASSSSSSSSSTP 314

Query: 193 ETKLHIIDISNTLCTQWPTLLESLATR-NDDTPHLKLTVVTTT----TIVKSLMKEIGQR 252
            T+LHI+D+SNT CTQWPTLLE+LATR +DDTPHL +T V  T       + +M+EIGQR
Sbjct: 315 PTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQR 374

Query: 253 MEKFARLMGVPFEFNPITNLENLTDLTKEALKVEE---DEAIAINCIGALRRVRIEERNN 312
           +EKFARLMGVPF F  + +  +L DL   AL + E     A+A+NC+ ALR V    R+ 
Sbjct: 375 LEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNCVNALRGV-ARGRDA 434

Query: 313 VVSMLKSLKPRVLTIVEEEADFISSKNN----------FLKCFEECLRFYTLYFDMLEES 372
            V+ L+ L+PRV+T+VEEEAD  + + +          F+K F E LRF++ Y D LEES
Sbjct: 435 FVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEGLRFFSAYMDSLEES 494

Query: 373 FVTTSNERLVLERECSRSIVRLLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSED 432
           F  TSNERL LER   R+IV L+ C  S+    +E+RE    W++R++ + FS A FSED
Sbjct: 495 FPKTSNERLSLERAVGRAIVDLVSCPASQ---SAERRETAASWARRMRSAGFSPAAFSED 554

Query: 433 VLDDVKALLKRYKPGWALLRRAATT--ATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 453
           V DDV++LL+RYK GW++      T  A G        + G +L WKE+PVVW SAWKP
Sbjct: 555 VADDVRSLLRRYKEGWSMRDAGGATDDAAGAA------AAGAFLAWKEQPVVWASAWKP 603

[Close]

BLAST of CmoCh17G005960 vs. ExPASy TrEMBL
Match: A0A6J1EZH2 (protein SHORT-ROOT-like OS=Cucurbita moschata OX=3662 GN=LOC111440607 PE=3 SV=1)

HSP 1 Score: 892.5 bits (2305), Expect = 7.3e-256
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAATLA 60
           MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAATLA
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAATLA 60

Query: 61  ATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATE 120
           ATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATE
Sbjct: 61  ATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATE 120

Query: 121 TGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHII 180
           TGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHII
Sbjct: 121 TGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHII 180

Query: 181 DISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVPF 240
           DISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVPF
Sbjct: 181 DISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVPF 240

Query: 241 EFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLTI 300
           EFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLTI
Sbjct: 241 EFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLTI 300

Query: 301 VEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLGC 360
           VEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLGC
Sbjct: 301 VEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLGC 360

Query: 361 DESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATT 420
           DESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATT
Sbjct: 361 DESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATT 420

Query: 421 ATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 453
           ATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP
Sbjct: 421 ATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 452

[Close]

BLAST of CmoCh17G005960 vs. ExPASy TrEMBL
Match: A0A6J1JX21 (protein SHORT-ROOT-like OS=Cucurbita maxima OX=3661 GN=LOC111488628 PE=3 SV=1)

HSP 1 Score: 878.6 bits (2269), Expect = 1.1e-251
Identity = 448/455 (98.46%), Postives = 452/455 (99.34%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS-AAAAAAATL 60
           MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS AAAAAAATL
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAATL 60

Query: 61  AATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKAT 120
           AATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKAT
Sbjct: 61  AATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKAT 120

Query: 121 ETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHI 180
           ETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHI
Sbjct: 121 ETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHI 180

Query: 181 IDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVP 240
           IDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVP
Sbjct: 181 IDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVP 240

Query: 241 FEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLT 300
           FEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNV+SMLKSLKPRVLT
Sbjct: 241 FEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVISMLKSLKPRVLT 300

Query: 301 IVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLG 360
           IVEEEADFISSKNNFLKCFEECLRFYTLYFDMLE+SFVTTSNERLVLERECSRSIVRLLG
Sbjct: 301 IVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLVLERECSRSIVRLLG 360

Query: 361 CDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAAT 420
           CDESEEQMGSE+REKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAAT
Sbjct: 361 CDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAAT 420

Query: 421 --TATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 453
             TATG+VHERDDDSCGVYLTWKEEPVVWVSAWKP
Sbjct: 421 TATATGEVHERDDDSCGVYLTWKEEPVVWVSAWKP 455

[Close]

BLAST of CmoCh17G005960 vs. ExPASy TrEMBL
Match: A0A0A0K966 (GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G081510 PE=3 SV=1)

HSP 1 Score: 785.0 bits (2026), Expect = 1.6e-223
Identity = 398/460 (86.52%), Postives = 425/460 (92.39%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHH-----HHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAA 60
           MDITFFTAKEAPT+FFNQSHDH      HHLHFSNLDMQSSTSHSSEYSPE SPS AAAA
Sbjct: 1   MDITFFTAKEAPTSFFNQSHDHRHHHQLHHLHFSNLDMQSSTSHSSEYSPEHSPS-AAAA 60

Query: 61  AATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALF 120
           AAT  ATGKW+STLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMA YFLQALF
Sbjct: 61  AATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAFYFLQALF 120

Query: 121 CKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGET 180
           C+ATETGLTCYKTLVA+A+KNH+FDS+L+LILKFQEASPWTTFGHVASNGAILEALEGET
Sbjct: 121 CRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGET 180

Query: 181 KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARL 240
           KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT+IVK LMKEIGQRMEKFARL
Sbjct: 181 KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARL 240

Query: 241 MGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKP 300
           MGVPFEFNPITN+++LTDLT EALKVEE EAIAINCIGALRRV++EERNNV+SMLKSLKP
Sbjct: 241 MGVPFEFNPITNIDHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKSLKP 300

Query: 301 RVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIV 360
           RVLTIVEEEADFISSKN+FLKCFEECLRFYTLYF+MLEESFV TSNERLVLERECSRSIV
Sbjct: 301 RVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIV 360

Query: 361 RLLGCDE---SEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWA 420
           RLLGCD    SEE++GSE+REKGKQW+KRLK++ FS A FSEDV+DDVKALLKRYKPGWA
Sbjct: 361 RLLGCDHDQISEEEIGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGWA 420

Query: 421 LLRRAATTATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 453
           LLR A      +    D +S G+YLTWKEEPVVWVSAWKP
Sbjct: 421 LLRPATAAVRDEEENGDGESSGIYLTWKEEPVVWVSAWKP 459

[Close]

BLAST of CmoCh17G005960 vs. ExPASy TrEMBL
Match: A0A1S3CCT8 (protein SHORT-ROOT-like OS=Cucumis melo OX=3656 GN=LOC103498966 PE=3 SV=1)

HSP 1 Score: 778.5 bits (2009), Expect = 1.5e-221
Identity = 400/463 (86.39%), Postives = 425/463 (91.79%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHD------HHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAA 60
           MDITFFT KEAPT+FFNQSHD      HHHHLHFSNLDMQSSTSHSSEYSPE SPS AAA
Sbjct: 1   MDITFFTPKEAPTSFFNQSHDHRHHHHHHHHLHFSNLDMQSSTSHSSEYSPEHSPS-AAA 60

Query: 61  AAATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQAL 120
           AAAT  ATGKW+STLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQAL
Sbjct: 61  AAATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQAL 120

Query: 121 FCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGE 180
           FC+ATETGLTCYKTLVA+A+KNH+FDS+L+LILKFQEASPWTTFGHVASNGAILEALEGE
Sbjct: 121 FCRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGE 180

Query: 181 TKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFAR 240
           TKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT+IVK LMKEIGQRMEKFAR
Sbjct: 181 TKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFAR 240

Query: 241 LMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLK 300
           LMGVPFEFNPITN+ +LTDLT EALKVEE EAIAINCIGALRRV++EERNNV+SMLK LK
Sbjct: 241 LMGVPFEFNPITNINHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKLLK 300

Query: 301 PRVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSI 360
           PRVLTIVEEEADFISS N+FLKCFEECLRFYTLYF+MLEESF  TSNERLVLERECSRSI
Sbjct: 301 PRVLTIVEEEADFISSTNDFLKCFEECLRFYTLYFEMLEESFGATSNERLVLERECSRSI 360

Query: 361 VRLLGCDE---SEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGW 420
           VRLLGCD    SEE+MGSE+REKGKQW+KRLK++ FS A FSEDV+DDVKALLKRYKPGW
Sbjct: 361 VRLLGCDHDQISEEEMGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGW 420

Query: 421 ALLRRAATTATGKVHERDDDS--CGVYLTWKEEPVVWVSAWKP 453
           ALL R AT A G   E + D+   G+YLTWKEEPVVWVSAWKP
Sbjct: 421 ALL-RPATAAVGVDEEENGDAEPSGIYLTWKEEPVVWVSAWKP 461

[Close]

BLAST of CmoCh17G005960 vs. ExPASy TrEMBL
Match: A0A5A7T902 (Protein SHORT-ROOT-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001130 PE=3 SV=1)

HSP 1 Score: 721.5 bits (1861), Expect = 2.2e-204
Identity = 370/425 (87.06%), Postives = 394/425 (92.71%), Query Frame = 0


Query: 33  MQSSTSHSSEYSPEQSPSAAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHFLWML 92
           MQSSTSHSSEYSPE SPS AAAAAAT  ATGKW+STLLKECARAISEKDSNKIHHFLWML
Sbjct: 1   MQSSTSHSSEYSPEHSPS-AAAAAATATATGKWASTLLKECARAISEKDSNKIHHFLWML 60

Query: 93  NELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEA 152
           NELASPYGDSDQKMASYFLQALFC+ATETGLTCYKTLVA+A+KNH+FDS+L+LILKFQEA
Sbjct: 61  NELASPYGDSDQKMASYFLQALFCRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEA 120

Query: 153 SPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVV 212
           SPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVV
Sbjct: 121 SPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVV 180

Query: 213 TTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCI 272
           TTT+IVK LMKEIGQRMEKFARLMGVPFEFNPITN+ +LTDLT EALKVEE EAIAINCI
Sbjct: 181 TTTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNINHLTDLTNEALKVEEGEAIAINCI 240

Query: 273 GALRRVRIEERNNVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDML 332
           GALRRV++EERNNV+SMLK LKPRVLTIVEEEADFISS N+FLKCFEECLRFYTLYF+ML
Sbjct: 241 GALRRVKVEERNNVISMLKLLKPRVLTIVEEEADFISSTNDFLKCFEECLRFYTLYFEML 300

Query: 333 EESFVTTSNERLVLERECSRSIVRLLGCDE---SEEQMGSEKREKGKQWSKRLKESAFSL 392
           EESF  TSNERLVLERECSRSIVRLLGCD    SEE+MGSE+REKGKQW+KRLK++ FS 
Sbjct: 301 EESFGATSNERLVLERECSRSIVRLLGCDHDQISEEEMGSERREKGKQWTKRLKQALFSS 360

Query: 393 AEFSEDVLDDVKALLKRYKPGWALLRRAATTATGKVHERDDDS--CGVYLTWKEEPVVWV 452
           A FSEDV+DDVKALLKRYKPGWALL R AT A G   E + D+   G+YLTWKEEPVVWV
Sbjct: 361 ANFSEDVMDDVKALLKRYKPGWALL-RPATAAVGVDEEENGDAEPSGIYLTWKEEPVVWV 420

[Close]

BLAST of CmoCh17G005960 vs. NCBI nr
Match: XP_022933337.1 (protein SHORT-ROOT-like [Cucurbita moschata] >XP_022953296.1 protein SHORT-ROOT-like [Cucurbita moschata])

HSP 1 Score: 892.5 bits (2305), Expect = 1.5e-255
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAATLA 60
           MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAATLA
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAATLA 60

Query: 61  ATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATE 120
           ATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATE
Sbjct: 61  ATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATE 120

Query: 121 TGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHII 180
           TGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHII
Sbjct: 121 TGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHII 180

Query: 181 DISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVPF 240
           DISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVPF
Sbjct: 181 DISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVPF 240

Query: 241 EFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLTI 300
           EFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLTI
Sbjct: 241 EFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLTI 300

Query: 301 VEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLGC 360
           VEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLGC
Sbjct: 301 VEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLGC 360

Query: 361 DESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATT 420
           DESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATT
Sbjct: 361 DESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATT 420

Query: 421 ATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 453
           ATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP
Sbjct: 421 ATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 452

[Close]

BLAST of CmoCh17G005960 vs. NCBI nr
Match: KAG7013919.1 (Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 882.1 bits (2278), Expect = 2.0e-252
Identity = 449/456 (98.46%), Postives = 452/456 (99.12%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS----AAAAAA 60
           MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS    AAAAAA
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAA 60

Query: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120
           ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC
Sbjct: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120

Query: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180
           KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK
Sbjct: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240
           LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR 300
           GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR
Sbjct: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR 300

Query: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR 360
           VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR
Sbjct: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR 360

Query: 361 LLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420
           LLGCDESEEQMGSE+REKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR
Sbjct: 361 LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420

Query: 421 AATTATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 453
           AATTATG+VHERD+DSCGVYLTWKEEPVVWVSAWKP
Sbjct: 421 AATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP 456

[Close]

BLAST of CmoCh17G005960 vs. NCBI nr
Match: XP_022992254.1 (protein SHORT-ROOT-like [Cucurbita maxima])

HSP 1 Score: 878.6 bits (2269), Expect = 2.3e-251
Identity = 448/455 (98.46%), Postives = 452/455 (99.34%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS-AAAAAAATL 60
           MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS AAAAAAATL
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAATL 60

Query: 61  AATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKAT 120
           AATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKAT
Sbjct: 61  AATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKAT 120

Query: 121 ETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHI 180
           ETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHI
Sbjct: 121 ETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHI 180

Query: 181 IDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVP 240
           IDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVP
Sbjct: 181 IDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVP 240

Query: 241 FEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLT 300
           FEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNV+SMLKSLKPRVLT
Sbjct: 241 FEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVISMLKSLKPRVLT 300

Query: 301 IVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLG 360
           IVEEEADFISSKNNFLKCFEECLRFYTLYFDMLE+SFVTTSNERLVLERECSRSIVRLLG
Sbjct: 301 IVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLVLERECSRSIVRLLG 360

Query: 361 CDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAAT 420
           CDESEEQMGSE+REKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAAT
Sbjct: 361 CDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAAT 420

Query: 421 --TATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 453
             TATG+VHERDDDSCGVYLTWKEEPVVWVSAWKP
Sbjct: 421 TATATGEVHERDDDSCGVYLTWKEEPVVWVSAWKP 455

[Close]

BLAST of CmoCh17G005960 vs. NCBI nr
Match: XP_023548769.1 (protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 870.9 bits (2249), Expect = 4.7e-249
Identity = 444/459 (96.73%), Postives = 450/459 (98.04%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAA-TL 60
           MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAA TL
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAATTL 60

Query: 61  AATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKAT 120
           AATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKAT
Sbjct: 61  AATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKAT 120

Query: 121 ETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHI 180
           ETGLTCYKTLVAIADKNHSFD+SLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHI
Sbjct: 121 ETGLTCYKTLVAIADKNHSFDTSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHI 180

Query: 181 IDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVP 240
           IDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVP
Sbjct: 181 IDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVP 240

Query: 241 FEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLT 300
           F+FNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNV+SMLKSLKPRVLT
Sbjct: 241 FDFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVISMLKSLKPRVLT 300

Query: 301 IVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLG 360
           IVEEEADFISSKNNFLKCFEECLRFYTLYFDMLE+SFVTTSNERLVLERECSRSIVRLLG
Sbjct: 301 IVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLVLERECSRSIVRLLG 360

Query: 361 CDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAAT 420
           CDESEEQMGSE+REKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRA  
Sbjct: 361 CDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRATI 420

Query: 421 T------ATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 453
           T      ATG+VHERDDDSCGVYLTWKEEPVVWVSAWKP
Sbjct: 421 TTTTTAAATGEVHERDDDSCGVYLTWKEEPVVWVSAWKP 459

[Close]

BLAST of CmoCh17G005960 vs. NCBI nr
Match: KAG6575379.1 (Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 815.1 bits (2104), Expect = 3.1e-232
Identity = 417/424 (98.35%), Postives = 420/424 (99.06%), Query Frame = 0


Query: 33  MQSSTSHSSEYSPEQSPS----AAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHF 92
           MQSSTSHSSEYSPEQSPS    AAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHF
Sbjct: 1   MQSSTSHSSEYSPEQSPSAAAAAAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHF 60

Query: 93  LWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILK 152
           LWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILK
Sbjct: 61  LWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILK 120

Query: 153 FQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLK 212
           FQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLK
Sbjct: 121 FQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLK 180

Query: 213 LTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIA 272
           LTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIA
Sbjct: 181 LTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIA 240

Query: 273 INCIGALRRVRIEERNNVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLY 332
           INCIGALRRVRIEERNNVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLY
Sbjct: 241 INCIGALRRVRIEERNNVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLY 300

Query: 333 FDMLEESFVTTSNERLVLERECSRSIVRLLGCDESEEQMGSEKREKGKQWSKRLKESAFS 392
           FDMLEESFVTTSNERLVLERECSRSIVRLLGCDESEEQMGSE+REKGKQWSKRLKESAFS
Sbjct: 301 FDMLEESFVTTSNERLVLERECSRSIVRLLGCDESEEQMGSERREKGKQWSKRLKESAFS 360

Query: 393 LAEFSEDVLDDVKALLKRYKPGWALLRRAATTATGKVHERDDDSCGVYLTWKEEPVVWVS 452
           LAEFSEDVLDDVKALLKRYKPGWALLRRAATTATG+VHERD+DSCGVYLTWKEEPVVWVS
Sbjct: 361 LAEFSEDVLDDVKALLKRYKPGWALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVS 420

[Close]

BLAST of CmoCh17G005960 vs. TAIR 10
Match: AT4G37650.1 (GRAS family transcription factor )

HSP 1 Score: 399.1 bits (1024), Expect = 4.9e-111
Identity = 220/481 (45.74%), Postives = 310/481 (64.45%), Query Frame = 0


Query: 17  NQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQS--PSAAAAAAA----------------- 76
           + S  H+HH H +     S  +  ++Y P  S  PS+ AAAAA                 
Sbjct: 66  SSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSSGHHNDPSAF 125

Query: 77  ---------TLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAS 136
                      +A  KW+ ++L E ARA S+KD+ +    LW LNEL+SPYGD++QK+AS
Sbjct: 126 SIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLAS 185

Query: 137 YFLQALFCKATETGLTCYKTLV--AIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGA 196
           YFLQALF + T +G  CY+T+V  A  +K  SF+S+ K +LKFQE SPW TFGHVA+NGA
Sbjct: 186 YFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGA 245

Query: 197 ILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT-------TIVK 256
           ILEA++GE K+HI+DIS+T CTQWPTLLE+LATR+DDTPHL+LT V          T   
Sbjct: 246 ILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASH 305

Query: 257 SLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRV- 316
            +MKEIG RMEKFARLMGVPF+FN I ++ +L++     L V+ DE +AINC+GA+  + 
Sbjct: 306 RMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGIA 365

Query: 317 -RIEERNNVVSMLKSLKPRVLTIVEEEADFISSK-----NNFLKCFEECLRFYTLYFDML 376
            R   R+ V+S  + L+PR++T+VEEEAD +  +     + FL+ F ECLR++ + F+  
Sbjct: 366 SRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESW 425

Query: 377 EESFVTTSNERLVLERECSRSIVRLLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEF 436
           EESF  TSNERL+LER   R+IV L+ C+ S+    +E+RE  ++WS+R++ S F    +
Sbjct: 426 EESFPRTSNERLMLERAAGRAIVDLVACEPSD---STERRETARKWSRRMRNSGFGAVGY 485

Query: 437 SEDVLDDVKALLKRYKPG-WALLRRAATTATGKVHERDDDSCGVYLTWKEEPVVWVSAWK 453
           S++V DDV+ALL+RYK G W+++             +  D+ G++L W+++PVVW SAW+
Sbjct: 486 SDEVADDVRALLRRYKEGVWSMV-------------QCPDAAGIFLCWRDQPVVWASAWR 530

[Close]

BLAST of CmoCh17G005960 vs. TAIR 10
Match: AT3G49950.1 (GRAS family transcription factor )

HSP 1 Score: 186.0 bits (471), Expect = 6.5e-47
Identity = 127/404 (31.44%), Postives = 208/404 (51.49%), Query Frame = 0


Query: 69  LLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKT 128
           LL  CA AI   D+   H  LW+LN +A P GDS Q++ S FL+AL  +A     T   T
Sbjct: 30  LLLHCATAIDSNDAALTHQILWVLNNIAPPDGDSTQRLTSAFLRALLSRAVSKTPTLSST 89

Query: 129 LVAI--ADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTL 188
           +  +  AD+ H F  S+  +  F + +PW  FG +A+N AIL A+EG + +HI+D+S T 
Sbjct: 90  ISFLPQADELHRF--SVVELAAFVDLTPWHRFGFIAANAAILTAVEGYSTVHIVDLSLTH 149

Query: 189 CTQWPTLLESLATR-NDDTPHLKLTVVTTT----TIVKSLMKEIGQRMEKFARLMGVPFE 248
           C Q PTL++++A+R N   P LKLTVV+++      +    +E+G ++  FA    +  E
Sbjct: 150 CMQIPTLIDAMASRLNKPPPLLKLTVVSSSDHFPPFINISYEELGSKLVNFATTRNITME 209

Query: 249 FN--PITNLENLTDLTKEALKV---EEDEAIAINCIGALRRVRIEE--------RNNVVS 308
           F   P T  +  + L ++ L++     +EA+ +NC   LR +  E         R   + 
Sbjct: 210 FTIVPSTYSDGFSSLLQQ-LRIYPSSFNEALVVNCHMMLRYIPEEPLTSSSSSLRTVFLK 269

Query: 309 MLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLER 368
            L+SL PR++T++EE+ D  S   N +   +    ++ + FD  +      S +R   E 
Sbjct: 270 QLRSLNPRIVTLIEEDVDLTS--ENLVNRLKSAFNYFWIPFDTTD---TFMSEQRRWYEA 329

Query: 369 ECSRSIVRLLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYK 428
           E S  I  ++  + +E     E+ E  ++W +R++E+ F      ED + DVKA+L+ + 
Sbjct: 330 EISWKIENVVAKEGAER---VERTETKRRWIERMREAEFGGVRVKEDAVADVKAMLEEHA 389

Query: 429 PGWALLRRAATTATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 453
            GW +             +++DD   + LTWK   VV+ + W P
Sbjct: 390 VGWGM-------------KKEDDDESLVLTWKGHSVVFATVWVP 409

[Close]

BLAST of CmoCh17G005960 vs. TAIR 10
Match: AT2G04890.1 (SCARECROW-like 21 )

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-39
Identity = 109/390 (27.95%), Postives = 198/390 (50.77%), Query Frame = 0


Query: 69  LLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKT 128
           +L  CA+A+SE +       +  L  + S  G+  Q++ +Y L+ L  +   +G + YK+
Sbjct: 53  VLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKS 112

Query: 129 LVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCT 188
           L +   +++ F   L  +    E  P+  FG++++NGAI EA++ E ++HIID      +
Sbjct: 113 LQSREPESYEF---LSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGS 172

Query: 189 QWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNL 248
           QW  L+++ A R    P++++T V   +++ ++ K    R+EK A+   VPF FN ++  
Sbjct: 173 QWIALIQAFAARPGGAPNIRITGVGDGSVLVTVKK----RLEKLAKKFDVPFRFNAVSRP 232

Query: 249 ENLTDLTKEALKVEEDEAIAINCIGALRRVRIE------ERNNVVSMLKSLKPRVLTIVE 308
               ++  E L V + EA+ +N    L  +  E       R+ ++ M+KSL P+V+T+VE
Sbjct: 233 S--CEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVE 292

Query: 309 EEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLEREC-SRSIVRLLGCD 368
           +E +  ++ + FL  F E L +YT  F+ ++        ER+ +E+ C +R +V ++ C+
Sbjct: 293 QECN--TNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACE 352

Query: 369 ESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATTA 428
            +E     E+ E   +W  R   + F     S  +   ++ALL+ Y  G+A         
Sbjct: 353 GAER---IERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYA--------- 412

Query: 429 TGKVHERDDDSCGVYLTWKEEPVVWVSAWK 452
              + ERD     +YL W +  +V   AWK
Sbjct: 413 ---IEERDG---ALYLGWMDRILVSSCAWK 413

[Close]

BLAST of CmoCh17G005960 vs. TAIR 10
Match: AT5G48150.1 (GRAS family transcription factor )

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-37
Identity = 111/408 (27.21%), Postives = 200/408 (49.02%), Query Frame = 0


Query: 65  WSSTL-----------LKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQA 124
           W STL           L  CA+A+SE D    H  +  L ++ S  G+  Q++ +Y L+ 
Sbjct: 107 WRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEG 166

Query: 125 LFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEG 184
           L  +   +G + YK L    +   +   S   IL   E  P+  FG++++NGAI EA++ 
Sbjct: 167 LVAQLASSGSSIYKALNRCPEPASTELLSYMHIL--YEVCPYFKFGYMSANGAIAEAMKE 226

Query: 185 ETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSL---MKEIGQRME 244
           E ++HIID      +QW TL+++ A R    P +++T +   T   +    +  +G R+ 
Sbjct: 227 ENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLA 286

Query: 245 KFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIE------ERN 304
           K A+   VPFEFN ++   +++++  + L V   EA+A+N    L  +  E       R+
Sbjct: 287 KLAKQFNVPFEFNSVS--VSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRD 346

Query: 305 NVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERL 364
            ++ M+KSL P+V+T+VE+E++  ++   F   F E + +Y   F+ ++ +      +R+
Sbjct: 347 RLLRMVKSLSPKVVTLVEQESN--TNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRI 406

Query: 365 VLEREC-SRSIVRLLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKAL 424
            +E+ C +R +V ++ C+ ++     E+ E   +W  R   + F+    S  V   +K+L
Sbjct: 407 NVEQHCLARDVVNIIACEGADR---VERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSL 466

Query: 425 LKRYKPGWALLRRAATTATGKVHERDDDSCGVYLTWKEEPVVWVSAWK 452
           L+ Y   +            ++ ERD     +YL W    +V   AWK
Sbjct: 467 LRNYSDKY------------RLEERDG---ALYLGWMHRDLVASCAWK 490

[Close]

BLAST of CmoCh17G005960 vs. TAIR 10
Match: AT5G48150.2 (GRAS family transcription factor )

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-37
Identity = 111/408 (27.21%), Postives = 200/408 (49.02%), Query Frame = 0


Query: 65  WSSTL-----------LKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQA 124
           W STL           L  CA+A+SE D    H  +  L ++ S  G+  Q++ +Y L+ 
Sbjct: 107 WRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEG 166

Query: 125 LFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEG 184
           L  +   +G + YK L    +   +   S   IL   E  P+  FG++++NGAI EA++ 
Sbjct: 167 LVAQLASSGSSIYKALNRCPEPASTELLSYMHIL--YEVCPYFKFGYMSANGAIAEAMKE 226

Query: 185 ETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSL---MKEIGQRME 244
           E ++HIID      +QW TL+++ A R    P +++T +   T   +    +  +G R+ 
Sbjct: 227 ENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLA 286

Query: 245 KFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIE------ERN 304
           K A+   VPFEFN ++   +++++  + L V   EA+A+N    L  +  E       R+
Sbjct: 287 KLAKQFNVPFEFNSVS--VSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRD 346

Query: 305 NVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERL 364
            ++ M+KSL P+V+T+VE+E++  ++   F   F E + +Y   F+ ++ +      +R+
Sbjct: 347 RLLRMVKSLSPKVVTLVEQESN--TNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRI 406

Query: 365 VLEREC-SRSIVRLLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKAL 424
            +E+ C +R +V ++ C+ ++     E+ E   +W  R   + F+    S  V   +K+L
Sbjct: 407 NVEQHCLARDVVNIIACEGADR---VERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSL 466

Query: 425 LKRYKPGWALLRRAATTATGKVHERDDDSCGVYLTWKEEPVVWVSAWK 452
           L+ Y   +            ++ ERD     +YL W    +V   AWK
Sbjct: 467 LRNYSDKY------------RLEERDG---ALYLGWMHRDLVASCAWK 490

The following BLAST results are available for this feature:

BLAST of CmoCh17G005960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZF7	6.9e-110	45.74	Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1	[more]
A2YN56	9.6e-104	47.29	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1	[more]
Q8H2X8	1.3e-103	47.29	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2	[more]
A2XIA8	2.1e-103	46.35	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1	[more]
Q75I13	2.8e-103	46.35	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1	[more]

BLAST of CmoCh17G005960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZH2	7.3e-256	100.00	protein SHORT-ROOT-like OS=Cucurbita moschata OX=3662 GN=LOC111440607 PE=3 SV=1	[more]
A0A6J1JX21	1.1e-251	98.46	protein SHORT-ROOT-like OS=Cucurbita maxima OX=3661 GN=LOC111488628 PE=3 SV=1	[more]
A0A0A0K966	1.6e-223	86.52	GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G081510 PE=3 S...	[more]
A0A1S3CCT8	1.5e-221	86.39	protein SHORT-ROOT-like OS=Cucumis melo OX=3656 GN=LOC103498966 PE=3 SV=1	[more]
A0A5A7T902	2.2e-204	87.06	Protein SHORT-ROOT-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh17G005960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933337.1	1.5e-255	100.00	protein SHORT-ROOT-like [Cucurbita moschata] >XP_022953296.1 protein SHORT-ROOT-...	[more]
KAG7013919.1	2.0e-252	98.46	Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022992254.1	2.3e-251	98.46	protein SHORT-ROOT-like [Cucurbita maxima]	[more]
XP_023548769.1	4.7e-249	96.73	protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo]	[more]
KAG6575379.1	3.1e-232	98.35	Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh17G005960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37650.1	4.9e-111	45.74	GRAS family transcription factor	[more]
AT3G49950.1	6.5e-47	31.44	GRAS family transcription factor	[more]
AT2G04890.1	2.2e-39	27.95	SCARECROW-like 21	[more]
AT5G48150.1	2.1e-37	27.21	GRAS family transcription factor	[more]
AT5G48150.2	2.1e-37	27.21	GRAS family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 68..451 e-value: 2.4E-94 score: 316.4
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 30..451
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 57..451 score: 67.58503
None	No IPR available	PANTHER	PTHR31636:SF194	PROTEIN SHORT-ROOT-LIKE	coord: 30..451

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G005960.1	CmoCh17G005960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding