CmoCh17G005450 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G005450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein WHAT'S THIS FACTOR 1 homolog
Location	Cmo_Chr17: 5539202 .. 5540587 (+)
RNA-Seq Expression	CmoCh17G005450
Synteny	CmoCh17G005450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGCACATTTCATTCTTCCGCACAGAGCTTACTTTTCTGTTAAATCTGAATTTTGGGGTAAGAATTTGGATTTTCGAAACAGAAATGATAGTTTGAGTGATAATTCAAGAAAATCTCATGTGTATTTTCAACCGATTAGAGCTGGTGTGAAATGGAGGAAGGAGCTTCCGTTTGATAATGTAATACAGAGGGATAAGAAGCTGAAATTGGTTACTCGGATTAGGAAGATTCTAGTTCAACATCATGATAATGTTATGTCACTTAGGGGTTTGGGTAAATTCAGGAGAGATTTAGGTGTACAGGAAAAGACGAGGCTCATTGAGTTGTTGAAGATGTTCCCTGCAGTATTTGAGATTGTAGAAGAACGGGCGTTTTCTTTGAAATTCAAATTGACGGAAGAGGCTGAAAGGTTGTACTTCGAGGAGCTGAAGATCAGAAATGAAATGGAAGGTTTGTTGGTTACTAAGCTGAGGAAGTTACTGATGATGTCTGCTGATAAGCGAATATTGTTGGAGAAAATTGCACATTTGAGGACTGATTTTGGTCTTCCTTCCGAGTTTCGTGACACGATTTGCCATCGTTATCCTCAGTACTTTAGAGTTGTGGCAACCGAGAGCGGTCCAGCTCTCGAATTGACACACTGGGATCCTGAACTTGCTGTTTCTGTAGCAGAGTTAGCCGAGGAGGAGAACCGAGCTAGAGAATTAGAAGAGAAGAATTTGATTATTGACCGACCGTTGAAGTTTAATCGAGTGAAGCTACCTAAGGGGCTTAAGCTTTCGAAGAATGATATGAGGAAAATGAATGAGTTTAGGGACATTCCTTATATCTCTCCGTATTCTGATTTCTCAGGGTTTAAGGCAGGTACACCCCAGAAAGAGAAACATGCTTGTGGGGTTGTTCATGAGATTTTAAGCCTTACACTTGAGAAGAGAACCCTTGTTGATCATTTCACTCATTTCCGGGAGGAGTTTAGATTCTCCCAGCAGTTGAGGGGGATGCTAATAAGGCATCCCAATATGTTTTATGTCTCGTTGAAAGGGGATAAAAACTCGGTTTTCCTCAGAGAAGCATATCGCGATTCTCAGTTGATCGACAAAGATCGGTTGTTAATCGTAAAGGAGAAGTTTCGAGGTCTTGTGGCTGTTCCTCAATTCAAAGGCAGAGGAGCTCCCGAAAGTGACACGGATTGGCGAGAAACCAATCATGGAGATGATATGAGAGGTGAAGAATGGTCTGATGTCGACGATGACGATGATGAATTCGACAACGATGGTGAGGATGACTGGATTGATGAACAGATCAATAACTTGGAAATGGCTGATCAGAGGCTTCTTTCTCCTCCGGCATTACCTTATGGACTGCCCCAAGAAAGATGGTGA

mRNA sequence

ATGTTCGCACATTTCATTCTTCCGCACAGAGCTTACTTTTCTGTTAAATCTGAATTTTGGGGTAAGAATTTGGATTTTCGAAACAGAAATGATAGTTTGAGTGATAATTCAAGAAAATCTCATGTGTATTTTCAACCGATTAGAGCTGGTGTGAAATGGAGGAAGGAGCTTCCGTTTGATAATGTAATACAGAGGGATAAGAAGCTGAAATTGGTTACTCGGATTAGGAAGATTCTAGTTCAACATCATGATAATGTTATGTCACTTAGGGGTTTGGGTAAATTCAGGAGAGATTTAGGTGTACAGGAAAAGACGAGGCTCATTGAGTTGTTGAAGATGTTCCCTGCAGTATTTGAGATTGTAGAAGAACGGGCGTTTTCTTTGAAATTCAAATTGACGGAAGAGGCTGAAAGGTTGTACTTCGAGGAGCTGAAGATCAGAAATGAAATGGAAGGTTTGTTGGTTACTAAGCTGAGGAAGTTACTGATGATGTCTGCTGATAAGCGAATATTGTTGGAGAAAATTGCACATTTGAGGACTGATTTTGGTCTTCCTTCCGAGTTTCGTGACACGATTTGCCATCGTTATCCTCAGTACTTTAGAGTTGTGGCAACCGAGAGCGGTCCAGCTCTCGAATTGACACACTGGGATCCTGAACTTGCTGTTTCTGTAGCAGAGTTAGCCGAGGAGGAGAACCGAGCTAGAGAATTAGAAGAGAAGAATTTGATTATTGACCGACCGTTGAAGTTTAATCGAGTGAAGCTACCTAAGGGGCTTAAGCTTTCGAAGAATGATATGAGGAAAATGAATGAGTTTAGGGACATTCCTTATATCTCTCCGTATTCTGATTTCTCAGGGTTTAAGGCAGGTACACCCCAGAAAGAGAAACATGCTTGTGGGGTTGTTCATGAGATTTTAAGCCTTACACTTGAGAAGAGAACCCTTGTTGATCATTTCACTCATTTCCGGGAGGAGTTTAGATTCTCCCAGCAGTTGAGGGGGATGCTAATAAGGCATCCCAATATGTTTTATGTCTCGTTGAAAGGGGATAAAAACTCGGTTTTCCTCAGAGAAGCATATCGCGATTCTCAGTTGATCGACAAAGATCGGTTGTTAATCGTAAAGGAGAAGTTTCGAGGTCTTGTGGCTGTTCCTCAATTCAAAGGCAGAGGAGCTCCCGAAAGTGACACGGATTGGCGAGAAACCAATCATGGAGATGATATGAGAGGTGAAGAATGGTCTGATGTCGACGATGACGATGATGAATTCGACAACGATGGTGAGGATGACTGGATTGATGAACAGATCAATAACTTGGAAATGGCTGATCAGAGGCTTCTTTCTCCTCCGGCATTACCTTATGGACTGCCCCAAGAAAGATGGTGA

Coding sequence (CDS)

ATGTTCGCACATTTCATTCTTCCGCACAGAGCTTACTTTTCTGTTAAATCTGAATTTTGGGGTAAGAATTTGGATTTTCGAAACAGAAATGATAGTTTGAGTGATAATTCAAGAAAATCTCATGTGTATTTTCAACCGATTAGAGCTGGTGTGAAATGGAGGAAGGAGCTTCCGTTTGATAATGTAATACAGAGGGATAAGAAGCTGAAATTGGTTACTCGGATTAGGAAGATTCTAGTTCAACATCATGATAATGTTATGTCACTTAGGGGTTTGGGTAAATTCAGGAGAGATTTAGGTGTACAGGAAAAGACGAGGCTCATTGAGTTGTTGAAGATGTTCCCTGCAGTATTTGAGATTGTAGAAGAACGGGCGTTTTCTTTGAAATTCAAATTGACGGAAGAGGCTGAAAGGTTGTACTTCGAGGAGCTGAAGATCAGAAATGAAATGGAAGGTTTGTTGGTTACTAAGCTGAGGAAGTTACTGATGATGTCTGCTGATAAGCGAATATTGTTGGAGAAAATTGCACATTTGAGGACTGATTTTGGTCTTCCTTCCGAGTTTCGTGACACGATTTGCCATCGTTATCCTCAGTACTTTAGAGTTGTGGCAACCGAGAGCGGTCCAGCTCTCGAATTGACACACTGGGATCCTGAACTTGCTGTTTCTGTAGCAGAGTTAGCCGAGGAGGAGAACCGAGCTAGAGAATTAGAAGAGAAGAATTTGATTATTGACCGACCGTTGAAGTTTAATCGAGTGAAGCTACCTAAGGGGCTTAAGCTTTCGAAGAATGATATGAGGAAAATGAATGAGTTTAGGGACATTCCTTATATCTCTCCGTATTCTGATTTCTCAGGGTTTAAGGCAGGTACACCCCAGAAAGAGAAACATGCTTGTGGGGTTGTTCATGAGATTTTAAGCCTTACACTTGAGAAGAGAACCCTTGTTGATCATTTCACTCATTTCCGGGAGGAGTTTAGATTCTCCCAGCAGTTGAGGGGGATGCTAATAAGGCATCCCAATATGTTTTATGTCTCGTTGAAAGGGGATAAAAACTCGGTTTTCCTCAGAGAAGCATATCGCGATTCTCAGTTGATCGACAAAGATCGGTTGTTAATCGTAAAGGAGAAGTTTCGAGGTCTTGTGGCTGTTCCTCAATTCAAAGGCAGAGGAGCTCCCGAAAGTGACACGGATTGGCGAGAAACCAATCATGGAGATGATATGAGAGGTGAAGAATGGTCTGATGTCGACGATGACGATGATGAATTCGACAACGATGGTGAGGATGACTGGATTGATGAACAGATCAATAACTTGGAAATGGCTGATCAGAGGCTTCTTTCTCCTCCGGCATTACCTTATGGACTGCCCCAAGAAAGATGGTGA

Protein sequence

MFAHFILPHRAYFSVKSEFWGKNLDFRNRNDSLSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEERAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAELAEEENRARELEEKNLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGFKAGTPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDVDDDDDEFDNDGEDDWIDEQINNLEMADQRLLSPPALPYGLPQERW

Homology

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BLAST of CmoCh17G005450 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 7.9e-154
Identity = 297/497 (59.76%), Postives = 361/497 (72.64%), Query Frame = 0


Query: 7   LPHRAYFSVKSEFWGKNLDFRNRNDSLSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRD 66
           LP     + +S+F G+ L   N+    S  SRK+ V  +P+RA VK RKEL FD+V+QRD
Sbjct: 33  LPMSTIRAARSQFMGEGLILGNKYGFWS-TSRKTRVVVEPVRAAVKRRKELTFDSVVQRD 92

Query: 67  KKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEERAF 126
           KKLKLV  IRKILV   D +MSLRGLGK+RRDLG++++ R I LL+ +P VFEIVEE A+
Sbjct: 93  KKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRFIALLRKYPGVFEIVEEGAY 152

Query: 127 SLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPS 186
           SL+FK+T EAERLY +E++IRNE+E +LV KLRKL+MMS DKRILLEKI+HL+TD GLP 
Sbjct: 153 SLRFKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPL 212

Query: 187 EFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAELAEEENRARELEEKNLIIDR 246
           EFRDTIC RYPQYFRVV T  GPALELTHWDPELAVS AEL+E++NR RE EE+NLIIDR
Sbjct: 213 EFRDTICQRYPQYFRVVPTPRGPALELTHWDPELAVSAAELSEDDNRTRESEERNLIIDR 272

Query: 247 PLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGFKAGTPQKEKHACGVVHEIL 306
           P KFNRVKLP+GL LSK++ RK+++FRD+ YISPY DFS  ++GT +KEKHACGV+HE+L
Sbjct: 273 PPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELL 332

Query: 307 SLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLI 366
           SLT EKRTLVDH THFREEFRFSQQLRGMLIRHP++FYVSLKG+++SVFLREAYR+S+LI
Sbjct: 333 SLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELI 392

Query: 367 DKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETN-HGDDMRG---------EEWSDV 426
           DKD L +VKEK R LV+VP+F  RG P  D + RE    G D  G         EEWSDV
Sbjct: 393 DKDPLTLVKEKMRALVSVPRFPRRGGPRKDEEGREVEIDGSDADGEEEEEESDAEEWSDV 452

Query: 427 D---------DDDD--------------EFDNDGEDDWIDEQINNLEMADQRLLSP---- 462
           D         +DDD               FD+D ED+  D     L  + ++  SP    
Sbjct: 453 DGYLEGEDGGNDDDGDWTDDEGEEDVPPNFDDDDEDEEEDSVKIGLSPSSRKSSSPRKKE 512

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BLAST of CmoCh17G005450 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 2.7e-146
Identity = 268/382 (70.16%), Postives = 318/382 (83.25%), Query Frame = 0


Query: 48  RAGVKWRKELPFDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRL 107
           +A VK RKE+PFDNVIQRDKKLKLV ++R ILV + D VMSLR LG+FRRDLG+  K RL
Sbjct: 58  QAAVKRRKEIPFDNVIQRDKKLKLVLKLRNILVSNPDRVMSLRDLGRFRRDLGLTRKRRL 117

Query: 108 IELLKMFPAVFEIVEERAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSAD 167
           I LLK FP VFE+VEE  +SL+F+LT  AERLY +EL ++NE EGL VTKLRKLLMMS D
Sbjct: 118 IALLKRFPGVFEVVEEGVYSLRFRLTPAAERLYLDELHLKNESEGLAVTKLRKLLMMSQD 177

Query: 168 KRILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAEL 227
           KRIL+EKIAHL+ D GLP EFRDTIC RYPQYFRVV  + GP LELTHWDPELAVS AE+
Sbjct: 178 KRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQMDRGPGLELTHWDPELAVSAAEV 237

Query: 228 AEEENRARELEEKNLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGF 287
           AEEENRARE +E+NLIIDRPLKFNRVKLP+GLKLS+ + R++ +F+++PYISPYSDFS  
Sbjct: 238 AEEENRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKEMPYISPYSDFSHL 297

Query: 288 KAGTPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSL 347
           ++G+ +KEKHACGVVHEILSLTLEKRTLVDH THFREEFRFSQ LRGMLIRHP+MFYVSL
Sbjct: 298 RSGSAEKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSL 357

Query: 348 KGDKNSVFLREAYRDSQLIDKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDD 407
           KGD++SVFLREAY++SQL++K +L+++KEK R LVAVP+F  RG P +  +   TN    
Sbjct: 358 KGDRDSVFLREAYKNSQLVEKSKLVLLKEKMRALVAVPRFPRRGVPATSEEADRTNGAAQ 417

Query: 408 MRGEEWSDVDDDDDEFDNDGED 430
           M   E SDV+DD+DE  +D ED
Sbjct: 418 ML-SEGSDVEDDEDEGLSDMED 438

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BLAST of CmoCh17G005450 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 7.2e-139
Identity = 254/382 (66.49%), Postives = 310/382 (81.15%), Query Frame = 0


Query: 48  RAGVKWRKELPFDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRL 107
           +A VK RKE PFD VIQRDKKLKLV ++R ILV   D VMSLR LG+FRRDLG+  K RL
Sbjct: 52  QAAVKRRKEAPFDTVIQRDKKLKLVLKLRNILVAQPDRVMSLRELGRFRRDLGLTRKRRL 111

Query: 108 IELLKMFPAVFEIVEERAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSAD 167
           I LL+ FP VF++VEE  +SL+F+LT  AERLY +EL++RNE EGL V KLRKLLMMS +
Sbjct: 112 IALLRRFPGVFDVVEEGVYSLRFRLTPAAERLYLDELRLRNESEGLAVAKLRKLLMMSQE 171

Query: 168 KRILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAEL 227
           KRIL+EK+AHL+ D GLP EFRDT+C RYPQYFRVV  + GPALELTHWDPELAVS AEL
Sbjct: 172 KRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVVRMDRGPALELTHWDPELAVSAAEL 231

Query: 228 AEEENRARELEEKNLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGF 287
           AEEE+RARE EE+NLIIDRPLKFNRV+LPKGLKL++ + R++  F+++PYISPY+DFS  
Sbjct: 232 AEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKEMPYISPYADFSHL 291

Query: 288 KAGTPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSL 347
           ++G+ +KEKHACGVVHEILSLT+EKRTLVDH THFREEFRFSQ LRGM+IRHP+MFYVS 
Sbjct: 292 RSGSDEKEKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGMIIRHPDMFYVSF 351

Query: 348 KGDKNSVFLREAYRDSQLIDKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDD 407
           KGD++SVFLREAY+DSQL++K++L+++KEK R LVAVP+F  R A  +  +    N    
Sbjct: 352 KGDRDSVFLREAYKDSQLVEKNQLVLLKEKMRALVAVPRFPRRAAVGTGEEAEGMNGSLQ 411

Query: 408 MRGEEWSDVDDDDDEFDNDGED 430
            R +   +  DD+DE  +D ED
Sbjct: 412 SRDQVSDEEYDDEDEGLSDMED 433

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BLAST of CmoCh17G005450 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-35
Identity = 106/351 (30.20%), Postives = 188/351 (53.56%), Query Frame = 0


Query: 59  FDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLI-ELLKMFPAV 118
           +DN ++ +KK++ V +   +++   ++ +++  L    R LG+  K       L  FP V
Sbjct: 52  YDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLLKFPHV 111

Query: 119 FEIVEERAFSLKF-KLTEEAERLYFEELKIRNEMEGLL------VTKLRKLLMMSADKRI 178
           FEI E     + + +LT +A        +IR+E E +L      VT+LRKL+MMS   RI
Sbjct: 112 FEIYEHPVQRILYCRLTRKALD------QIRHEHEAVLDQIPDAVTRLRKLVMMSNTGRI 171

Query: 179 LLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATES--GPALELTHWDPELAVSVAELA 238
            LE +   RT+FGLP +F  ++  ++PQ+FR++  E      +E+   DP L++   E  
Sbjct: 172 RLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAIE-- 231

Query: 239 EEENRARELEEKNLIID-RPLKFN-RVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSG 298
               R RE+E +   ID   ++F+  V  P G K+ K     + +++ +PY SPY D SG
Sbjct: 232 ----RVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISG 291

Query: 299 FKAGTPQK----EKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNM 358
           +   + +     EK +   +HE+LSLT+EK+  ++   HFR      ++L+  L++H  +
Sbjct: 292 YDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGI 351

Query: 359 FYVSLKGD---KNSVFLREAYRDSQLIDKDRLLIVKEKFRGLVAVPQFKGR 391
           FY+S +G+    ++VFLRE Y+  +L++ + + + + +   LV +   K +
Sbjct: 352 FYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAK 390

[Close]

BLAST of CmoCh17G005450 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-25
Identity = 94/335 (28.06%), Postives = 157/335 (46.87%), Query Frame = 0


Query: 51  VKWRKELPFDNV--IQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLI 110
           +KW+++  FDN+  I R  +LK V  ++  +VQ  +  + +  + K  R   V   T++ 
Sbjct: 29  MKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDV--STKIA 88

Query: 111 ELLKMFPAVFEIVEERAFSLK-FKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSAD 170
             L+ FP++FE      ++L  F+LT EA  L  +E  +       L  +L+KL++MS D
Sbjct: 89  HFLRKFPSIFEEFVGPEYNLPWFRLTPEATELDRQERVVYQTSADDLRDRLKKLILMSKD 148

Query: 171 KRILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATESGP---ALELTHWDPELAVSV 230
             + L  +  ++   GLP ++           FR V  E G    A++    D  L+V  
Sbjct: 149 NVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMEDGVKGLAVDYNGGDKVLSVLQ 208

Query: 231 AELAEEENRARELEEKNLIIDRPLKFNRVKLP-KGLKLSKNDMRKMNEFRDIPYISPYSD 290
               ++      LEE    I+ PL       P KG +L       + EF+ +PY+SPY D
Sbjct: 209 KNAMKKRRGEVSLEE----IEFPL------FPSKGCRLRVKIEDWLMEFQKLPYVSPYDD 268

Query: 291 FSGFKAGTPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMF 350
           +S     +   EK   G +HE+L L +E           ++ F   Q++     RHP +F
Sbjct: 269 YSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERHPQIF 328

Query: 351 YVSLKGDKNSVFLREAYRDSQLIDKDRLLIVKEKF 379
           Y+S+K    +  LRE YRD   ++   +L V++K+
Sbjct: 329 YLSMKNKTCTAILREPYRDKASVETHPVLGVRKKY 351

[Close]

BLAST of CmoCh17G005450 vs. ExPASy TrEMBL
Match: A0A6J1EPZ9 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111436333 PE=4 SV=1)

HSP 1 Score: 916.8 bits (2368), Expect = 3.7e-263
Identity = 461/461 (100.00%), Postives = 461/461 (100.00%), Query Frame = 0


Query: 1   MFAHFILPHRAYFSVKSEFWGKNLDFRNRNDSLSDNSRKSHVYFQPIRAGVKWRKELPFD 60
           MFAHFILPHRAYFSVKSEFWGKNLDFRNRNDSLSDNSRKSHVYFQPIRAGVKWRKELPFD
Sbjct: 1   MFAHFILPHRAYFSVKSEFWGKNLDFRNRNDSLSDNSRKSHVYFQPIRAGVKWRKELPFD 60

Query: 61  NVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEI 120
           NVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEI
Sbjct: 61  NVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEI 120

Query: 121 VEERAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRT 180
           VEERAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRT
Sbjct: 121 VEERAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRT 180

Query: 181 DFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAELAEEENRARELEEK 240
           DFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAELAEEENRARELEEK
Sbjct: 181 DFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAELAEEENRARELEEK 240

Query: 241 NLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGFKAGTPQKEKHACG 300
           NLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGFKAGTPQKEKHACG
Sbjct: 241 NLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGFKAGTPQKEKHACG 300

Query: 301 VVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAY 360
           VVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAY
Sbjct: 301 VVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAY 360

Query: 361 RDSQLIDKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDVDDDD 420
           RDSQLIDKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDVDDDD
Sbjct: 361 RDSQLIDKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDVDDDD 420

Query: 421 DEFDNDGEDDWIDEQINNLEMADQRLLSPPALPYGLPQERW 462
           DEFDNDGEDDWIDEQINNLEMADQRLLSPPALPYGLPQERW
Sbjct: 421 DEFDNDGEDDWIDEQINNLEMADQRLLSPPALPYGLPQERW 461

[Close]

BLAST of CmoCh17G005450 vs. ExPASy TrEMBL
Match: A0A6J1JV64 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111488626 PE=4 SV=1)

HSP 1 Score: 888.3 bits (2294), Expect = 1.4e-254
Identity = 446/461 (96.75%), Postives = 452/461 (98.05%), Query Frame = 0


Query: 1   MFAHFILPHRAYFSVKSEFWGKNLDFRNRNDSLSDNSRKSHVYFQPIRAGVKWRKELPFD 60
           MFAHFILPHR YFSVKSEFWGKNLDFRNRNDSLSDNSRK HVYFQPIRAGVKWRKELPFD
Sbjct: 1   MFAHFILPHRPYFSVKSEFWGKNLDFRNRNDSLSDNSRKYHVYFQPIRAGVKWRKELPFD 60

Query: 61  NVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEI 120
           NVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEI
Sbjct: 61  NVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEI 120

Query: 121 VEERAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRT 180
           VEE AFSLKFKLTEEAERLYFEE+KIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRT
Sbjct: 121 VEEEAFSLKFKLTEEAERLYFEEMKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRT 180

Query: 181 DFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAELAEEENRARELEEK 240
           DFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVS AELA+EEN+ARELEEK
Sbjct: 181 DFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSAAELADEENQARELEEK 240

Query: 241 NLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGFKAGTPQKEKHACG 300
           NLIIDRPLKFNRVKLPKGLKLSKN+MRKMNEFRDIPYISPYSDFSG  AGTPQKEKHACG
Sbjct: 241 NLIIDRPLKFNRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGITAGTPQKEKHACG 300

Query: 301 VVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAY 360
           VVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAY
Sbjct: 301 VVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAY 360

Query: 361 RDSQLIDKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDVDDDD 420
           RDSQLIDKDRLLIVKEKFRGLVAVPQ KGRGAP+SDTDWRETNHGDDMRGEEWSDVDDDD
Sbjct: 361 RDSQLIDKDRLLIVKEKFRGLVAVPQLKGRGAPKSDTDWRETNHGDDMRGEEWSDVDDDD 420

Query: 421 DEFDNDGEDDWIDEQINNLEMADQRLLSPPALPYGLPQERW 462
           DEFDNDGEDDWIDEQINNL+MADQRLLSPPALP G PQERW
Sbjct: 421 DEFDNDGEDDWIDEQINNLDMADQRLLSPPALPDGRPQERW 461

[Close]

BLAST of CmoCh17G005450 vs. ExPASy TrEMBL
Match: A0A1S3CG79 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103500096 PE=4 SV=1)

HSP 1 Score: 699.5 bits (1804), Expect = 9.3e-198
Identity = 376/494 (76.11%), Postives = 405/494 (81.98%), Query Frame = 0


Query: 5   FILPHRAYFSVKSEFWGKNLDFRNRNDSLSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQ 64
           FIL H++Y+SVKS+FWGKNLD RNRND+L    RK+H  FQPIRA VK RKELPFDNVIQ
Sbjct: 20  FILGHKSYYSVKSQFWGKNLDLRNRNDNL----RKAHDPFQPIRAVVKRRKELPFDNVIQ 79

Query: 65  RDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEER 124
           RDKKLKLV RIRKILVQ  D VMSL+ LGKFRRDLG+++K RLI LLK FPAVFE+VEE 
Sbjct: 80  RDKKLKLVMRIRKILVQQPDRVMSLKELGKFRRDLGLEKKRRLIALLKKFPAVFEVVEEG 139

Query: 125 AFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGL 184
           AFSLKFKLT EAERLY EELKIRNEMEGLLV KLRKLLMMSADKRILLEKIAHLRTDFGL
Sbjct: 140 AFSLKFKLTAEAERLYLEELKIRNEMEGLLVIKLRKLLMMSADKRILLEKIAHLRTDFGL 199

Query: 185 PSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAELAEEENRARELEEKNLII 244
           P EFRDTICHRYPQYFRVVATE GPALELTHWDPELAVS AELAEEENRARELEEKNLII
Sbjct: 200 PLEFRDTICHRYPQYFRVVATERGPALELTHWDPELAVSAAELAEEENRARELEEKNLII 259

Query: 245 DRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGFKAGTPQKEKHACGVVHE 304
           DRPLKFNRVKLPKGL LSK++MRK+++FRDIPYISPYSDFSG KAGTPQKEKHACGVVHE
Sbjct: 260 DRPLKFNRVKLPKGLNLSKSEMRKISQFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHE 319

Query: 305 ILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQ 364
           IL+LTLEKRTLVDH THFREEFRFSQQLRGMLIRHP+MFYVSLKGD++SVFLREAYRDSQ
Sbjct: 320 ILNLTLEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQ 379

Query: 365 LIDKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDV----DDDD 424
           LIDKDRLLI+KEK R LVAVP+F+ RGA   DT   +TN   DM GEEWSDV    DDDD
Sbjct: 380 LIDKDRLLIIKEKLRALVAVPRFRSRGASNGDTKGGDTNQPSDMSGEEWSDVDNLLDDDD 439

Query: 425 DEFDNDG---------EDDWIDE------------------------QINNLEMADQRLL 462
           DEFD+D          EDDW DE                        Q+N+L+   Q  L
Sbjct: 440 DEFDDDEFDDDNNEAFEDDWSDEDDTPPSFNGDQDGESINIGSRKQKQVNDLQKVGQSRL 499

[Close]

BLAST of CmoCh17G005450 vs. ExPASy TrEMBL
Match: A0A5D3BY23 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00850 PE=4 SV=1)

HSP 1 Score: 697.2 bits (1798), Expect = 4.6e-197
Identity = 375/497 (75.45%), Postives = 405/497 (81.49%), Query Frame = 0


Query: 5   FILPHRAYFSVKSEFWGKNLDFRNRNDSLSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQ 64
           FIL H++Y+SVKS+FWGKNLD RNRND+L    RK+H  FQPIRA VK RKELPFDNVIQ
Sbjct: 20  FILGHKSYYSVKSQFWGKNLDLRNRNDNL----RKAHDPFQPIRAVVKRRKELPFDNVIQ 79

Query: 65  RDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEER 124
           RDKKLKLV RIRKILVQ  D VMSL+ LGKFRRDLG+++K RLI LLK FPAVFE+VEE 
Sbjct: 80  RDKKLKLVMRIRKILVQQPDRVMSLKELGKFRRDLGLEKKRRLIALLKKFPAVFEVVEEG 139

Query: 125 AFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGL 184
           AFSLKFKLT EAERLY EELKIRNEMEGLLV KLRKLLMMSADKRILLEKIAHLRTDFGL
Sbjct: 140 AFSLKFKLTAEAERLYLEELKIRNEMEGLLVIKLRKLLMMSADKRILLEKIAHLRTDFGL 199

Query: 185 PSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAELAEEENRARELEEKNLII 244
           P EFRDTICHRYPQYFRVVATE GPALELTHWDPELAVS AELAEEENRARELEEKNLII
Sbjct: 200 PLEFRDTICHRYPQYFRVVATERGPALELTHWDPELAVSAAELAEEENRARELEEKNLII 259

Query: 245 DRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGFKAGTPQKEKHACGVVHE 304
           DRPLKFNRVKLPKGL LSK++MRK+++FRDIPYISPYSDFSG KAGTPQKEKHACGVVHE
Sbjct: 260 DRPLKFNRVKLPKGLNLSKSEMRKISQFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHE 319

Query: 305 ILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQ 364
           IL+LTLEKRTLVDH THFREEFRFSQQLRGMLIRHP+MFYVSLKGD++SVFLREAYRDSQ
Sbjct: 320 ILNLTLEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQ 379

Query: 365 LIDKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDVDD------ 424
           LIDKDRLLI+KEK R LVAVP+F+ RGA   DT   +TN   DM GEEWSDVD+      
Sbjct: 380 LIDKDRLLIIKEKLRALVAVPRFRSRGASNGDTKGGDTNQPSDMSGEEWSDVDNLLDDDE 439

Query: 425 ------DDDEFDNDG----EDDWIDE------------------------QINNLEMADQ 462
                 DDDEFD+D     EDDW DE                        Q+N+L+   Q
Sbjct: 440 FDDDEFDDDEFDDDNNEAFEDDWSDEDDTPPSFNGDQDGESINIGSRKQKQVNDLQKVGQ 499

[Close]

BLAST of CmoCh17G005450 vs. ExPASy TrEMBL
Match: A0A6J1DTV5 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Momordica charantia OX=3673 GN=LOC111023444 PE=4 SV=1)

HSP 1 Score: 676.8 bits (1745), Expect = 6.4e-191
Identity = 367/495 (74.14%), Postives = 399/495 (80.61%), Query Frame = 0


Query: 5   FILPHRAY------FSVKS-EFWGKNLDFRNRNDSLSDNSRKSHVYFQPIRAGVKWRKEL 64
           FILP + Y      FS+KS EFWG+NLD R+R DS S N RK HV  QPIRA VK RKEL
Sbjct: 20  FILPRKPYFSENPSFSLKSEEFWGRNLDLRHRIDSSSSNLRKFHVPLQPIRAVVKRRKEL 79

Query: 65  PFDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAV 124
            FDNVIQRDKKLKLV RIRKILVQ  D +MSL+ LGKFRRDLG+++K RLI LLK FPAV
Sbjct: 80  KFDNVIQRDKKLKLVMRIRKILVQRPDRIMSLKELGKFRRDLGLEKKRRLIALLKKFPAV 139

Query: 125 FEIVEERAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAH 184
           FE+VEE AFSLKFKLT EAERLY EELKIRNEMEGLLV KLRKLLMMS DKRILLEKIAH
Sbjct: 140 FEVVEEGAFSLKFKLTPEAERLYLEELKIRNEMEGLLVVKLRKLLMMSIDKRILLEKIAH 199

Query: 185 LRTDFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAELAEEENRAREL 244
           LRTDFGLP EFRDTICHRYP YFRVVAT  GPALELTHWDPELAVS AELAEEENRAREL
Sbjct: 200 LRTDFGLPLEFRDTICHRYPHYFRVVATGRGPALELTHWDPELAVSAAELAEEENRAREL 259

Query: 245 EEKNLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGFKAGTPQKEKH 304
           EEKNLIIDRPLKFNRVKLPKGL LSK +MRK+++FRDIPY+SPYSDFS  KAGTPQKEKH
Sbjct: 260 EEKNLIIDRPLKFNRVKLPKGLNLSKGEMRKISQFRDIPYVSPYSDFSELKAGTPQKEKH 319

Query: 305 ACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLR 364
           ACGVVHEILSLTLEKRTLVDH THFREEFRFSQQLRGMLIRHP+MFY+SLKGD++SVFLR
Sbjct: 320 ACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDMFYISLKGDRDSVFLR 379

Query: 365 EAYRDSQLIDKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDV- 424
           EAYRDSQLIDKDRLLI+KEK R LVAVP+F+GRGA +SDTD  ETN  DD+ GE+WSDV 
Sbjct: 380 EAYRDSQLIDKDRLLIIKEKLRALVAVPRFRGRGATKSDTDGEETNQPDDLSGEDWSDVD 439

Query: 425 ----DDDDDEFDNDG--EDDWIDE------------------------QINNLEMADQRL 462
               DDDDDE D D   +D W DE                        +++NL+   Q L
Sbjct: 440 NLLGDDDDDEDDGDDTYDDGWSDEDDTPPSFDGDGDGEAINIVSSKQKRVDNLQKVGQSL 499

[Close]

BLAST of CmoCh17G005450 vs. TAIR 10
Match: AT4G01037.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 545.0 bits (1403), Expect = 5.6e-155
Identity = 297/497 (59.76%), Postives = 361/497 (72.64%), Query Frame = 0


Query: 7   LPHRAYFSVKSEFWGKNLDFRNRNDSLSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRD 66
           LP     + +S+F G+ L   N+    S  SRK+ V  +P+RA VK RKEL FD+V+QRD
Sbjct: 33  LPMSTIRAARSQFMGEGLILGNKYGFWS-TSRKTRVVVEPVRAAVKRRKELTFDSVVQRD 92

Query: 67  KKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEERAF 126
           KKLKLV  IRKILV   D +MSLRGLGK+RRDLG++++ R I LL+ +P VFEIVEE A+
Sbjct: 93  KKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRFIALLRKYPGVFEIVEEGAY 152

Query: 127 SLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPS 186
           SL+FK+T EAERLY +E++IRNE+E +LV KLRKL+MMS DKRILLEKI+HL+TD GLP 
Sbjct: 153 SLRFKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPL 212

Query: 187 EFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAELAEEENRARELEEKNLIIDR 246
           EFRDTIC RYPQYFRVV T  GPALELTHWDPELAVS AEL+E++NR RE EE+NLIIDR
Sbjct: 213 EFRDTICQRYPQYFRVVPTPRGPALELTHWDPELAVSAAELSEDDNRTRESEERNLIIDR 272

Query: 247 PLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGFKAGTPQKEKHACGVVHEIL 306
           P KFNRVKLP+GL LSK++ RK+++FRD+ YISPY DFS  ++GT +KEKHACGV+HE+L
Sbjct: 273 PPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELL 332

Query: 307 SLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLI 366
           SLT EKRTLVDH THFREEFRFSQQLRGMLIRHP++FYVSLKG+++SVFLREAYR+S+LI
Sbjct: 333 SLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELI 392

Query: 367 DKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETN-HGDDMRG---------EEWSDV 426
           DKD L +VKEK R LV+VP+F  RG P  D + RE    G D  G         EEWSDV
Sbjct: 393 DKDPLTLVKEKMRALVSVPRFPRRGGPRKDEEGREVEIDGSDADGEEEEEESDAEEWSDV 452

Query: 427 D---------DDDD--------------EFDNDGEDDWIDEQINNLEMADQRLLSP---- 462
           D         +DDD               FD+D ED+  D     L  + ++  SP    
Sbjct: 453 DGYLEGEDGGNDDDGDWTDDEGEEDVPPNFDDDDEDEEEDSVKIGLSPSSRKSSSPRKKE 512

[Close]

BLAST of CmoCh17G005450 vs. TAIR 10
Match: AT5G62990.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 223.8 bits (569), Expect = 2.9e-58
Identity = 142/417 (34.05%), Postives = 232/417 (55.64%), Query Frame = 0


Query: 60  DNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFE 119
           D  + +  +++ V ++  +L+    + + +  L K R  L ++    ++ +++ +P +FE
Sbjct: 66  DRHVVKQNRVRFVQKLNTLLLSKPKHYIPIEILYKCRSYLCIENPLAILSMIRRYPTIFE 125

Query: 120 I-----------VEERAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADK 179
           +             +    L  +LT  A  L  +EL +++E+   L TKL+KLLM+S+ +
Sbjct: 126 LFTTPTPHLPMNATKPLSQLCVRLTSAASSLAMQELNLKSEISDKLATKLQKLLMLSSHR 185

Query: 180 RILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAELA 239
           R+LL K+ H+  DFG P  FR  +C+ YP  F+ V T  G ALEL   DPELA       
Sbjct: 186 RLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTVDTSYGRALELVSSDPELA------- 245

Query: 240 EEENRARELE-EKNLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGF 299
              N+    E ++ LI+DRPLKF R+ L +GL L +     + +FR+ P + PY   S +
Sbjct: 246 ---NQMPSPEVDRGLIVDRPLKFKRLNLRRGLNLKRRHQGFLIKFRESPDVCPYKMSSDY 305

Query: 300 KAG-TPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVS 359
            A  + + EK AC VV E+L LT+EKRTL+DH THFR+EF    +LR +++RHP +FYVS
Sbjct: 306 LASESIEAEKRACAVVREVLGLTVEKRTLIDHLTHFRKEFSLPNKLRDLIVRHPELFYVS 365

Query: 360 LKGDKNSVFLREAYRDS-QLIDKDRLLIVKEKFRGLVAV-----PQFKGRGAPESDTDWR 419
           +KG ++SVFL EAY D+  L+DKD  L+++E+   L+        + + +GA   D    
Sbjct: 366 IKGMRDSVFLVEAYNDNGDLLDKDERLVIRERLIDLIQEGKRIRRERRRKGATLGDKSVE 425

Query: 420 ETNHGDDMRGEEWSDVDDD-DDEFDN--DGEDDWIDEQINNLEMADQRLLSPPALPY 455
           E    D+   +  SD+DD+ +D F+N  D ED  ++   +  +  D+  ++  ++ Y
Sbjct: 426 EKRKDDETIDDYDSDLDDEYEDGFENLFDSEDLGVEYHFDEEDDDDEAGVNGESVEY 472

[Close]

BLAST of CmoCh17G005450 vs. TAIR 10
Match: AT3G63090.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 194.9 bits (494), Expect = 1.4e-49
Identity = 128/339 (37.76%), Postives = 189/339 (55.75%), Query Frame = 0


Query: 51  VKWRKELPFDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIEL 110
           V W+K+   D  I++DK+ KL  R+ K ++     V+ LR L K R  L +  K +    
Sbjct: 36  VVWKKDTRLDEAIEQDKRYKLCARVVKEVLNEPGQVIPLRYLEKRRERLRLTFKAK--SF 95

Query: 111 LKMFPAVFEI----VEERAFSLKF-KLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMS 170
           ++M P++FEI    ++ ++  ++F + T        EE +I +E E LLV+KL +LLMM+
Sbjct: 96  VEMNPSLFEIYYDRIKPKSDPVQFLRPTPRLRAFLDEEQRIYSENEPLLVSKLCQLLMMA 155

Query: 171 ADKRILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRV--VATESGPALELTHWDPELAVS 230
            DK I  +K+ H++ DFG P++F   +  +YP YFR+  +  E    LEL  W+P+ A S
Sbjct: 156 KDKVISADKLVHVKRDFGFPNDFLMKLVQKYPNYFRLTGLPEEGKSFLELVSWNPDFAKS 215

Query: 231 VAELAEEENRARELEEKNLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSD 290
             EL     RA +   K  +  RP  +N VKLP G  L K       ++ +  YISPY D
Sbjct: 216 KIEL-----RAEDETLKTGVRIRP-NYN-VKLPSGFFLRKEMREWTRDWLEQDYISPYED 275

Query: 291 FSGFKAGTPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMF 350
            S     + + EK   GVVHE+LSL+L KR  V     F +EFRFS     +  RH  +F
Sbjct: 276 VSHLDQASKEMEKRTVGVVHELLSLSLLKRVPVPTLGKFCDEFRFSNAFSSVFTRHSGIF 335

Query: 351 YVSLKGDKNSVFLREAYRDSQLIDKDRLLIVKEKFRGLV 383
           Y+SLKG   +  LREAY+D +L+D+D LL +K+KF  L+
Sbjct: 336 YLSLKGGIKTAVLREAYKDDELVDRDPLLAIKDKFLRLL 365

[Close]

BLAST of CmoCh17G005450 vs. TAIR 10
Match: AT5G21970.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 176.8 bits (447), Expect = 4.0e-44
Identity = 139/450 (30.89%), Postives = 215/450 (47.78%), Query Frame = 0


Query: 6   ILPHRAYFSVKSEFWGKNLDFRNRNDSLSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQR 65
           I+P R     +S F    + F   +  + D SR+  V    I A  KW            
Sbjct: 22  IMPERNVLYGESSFRRVWVRFMTSSKRVQDRSREKRVQELEI-ATEKW------------ 81

Query: 66  DKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEERA 125
            K    V  + ++L    D +M++R   ++RR + + +  ++ + ++  P +FE+ +++ 
Sbjct: 82  -KIASKVIFLMEVLKGERDMIMTVRSFEQYRRQINLPKPHKISDFIRKSPKLFELYKDQR 141

Query: 126 FSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLP 185
             L   LTE  E L  E  K+  E        + + LMMS DK++ L+KI H R DFGLP
Sbjct: 142 GVLWCGLTEGGEDLLDEHDKLLEENGDKAAEHVTRCLMMSVDKKLPLDKIVHFRRDFGLP 201

Query: 186 SEFRDTICHRYPQYFRVVATESGPA-LELTHWDPELAVSVAELAEEENRARELEEKNLII 245
            +FR    + +PQ+F+VV    G   LEL  W+P  A++            ELE+K L I
Sbjct: 202 LDFRINWVYNFPQHFKVVKLGDGEEYLELVSWNPAWAIT------------ELEKKTLGI 261

Query: 246 DRPLKFN--------RVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGFKAGTPQKEK 305
               +           +K P   K       K+  F+   Y+SPY+D  G +AG+ + +K
Sbjct: 262 TEDCEHKPGMLSLAFPMKFPPSYKKMYRYRGKIEHFQKRSYLSPYADARGLEAGSKEFDK 321

Query: 306 HACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFL 365
            A  V+HE+LS TLEKR + DH THFR EF   Q+L  + ++H  +FYVS +G + SVFL
Sbjct: 322 RAIAVMHELLSFTLEKRLVTDHLTHFRREFVMPQKLMRIFLKHCGIFYVSERGKRFSVFL 381

Query: 366 REAYRDSQLIDKDRLLIVKEK------FRGLVAVPQFKGRGAPESDTDWRETNHGDD--- 425
            E Y   +LI+K  L++ KEK      +RG     Q         + +  E+  GD+   
Sbjct: 382 TEGYEGPELIEKCPLILWKEKLLKFTGYRGRKRDIQTYSDTLDMEERELLESGSGDEDLS 441

Query: 426 ---MRGEEWSDVDDDDDEFDNDGEDDWIDE 435
               +  ++ DV  DDDE D    +D  +E
Sbjct: 442 VGFEKDGDYDDVVTDDDEMDIGEVNDAYEE 445

[Close]

BLAST of CmoCh17G005450 vs. TAIR 10
Match: AT5G48040.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 162.9 bits (411), Expect = 6.0e-40
Identity = 118/388 (30.41%), Postives = 193/388 (49.74%), Query Frame = 0


Query: 47  IRAGVKWRKELPFDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTR 106
           +   +KW K+   D V+ R+K L+ V  +  ++    D  + +  L   R  LG+ ++ +
Sbjct: 33  VNVKLKWVKDRELDAVVVREKHLRAVCNLVSVISASPDLRLPIFKLLPHRGQLGLPQELK 92

Query: 107 LIELLKMFPAVFEIVEERAFSLK------FKLTEEAERLYFEELKIRNEMEGLLVTKLRK 166
           L   ++ +P +F  VE   +         F LT E   LY+EE+ +    E  ++ +L K
Sbjct: 93  LSAFIRRYPNIF--VEHCYWDSAGTSVPCFGLTRETIDLYYEEVDVSRVNERDVLVRLCK 152

Query: 167 LLMMSADKRILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATESG-PALELTHWDPE 226
           LLM++ ++ + L  I HLR D GLP ++RD++  ++P  F +V   S    L+L HWD  
Sbjct: 153 LLMLTCERTLSLHSIDHLRWDLGLPYDYRDSLITKHPDLFSLVKLSSDLDGLKLIHWDEH 212

Query: 227 LAVSVAELAEEENRARELEEKNLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYIS 286
           LAVS  +L E+      +         P+KF R     G  L +  +  + E++ +PY S
Sbjct: 213 LAVSQMQLREDVGNDERMA-------FPVKFTR-----GFGLKRKSIEWLQEWQRLPYTS 272

Query: 287 PYSDFSGFKAGTPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRH 346
           PY D S     T   EK   GV HE+L LT+ K+T   + ++ R+ F   Q+   +  RH
Sbjct: 273 PYVDASHLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNLRKPFALPQKFTKVFERH 332

Query: 347 PNMFYVSLKGDKNSVFLREAYRDSQLIDKDRLLIVKEKFRGLVAVPQF-KGRGAPESDTD 406
           P +FY+S+K D  +V LREAY    LI+K  L+ V+EKF  ++      + RG  +   +
Sbjct: 333 PGIFYISMKCDTQTVILREAYDRRHLIEKHPLVEVREKFANMMNEGFLDRSRGLYQKSVE 392

Query: 407 WRETNHGDDMRGEEWSDVDDDDDEFDND 427
                +        WS   D+++E DN+
Sbjct: 393 ADLEKNNIKTSYPVWS---DEEEELDNN 403

The following BLAST results are available for this feature:

BLAST of CmoCh17G005450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0MFS5	7.9e-154	59.76	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q65XL5	2.7e-146	70.16	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon...	[more]
B6TTV8	7.2e-139	66.49	Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=...	[more]
Q689D6	1.5e-35	30.20	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]
Q9ZUZ6	2.4e-25	28.06	Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W...	[more]

BLAST of CmoCh17G005450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EPZ9	3.7e-263	100.00	protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114363...	[more]
A0A6J1JV64	1.4e-254	96.75	protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111488626...	[more]
A0A1S3CG79	9.3e-198	76.11	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103500096 PE=4...	[more]
A0A5D3BY23	4.6e-197	75.45	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1DTV5	6.4e-191	74.14	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Momordica charantia OX=3673 GN=LOC1110234...	[more]

BLAST of CmoCh17G005450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01037.1	5.6e-155	59.76	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G62990.1	2.9e-58	34.05	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G63090.1	1.4e-49	37.76	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G21970.1	4.0e-44	30.89	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G48040.1	6.0e-40	30.41	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 220..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 393..411
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 389..430
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 412..430
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 442..461
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 55..383 e-value: 3.0E-106 score: 355.1
IPR040293	Protein WHAT'S THIS FACTOR 1-like	PANTHER	PTHR31476:SF4	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 18..435
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 18..435

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G005450.1	CmoCh17G005450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0003723	RNA binding