CmoCh17G005430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G005430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Location	Cmo_Chr17: 5391897 .. 5393864 (-)
RNA-Seq Expression	CmoCh17G005430
Synteny	CmoCh17G005430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGCGCTCAAATTCTTGTCAGCCCTCCAACGGAAAGTCGAACCGAAGGAGATAATAGAGAAAGGGCTCATGTTCGTGGATGCGACAATAAATTCTCGACCGAGCAAGAGCACTCTGATAGACTCTGGAGCAACCCACAACTCCATTGCCGATCAAGAAGCCCGAAGATTGGGACTCACCATAGGAAAGGACCCGGAAAAAATGAAAGCTGTCAACTCCGAGGCCTTGCCTATTGTGGGAGTTTCCAAAGGAGTCCCCTTCAAAATAGGGGATTGGACTGGAGAGTTAGACCTTGTCGTGGTTCGCATGGACGACTTCAACGTGGTACTTGGAATGGAGTTTCTCCTAGAACACAAGGTCATCCCAATGCCACTGGCGAAATGCTTGGTGATCACCGACCACAACCCCACAGTAATACCTGCAAGCATCAAGCAACCAGGTAATCTTCAGATGATCTCGGCCATACAACTGAAAAGGGGACTCGCACGAGAGGAACCTACATTCATGGCCATACCACTGATGGAAGAAGCGACCACCGAAGAGACTGTCCCAGAGGAAATCAAGGAAGTACTAAACAGTTATACCGACATAATGCCAGAGAGTCTACCCCAAACACTACCACCTCGTCGAGACATTGACCATGAAATCGAACTCCTCCCCGGGGTTAAACCGCCAGCGAAGAACGCATACCGGATGGCTCTGCCCGAGCTAGCCGAGTTGAGGAAACAACTAGATGAGTTGCTGAAGGCGGGATTCATTCGCCCGGCAAAGGTACCTTACGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAACAAGGTGACGGTACGCAACAAATATCCACTGCCGATAATATCCGACTTGTTCGACCAACTTCACGGGGCCAAGTACTTCACGAAGTTGGACTTACGATCAATGTATTACCAAGTACGTATTGCCGAAGGAGATGAACCAAAGACGACGTGCGTAACAAGATATGGGGCCTTTGAATTCCTAGTAATGCCCTTTGGCTTGACAAACGCCCCAGCTACATTTTGCATGTTGATGAACCAGATTTTCTACGAATACTTGGATCAGTTCGTCATAGTATACCTCGACGACATCGTTGTTTACAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTTGACAAGATACGGCAGAACCAACTGTATGTGAAGAAGGAGAAATGTGCATTTGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAAATGTGGACAAATTAGTATGGATAGTGACAAGATAAAAGCTATCCAAGAATGGAAAATTCCTACTTCCGTATCCGAGGTGCGGTCCTTCTTAGGATTGGCCAACTACTATAGGCAGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACCACCCTTGGTCGTGGTCGAATGATTGTCAAATGGCCTTTGAAAATCTAAAAACAACCATGACGAAGGGTCCTGTCCTCAGGTTGGTAGATGTTACAAAGCCATTTGAAATAGAAACAGATGCTTCCGACTTTGCTCTAGGTGTAGTCCTCATTCAGGAAGGCCACCCCATCGCTTACGAGAGTCGAAAGCTCAACGATGCCGAACGGAGATACACTGTCTCCGAGAAAGAAATGCTGGCTGTAGTCTACTGCCTTCGAGTCTGGAGACAGTATCGCTTAGGATCACAGTTCGTAGTGAAGACGGATAACAGCGCCATTTGCCACTTCTTTGATCAACTAAAATTAACGGCAAAACAAGCCCAGTGGCAGGAGTCGTTGGCCGAATTCGACTTCAAGTTCAAACACAAAGCAGGAAAGAGTAATCAAGCAACCGACACGCTGAGTCGGAAGGGCGAACATGCGGCCCTGTGCATGTTAGCCCATATCCATACAAGTAAGATCGATGGATAG

mRNA sequence

ATGGGCGCGCTCAAATTCTTGTCAGCCCTCCAACGGAAAGTCGAACCGAAGGAGATAATAGAGAAAGGGCTCATGTTCGTGGATGCGACAATAAATTCTCGACCGAGCAAGAGCACTCTGATAGACTCTGGAGCAACCCACAACTCCATTGCCGATCAAGAAGCCCGAAGATTGGGACTCACCATAGGAAAGGACCCGGAAAAAATGAAAGCTGTCAACTCCGAGGCCTTGCCTATTGTGGGAGTTTCCAAAGGAGTCCCCTTCAAAATAGGGGATTGGACTGGAGAGTTAGACCTTGTCGTGGTTCGCATGGACGACTTCAACGTGGTACTTGGAATGGAGTTTCTCCTAGAACACAAGGTCATCCCAATGCCACTGGCGAAATGCTTGGTGATCACCGACCACAACCCCACAGTAATACCTGCAAGCATCAAGCAACCAGGTAATCTTCAGATGATCTCGGCCATACAACTGAAAAGGGGACTCGCACGAGAGGAACCTACATTCATGGCCATACCACTGATGGAAGAAGCGACCACCGAAGAGACTGTCCCAGAGGAAATCAAGGAAGTACTAAACAGTTATACCGACATAATGCCAGAGAGTCTACCCCAAACACTACCACCTCGTCGAGACATTGACCATGAAATCGAACTCCTCCCCGGGGTTAAACCGCCAGCGAAGAACGCATACCGGATGGCTCTGCCCGAGCTAGCCGAGTTGAGGAAACAACTAGATGAGTTGCTGAAGGCGGGATTCATTCGCCCGGCAAAGGTACCTTACGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAACAAGGTGACGGTACGCAACAAATATCCACTGCCGATAATATCCGACTTGTTCGACCAACTTCACGGGGCCAAGTACTTCACGAAGTTGGACTTACGATCAATGTATTACCAAGTACGTATTGCCGAAGGAGATGAACCAAAGACGACGTGCGTAACAAGATATGGGGCCTTTGAATTCCTAGTAATGCCCTTTGGCTTGACAAACGCCCCAGCTACATTTTGCATGTTGATGAACCAGATTTTCTACGAATACTTGGATCAGTTCGTCATAGTATACCTCGACGACATCGTTGTTTACAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTTGACAAGATACGGCAGAACCAACTGTATGTGAAGAAGGAGAAATGTGCATTTGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAAATGTGGACAAATTAGTATGGATAGTGACAAGATAAAAGCTATCCAAGAATGGAAAATTCCTACTTCCGTATCCGAGGTGCGGTCCTTCTTAGGATTGGCCAACTACTATAGGCAGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACCACCCTTGGTCGTGGTCGAATGATTGTCAAATGGCCTTTGAAAATCTAAAAACAACCATGACGAAGGGTCCTGTCCTCAGGTTGGTAGATGTTACAAAGCCATTTGAAATAGAAACAGATGCTTCCGACTTTGCTCTAGGTGTAGTCCTCATTCAGGAAGGCCACCCCATCGCTTACGAGAGTCGAAAGCTCAACGATGCCGAACGGAGATACACTGTCTCCGAGAAAGAAATGCTGGCTGTAGTCTACTGCCTTCGAGTCTGGAGACAGTATCGCTTAGGATCACAGTTCGTAGTGAAGACGGATAACAGCGCCATTTGCCACTTCTTTGATCAACTAAAATTAACGGCAAAACAAGCCCAGTGGCAGGAGTCGTTGGCCGAATTCGACTTCAAGTTCAAACACAAAGCAGGAAAGAGTAATCAAGCAACCGACACGCTGAGTCGGAAGGGCGAACATGCGGCCCTGTGCATGTTAGCCCATATCCATACAAGTAAGATCGATGGATAG

Coding sequence (CDS)

ATGGGCGCGCTCAAATTCTTGTCAGCCCTCCAACGGAAAGTCGAACCGAAGGAGATAATAGAGAAAGGGCTCATGTTCGTGGATGCGACAATAAATTCTCGACCGAGCAAGAGCACTCTGATAGACTCTGGAGCAACCCACAACTCCATTGCCGATCAAGAAGCCCGAAGATTGGGACTCACCATAGGAAAGGACCCGGAAAAAATGAAAGCTGTCAACTCCGAGGCCTTGCCTATTGTGGGAGTTTCCAAAGGAGTCCCCTTCAAAATAGGGGATTGGACTGGAGAGTTAGACCTTGTCGTGGTTCGCATGGACGACTTCAACGTGGTACTTGGAATGGAGTTTCTCCTAGAACACAAGGTCATCCCAATGCCACTGGCGAAATGCTTGGTGATCACCGACCACAACCCCACAGTAATACCTGCAAGCATCAAGCAACCAGGTAATCTTCAGATGATCTCGGCCATACAACTGAAAAGGGGACTCGCACGAGAGGAACCTACATTCATGGCCATACCACTGATGGAAGAAGCGACCACCGAAGAGACTGTCCCAGAGGAAATCAAGGAAGTACTAAACAGTTATACCGACATAATGCCAGAGAGTCTACCCCAAACACTACCACCTCGTCGAGACATTGACCATGAAATCGAACTCCTCCCCGGGGTTAAACCGCCAGCGAAGAACGCATACCGGATGGCTCTGCCCGAGCTAGCCGAGTTGAGGAAACAACTAGATGAGTTGCTGAAGGCGGGATTCATTCGCCCGGCAAAGGTACCTTACGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAACAAGGTGACGGTACGCAACAAATATCCACTGCCGATAATATCCGACTTGTTCGACCAACTTCACGGGGCCAAGTACTTCACGAAGTTGGACTTACGATCAATGTATTACCAAGTACGTATTGCCGAAGGAGATGAACCAAAGACGACGTGCGTAACAAGATATGGGGCCTTTGAATTCCTAGTAATGCCCTTTGGCTTGACAAACGCCCCAGCTACATTTTGCATGTTGATGAACCAGATTTTCTACGAATACTTGGATCAGTTCGTCATAGTATACCTCGACGACATCGTTGTTTACAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTTGACAAGATACGGCAGAACCAACTGTATGTGAAGAAGGAGAAATGTGCATTTGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAAATGTGGACAAATTAGTATGGATAGTGACAAGATAAAAGCTATCCAAGAATGGAAAATTCCTACTTCCGTATCCGAGGTGCGGTCCTTCTTAGGATTGGCCAACTACTATAGGCAGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACCACCCTTGGTCGTGGTCGAATGATTGTCAAATGGCCTTTGAAAATCTAAAAACAACCATGACGAAGGGTCCTGTCCTCAGGTTGGTAGATGTTACAAAGCCATTTGAAATAGAAACAGATGCTTCCGACTTTGCTCTAGGTGTAGTCCTCATTCAGGAAGGCCACCCCATCGCTTACGAGAGTCGAAAGCTCAACGATGCCGAACGGAGATACACTGTCTCCGAGAAAGAAATGCTGGCTGTAGTCTACTGCCTTCGAGTCTGGAGACAGTATCGCTTAGGATCACAGTTCGTAGTGAAGACGGATAACAGCGCCATTTGCCACTTCTTTGATCAACTAAAATTAACGGCAAAACAAGCCCAGTGGCAGGAGTCGTTGGCCGAATTCGACTTCAAGTTCAAACACAAAGCAGGAAAGAGTAATCAAGCAACCGACACGCTGAGTCGGAAGGGCGAACATGCGGCCCTGTGCATGTTAGCCCATATCCATACAAGTAAGATCGATGGATAG

Protein sequence

MGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKSTLIDSGATHNSIADQEARRLGLTIGKDPEKMKAVNSEALPIVGVSKGVPFKIGDWTGELDLVVVRMDDFNVVLGMEFLLEHKVIPMPLAKCLVITDHNPTVIPASIKQPGNLQMISAIQLKRGLAREEPTFMAIPLMEEATTEETVPEEIKEVLNSYTDIMPESLPQTLPPRRDIDHEIELLPGVKPPAKNAYRMALPELAELRKQLDELLKAGFIRPAKVPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSMYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCMLMNQIFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKIRQNQLYVKKEKCAFAQTCINFLGHVVKCGQISMDSDKIKAIQEWKIPTSVSEVRSFLGLANYYRQFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMTKGPVLRLVDVTKPFEIETDASDFALGVVLIQEGHPIAYESRKLNDAERRYTVSEKEMLAVVYCLRVWRQYRLGSQFVVKTDNSAICHFFDQLKLTAKQAQWQESLAEFDFKFKHKAGKSNQATDTLSRKGEHAALCMLAHIHTSKIDG

Homology

[Close]

BLAST of CmoCh17G005430 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-85
Identity = 164/415 (39.52%), Postives = 256/415 (61.69%), Query Frame = 0


Query: 227 AKNAYRMALPELAELRKQLDELLKAGFIRPAKVPYGAPV-LFQKKKDGT----LRLCIDY 286
           +K +Y  A  +  E+  Q+ ++L  G IR +  PY +P+ +  KK+D +     R+ IDY
Sbjct: 211 SKYSYPQAYEQ--EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDY 270

Query: 287 RALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSMYYQVRIAEGDEPKTTCVTRYGA 346
           R LN++TV +++P+P + ++  +L    YFT +DL   ++Q+ +      KT   T++G 
Sbjct: 271 RKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGH 330

Query: 347 FEFLVMPFGLTNAPATFCMLMNQIFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDK 406
           +E+L MPFGL NAPATF   MN I    L++  +VYLDDI+V+ST+L+EH   L LVF+K
Sbjct: 331 YEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEK 390

Query: 407 IRQNQLYVKKEKCAFAQTCINFLGHVVKCGQISMDSDKIKAIQEWKIPTSVSEVRSFLGL 466
           + +  L ++ +KC F +    FLGHV+    I  + +KI+AIQ++ IPT   E+++FLGL
Sbjct: 391 LAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGL 450

Query: 467 ANYYRQFVEGFSRRAAPLTELLKKDHPWSWSN-DCQMAFENLKTTMTKGPVLRLVDVTKP 526
             YYR+F+  F+  A P+T+ LKK+     +N +   AF+ LK  +++ P+L++ D TK 
Sbjct: 451 TGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKK 510

Query: 527 FEIETDASDFALGVVLIQEGHPIAYESRKLNDAERRYTVSEKEMLAVVYCLRVWRQYRLG 586
           F + TDASD ALG VL Q+GHP++Y SR LN+ E  Y+  EKE+LA+V+  + +R Y LG
Sbjct: 511 FTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLG 570

Query: 587 SQFVVKTDNSAICHFFDQLKLTAKQAQWQESLAEFDFKFKHKAGKSNQATDTLSR 636
             F + +D+  +   +      +K  +W+  L+EFDF  K+  GK N   D LSR
Sbjct: 571 RHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

[Close]

BLAST of CmoCh17G005430 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.2e-82
Identity = 164/417 (39.33%), Postives = 244/417 (58.51%), Query Frame = 0


Query: 225 PPAKNAYRMALPELAELRKQLDELLKAGFIRPAKVPYGAPV-LFQKKKDGT----LRLCI 284
           P     Y +A     E+  Q+ E+L  G IR +  PY +P  +  KK D +     R+ I
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265

Query: 285 DYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSMYYQVRIAEGDEPKTTCVTRY 344
           DYR LN++T+ ++YP+P + ++  +L   +YFT +DL   ++Q+ + E    KT   T+ 
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325

Query: 345 GAFEFLVMPFGLTNAPATFCMLMNQIFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVF 404
           G +E+L MPFGL NAPATF   MN I    L++  +VYLDDI+++ST+L EH   ++LVF
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

Query: 405 DKIRQNQLYVKKEKCAFAQTCINFLGHVVKCGQISMDSDKIKAIQEWKIPTSVSEVRSFL 464
            K+    L ++ +KC F +   NFLGH+V    I  +  K+KAI  + IPT   E+R+FL
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL 445

Query: 465 GLANYYRQFVEGFSRRAAPLTELLKKDHPWSWSN-DCQMAFENLKTTMTKGPVLRLVDVT 524
           GL  YYR+F+  ++  A P+T  LKK         +   AFE LK  + + P+L+L D  
Sbjct: 446 GLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFE 505

Query: 525 KPFEIETDASDFALGVVLIQEGHPIAYESRKLNDAERRYTVSEKEMLAVVYCLRVWRQYR 584
           K F + TDAS+ ALG VL Q GHPI++ SR LND E  Y+  EKE+LA+V+  + +R Y 
Sbjct: 506 KKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYL 565

Query: 585 LGSQFVVKTDNSAICHFFDQLKLTAKQAQWQESLAEFDFKFKHKAGKSNQATDTLSR 636
           LG QF++ +D+  +    +  +  AK  +W+  L+E+ FK  +  GK N   D LSR
Sbjct: 566 LGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

[Close]

BLAST of CmoCh17G005430 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.7e-81
Identity = 166/460 (36.09%), Postives = 265/460 (57.61%), Query Frame = 0


Query: 187 EIKEVLNSYTDIMPESLPQTLP-PRRDIDHEIELL-PGVKPPAKNAYRMALPELAELRKQ 246
           E+ ++   + DI  E+  + LP P + ++ E+EL     + P +N Y +   ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 247 LDELLKAGFIRPAKVPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQ 306
           +++ LK+G IR +K     PV+F  KK+GTLR+ +DY+ LNK    N YPLP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 307 LHGAKYFTKLDLRSMYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCMLMNQ 366
           + G+  FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ APA F   +N 
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552

Query: 367 IFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKIRQNQLYVKKEKCAFAQTCINFL 426
           I  E  +  V+ Y+DDI+++S +  EH  H+K V  K++   L + + KC F Q+ + F+
Sbjct: 553 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFI 612

Query: 427 GHVVKCGQISMDSDKIKAIQEWKIPTSVSEVRSFLGLANYYRQFVEGFSRRAAPLTELLK 486
           G+ +     +   + I  + +WK P +  E+R FLG  NY R+F+   S+   PL  LLK
Sbjct: 613 GYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLK 672

Query: 487 KDHPWSWSNDCQMAFENLKTTMTKGPVLRLVDVTKPFEIETDASDFALGVVLIQEG---- 546
           KD  W W+     A EN+K  +   PVLR  D +K   +ETDASD A+G VL Q+     
Sbjct: 673 KDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK 732

Query: 547 -HPIAYESRKLNDAERRYTVSEKEMLAVVYCLRVWRQYRLGS--QFVVKTDN-SAICHFF 606
            +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR Y   +   F + TD+ + I    
Sbjct: 733 YYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRIT 792

Query: 607 DQLKLTAKQ-AQWQESLAEFDFKFKHKAGKSNQATDTLSR 636
           ++ +   K+ A+WQ  L +F+F+  ++ G +N   D LSR
Sbjct: 793 NESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831

[Close]

BLAST of CmoCh17G005430 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.7e-81
Identity = 166/460 (36.09%), Postives = 265/460 (57.61%), Query Frame = 0


Query: 187 EIKEVLNSYTDIMPESLPQTLP-PRRDIDHEIELL-PGVKPPAKNAYRMALPELAELRKQ 246
           E+ ++   + DI  E+  + LP P + ++ E+EL     + P +N Y +   ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 247 LDELLKAGFIRPAKVPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQ 306
           +++ LK+G IR +K     PV+F  KK+GTLR+ +DY+ LNK    N YPLP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 307 LHGAKYFTKLDLRSMYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCMLMNQ 366
           + G+  FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ APA F   +N 
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552

Query: 367 IFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKIRQNQLYVKKEKCAFAQTCINFL 426
           I  E  +  V+ Y+DDI+++S +  EH  H+K V  K++   L + + KC F Q+ + F+
Sbjct: 553 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFI 612

Query: 427 GHVVKCGQISMDSDKIKAIQEWKIPTSVSEVRSFLGLANYYRQFVEGFSRRAAPLTELLK 486
           G+ +     +   + I  + +WK P +  E+R FLG  NY R+F+   S+   PL  LLK
Sbjct: 613 GYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLK 672

Query: 487 KDHPWSWSNDCQMAFENLKTTMTKGPVLRLVDVTKPFEIETDASDFALGVVLIQEG---- 546
           KD  W W+     A EN+K  +   PVLR  D +K   +ETDASD A+G VL Q+     
Sbjct: 673 KDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK 732

Query: 547 -HPIAYESRKLNDAERRYTVSEKEMLAVVYCLRVWRQYRLGS--QFVVKTDN-SAICHFF 606
            +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR Y   +   F + TD+ + I    
Sbjct: 733 YYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRIT 792

Query: 607 DQLKLTAKQ-AQWQESLAEFDFKFKHKAGKSNQATDTLSR 636
           ++ +   K+ A+WQ  L +F+F+  ++ G +N   D LSR
Sbjct: 793 NESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831

[Close]

BLAST of CmoCh17G005430 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.7e-81
Identity = 166/460 (36.09%), Postives = 265/460 (57.61%), Query Frame = 0


Query: 187 EIKEVLNSYTDIMPESLPQTLP-PRRDIDHEIELL-PGVKPPAKNAYRMALPELAELRKQ 246
           E+ ++   + DI  E+  + LP P + ++ E+EL     + P +N Y +   ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 247 LDELLKAGFIRPAKVPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQ 306
           +++ LK+G IR +K     PV+F  KK+GTLR+ +DY+ LNK    N YPLP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 307 LHGAKYFTKLDLRSMYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCMLMNQ 366
           + G+  FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ APA F   +N 
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552

Query: 367 IFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKIRQNQLYVKKEKCAFAQTCINFL 426
           I  E  +  V+ Y+DDI+++S +  EH  H+K V  K++   L + + KC F Q+ + F+
Sbjct: 553 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFI 612

Query: 427 GHVVKCGQISMDSDKIKAIQEWKIPTSVSEVRSFLGLANYYRQFVEGFSRRAAPLTELLK 486
           G+ +     +   + I  + +WK P +  E+R FLG  NY R+F+   S+   PL  LLK
Sbjct: 613 GYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLK 672

Query: 487 KDHPWSWSNDCQMAFENLKTTMTKGPVLRLVDVTKPFEIETDASDFALGVVLIQEG---- 546
           KD  W W+     A EN+K  +   PVLR  D +K   +ETDASD A+G VL Q+     
Sbjct: 673 KDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK 732

Query: 547 -HPIAYESRKLNDAERRYTVSEKEMLAVVYCLRVWRQYRLGS--QFVVKTDN-SAICHFF 606
            +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR Y   +   F + TD+ + I    
Sbjct: 733 YYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRIT 792

Query: 607 DQLKLTAKQ-AQWQESLAEFDFKFKHKAGKSNQATDTLSR 636
           ++ +   K+ A+WQ  L +F+F+  ++ G +N   D LSR
Sbjct: 793 NESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831

[Close]

BLAST of CmoCh17G005430 vs. ExPASy TrEMBL
Match: A0A6J1D906 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1)

HSP 1 Score: 1052.0 bits (2719), Expect = 1.0e-303
Identity = 516/656 (78.66%), Postives = 579/656 (88.26%), Query Frame = 0


Query: 1    MGALKFLSALQRKVE-PKEIIEKGLMFVDATINSRPSKSTLIDSGATHNSIADQEARRLG 60
            M ALKFLSA+Q++V  PK   EKGLMFVDATIN   +KST++DSGATHN I++QEARRL 
Sbjct: 430  MRALKFLSAIQKRVNGPKGTSEKGLMFVDATINCNXAKSTMVDSGATHNFISEQEARRLK 489

Query: 61   LTIGKDPEKMKAVNSEALPIVGVSKGVPFKIGDWTGELDLVVVRMDDFNVVLGMEFLLEH 120
            LTI KD  KMK VN EALPIVGVSK V  K+G WTG +D VVVRMDDF+VVLGMEFL+EH
Sbjct: 490  LTIEKDTGKMKVVNFEALPIVGVSKRVMLKLGTWTGSVDFVVVRMDDFDVVLGMEFLIEH 549

Query: 121  KVIPMPLAKCLVITDHNPTVIPASIKQPGNLQMISAIQLKRGLAREEPTFMAIPLMEEAT 180
            KVIPMPLAKC+++T ++PTV+  SIKQPG ++MISA+QLK+GL REEPTFMAIP++E+  
Sbjct: 550  KVIPMPLAKCMIVTSNSPTVVTTSIKQPGGIRMISALQLKKGLNREEPTFMAIPMVEQPV 609

Query: 181  TEETVPEEIKEVLNSYTDIMPESLPQTLPPRRDIDHEIELLPGVKPPAKNAYRMALPELA 240
                VP EI+ V+  Y DIMP+SLP+TLPPRR IDHEIEL+PG KPPAKNAYRMA PELA
Sbjct: 610  ETRDVPPEIQVVMKEYVDIMPDSLPKTLPPRRGIDHEIELIPGAKPPAKNAYRMAPPELA 669

Query: 241  ELRKQLDELLKAGFIRPAKVPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIIS 300
            ELRKQLDELL AGFIRPAK P+GAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPII+
Sbjct: 670  ELRKQLDELLNAGFIRPAKAPFGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIIT 729

Query: 301  DLFDQLHGAKYFTKLDLRSMYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC 360
            DLFDQLHGAKYFTKLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVM FGLTNAPATFC
Sbjct: 730  DLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMXFGLTNAPATFC 789

Query: 361  MLMNQIFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKIRQNQLYVKKEKCAFAQT 420
             +MNQ+F+EYLDQFV+VYLDDIVVYS TL+EH++HL+LVFDK+RQNQLYVKKEKCAFAQ 
Sbjct: 790  TMMNQVFHEYLDQFVVVYLDDIVVYSPTLKEHQIHLRLVFDKLRQNQLYVKKEKCAFAQK 849

Query: 421  CINFLGHVVKCGQISMDSDKIKAIQEWKIPTSVSEVRSFLGLANYYRQFVEGFSRRAAPL 480
             I FLGHV++ GQISMD+DK+KAIQEW++PTSV E+RSFLGLANYYR+F+EGFSRRA P+
Sbjct: 850  RIXFLGHVIEQGQISMDTDKVKAIQEWRVPTSVIELRSFLGLANYYRRFIEGFSRRATPM 909

Query: 481  TELLKKDHPWSWSNDCQMAFENLKTTMTKGPVLRLVDVTKPFEIETDASDFALGVVLIQE 540
            TELLKK   W WS + Q AFE+LK  M KGPVL L DVTKPFE+ETDASD+ALG VL+Q+
Sbjct: 910  TELLKKGMTWMWSKESQDAFEDLKAAMMKGPVLGLADVTKPFEVETDASDYALGGVLLQD 969

Query: 541  GHPIAYESRKLNDAERRYTVSEKEMLAVVYCLRVWRQYRLGSQFVVKTDNSAICHFFDQL 600
             HPI YESRKLN+AERRYTVSEKEMLAVV+CLR WRQY LGS FVVKTDNSAICHFF+Q 
Sbjct: 970  DHPIXYESRKLNNAERRYTVSEKEMLAVVHCLRSWRQYLLGSXFVVKTDNSAICHFFNQP 1029

Query: 601  KLTAKQAQWQESLAEFDFKFKHKAGKSNQATDTLSRKGEHAALCMLAHIHTSKIDG 656
            KLT+KQA+WQE LAEFDFKF+HKAGKSNQA D LSRKGEHA LCMLAHIHTSK DG
Sbjct: 1030 KLTSKQARWQELLAEFDFKFEHKAGKSNQAADALSRKGEHAXLCMLAHIHTSKADG 1085

[Close]

BLAST of CmoCh17G005430 vs. ExPASy TrEMBL
Match: A0A5A7T3M3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002020 PE=4 SV=1)

HSP 1 Score: 991.9 bits (2563), Expect = 1.3e-285
Identity = 480/656 (73.17%), Postives = 565/656 (86.13%), Query Frame = 0


Query: 1    MGALKFLSALQRKV-EPKEIIEKGLMFVDATINSRPSKSTLIDSGATHNSIADQEARRLG 60
            MGALKFLS+LQ+KV E    +E+GLM+VD  IN +P+KST++DSGATHN I + EA+RL 
Sbjct: 441  MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 500

Query: 61   LTIGKDPEKMKAVNSEALPIVGVSKGVPFKIGDWTGELDLVVVRMDDFNVVLGMEFLLEH 120
            L   KD E+MKAVNS ALPI+G+ K    ++G W+G +D VVV+MDDF+VVLGMEFLLEH
Sbjct: 501  LRWEKDAERMKAVNSAALPIIGLVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEH 560

Query: 121  KVIPMPLAKCLVITDHNPTVIPASIKQPGNLQMISAIQLKRGLAREEPTFMAIPLMEEAT 180
            +VIPMPLAKCLVIT   P+V+   ++QP  L+MISA+QLK+GL+R+EPTFMAIPL     
Sbjct: 561  QVIPMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSEN 620

Query: 181  TEETVPEEIKEVLNSYTDIMPESLPQTLPPRRDIDHEIELLPGVKPPAKNAYRMALPELA 240
            + ETVP+EI  VL  Y D+MP+SLP++LPPRR IDHEIEL+PG KPPAKNAYRMA PELA
Sbjct: 621  SGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELA 680

Query: 241  ELRKQLDELLKAGFIRPAKVPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIIS 300
            ELRKQLDELL AGFIRPAK PYGAPVLFQ+KKDG+LRLCIDYRALNK+TVRNKYPLPII+
Sbjct: 681  ELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIIT 740

Query: 301  DLFDQLHGAKYFTKLDLRSMYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC 360
            DLFD+LHGAKYF+KLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC
Sbjct: 741  DLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC 800

Query: 361  MLMNQIFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKIRQNQLYVKKEKCAFAQT 420
             LMNQ+F+EYLD+FV+VYLDDIVVYSTT+EEH+ HL+ VF K+++NQLYVK+EKC+FAQ 
Sbjct: 801  TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQE 860

Query: 421  CINFLGHVVKCGQISMDSDKIKAIQEWKIPTSVSEVRSFLGLANYYRQFVEGFSRRAAPL 480
             INFLGHV++CG+I M+  KI AI++W +P SVSE+RSFLGLANYYR+FVEGFS+RA+PL
Sbjct: 861  RINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPL 920

Query: 481  TELLKKDHPWSWSNDCQMAFENLKTTMTKGPVLRLVDVTKPFEIETDASDFALGVVLIQE 540
            TELLKKD  W+W  +CQ AF+ LK  + +GP+L + DVTKPFE+ETDASD+ALG VL+Q 
Sbjct: 921  TELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQN 980

Query: 541  GHPIAYESRKLNDAERRYTVSEKEMLAVVYCLRVWRQYRLGSQFVVKTDNSAICHFFDQL 600
            GHPIAYESRKLN AERRYTVSEKEMLAVV+CLR WRQY LGS FVVKTDNSA CHFF Q 
Sbjct: 981  GHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQP 1040

Query: 601  KLTAKQAQWQESLAEFDFKFKHKAGKSNQATDTLSRKGEHAALCMLAHIHTSKIDG 656
            KLT+KQA+WQE LAEFDF+F+HK G SNQA D LSRK EHAA+C+LAH+  S+I G
Sbjct: 1041 KLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLQGSEIGG 1096

[Close]

BLAST of CmoCh17G005430 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 989.9 bits (2558), Expect = 4.9e-285
Identity = 480/656 (73.17%), Postives = 564/656 (85.98%), Query Frame = 0


Query: 1    MGALKFLSALQRKV-EPKEIIEKGLMFVDATINSRPSKSTLIDSGATHNSIADQEARRLG 60
            MGALKFLS+LQ+KV E    +E+GLM+VD  IN +P+KST++DSGATHN I + EA+RL 
Sbjct: 411  MGALKFLSSLQKKVGETNTPVERGLMYVDTWINEKPTKSTMVDSGATHNFITEAEAKRLN 470

Query: 61   LTIGKDPEKMKAVNSEALPIVGVSKGVPFKIGDWTGELDLVVVRMDDFNVVLGMEFLLEH 120
            L   KD  +MKAVNS ALPI+G+ K    ++G W+G +D VVV+MDDF+VVLGMEFLLEH
Sbjct: 471  LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEH 530

Query: 121  KVIPMPLAKCLVITDHNPTVIPASIKQPGNLQMISAIQLKRGLAREEPTFMAIPLMEEAT 180
            +VIPMPLAKCLVIT   P+V+   ++QP  L+MISA+QLK+GL+R+EPTFMAIPL     
Sbjct: 531  QVIPMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLNSSEN 590

Query: 181  TEETVPEEIKEVLNSYTDIMPESLPQTLPPRRDIDHEIELLPGVKPPAKNAYRMALPELA 240
            + ETVP+EI  VL  Y D+MP+SLP++LPPRR IDHEIEL+PG KPPAKNAYRMA PELA
Sbjct: 591  SGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELA 650

Query: 241  ELRKQLDELLKAGFIRPAKVPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIIS 300
            ELRKQLDELL AGFIRPAK PYGAPVLFQKKKDG+LRLCIDYRALNK+TVRNKYPLPII+
Sbjct: 651  ELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIIT 710

Query: 301  DLFDQLHGAKYFTKLDLRSMYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC 360
            DLFD+LHGAKYF+KLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC
Sbjct: 711  DLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC 770

Query: 361  MLMNQIFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKIRQNQLYVKKEKCAFAQT 420
             LMNQ+F+EYLD+FV+VYLDDIVVYSTT+EEH+ HL+ VF K+++NQLYVK+EKC+FAQ 
Sbjct: 771  TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQE 830

Query: 421  CINFLGHVVKCGQISMDSDKIKAIQEWKIPTSVSEVRSFLGLANYYRQFVEGFSRRAAPL 480
             INFLGHV++CG+I M+  KI AI++W +P SVSE+RSFLGLANYYR+FVEGFS+RA+PL
Sbjct: 831  RINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPL 890

Query: 481  TELLKKDHPWSWSNDCQMAFENLKTTMTKGPVLRLVDVTKPFEIETDASDFALGVVLIQE 540
            TELLKKD  W+W  +CQ AF+ LK  + +GP+L + DVTKPFE+ETDASD+ALG VL+Q 
Sbjct: 891  TELLKKDVHWNWDPECQAAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQN 950

Query: 541  GHPIAYESRKLNDAERRYTVSEKEMLAVVYCLRVWRQYRLGSQFVVKTDNSAICHFFDQL 600
            GHPIAYESRKLN AERRYTVSEKEMLAVV+CLR WRQY LGS FVVKTDNSA CHFF Q 
Sbjct: 951  GHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQP 1010

Query: 601  KLTAKQAQWQESLAEFDFKFKHKAGKSNQATDTLSRKGEHAALCMLAHIHTSKIDG 656
            KLT+KQA+WQE LAEFDF+F+HK G SNQA D LSRK EHAA+C+LAH+  S+I G
Sbjct: 1011 KLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLQGSEIGG 1066

[Close]

BLAST of CmoCh17G005430 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 989.2 bits (2556), Expect = 8.3e-285
Identity = 479/656 (73.02%), Postives = 564/656 (85.98%), Query Frame = 0


Query: 1    MGALKFLSALQRKV-EPKEIIEKGLMFVDATINSRPSKSTLIDSGATHNSIADQEARRLG 60
            MGALKFLS+LQ+KV E    +E+GLM+VD  IN +P+KST++DSGATHN I + EA+RL 
Sbjct: 441  MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 500

Query: 61   LTIGKDPEKMKAVNSEALPIVGVSKGVPFKIGDWTGELDLVVVRMDDFNVVLGMEFLLEH 120
            L   KD  +MKAVNS ALPI+G+ K    ++G W+G +D VVV+MDDF+VVLGMEFLLEH
Sbjct: 501  LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEH 560

Query: 121  KVIPMPLAKCLVITDHNPTVIPASIKQPGNLQMISAIQLKRGLAREEPTFMAIPLMEEAT 180
            +VIPMPLAKCLVIT   P+V+   ++QP  L+MISA+QLK+GL+R+EPTFMAIPL     
Sbjct: 561  QVIPMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSEN 620

Query: 181  TEETVPEEIKEVLNSYTDIMPESLPQTLPPRRDIDHEIELLPGVKPPAKNAYRMALPELA 240
            + ETVP+EI  VL  Y D+MP+SLP++LPPRR IDHEIEL+PG KPPAKNAYRMA PELA
Sbjct: 621  SGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELA 680

Query: 241  ELRKQLDELLKAGFIRPAKVPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIIS 300
            ELRKQLDELL AGFIRPAK PYGAPVLFQ+KKDG+LRLCIDYRALNK+TVRNKYPLPII+
Sbjct: 681  ELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIIT 740

Query: 301  DLFDQLHGAKYFTKLDLRSMYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC 360
            DLFD+LHGAKYF+KLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC
Sbjct: 741  DLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC 800

Query: 361  MLMNQIFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKIRQNQLYVKKEKCAFAQT 420
             LMNQ+F+EYLD+FV+VYLDDIVVYSTT+EEH+ HL+ VF K+++NQLYVK+EKC+FAQ 
Sbjct: 801  TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQE 860

Query: 421  CINFLGHVVKCGQISMDSDKIKAIQEWKIPTSVSEVRSFLGLANYYRQFVEGFSRRAAPL 480
             INFLGHV++CG+I M+  KI AI++W +P SVSE+RSFLGLANYYR+FVEGFS+RA+PL
Sbjct: 861  RINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPL 920

Query: 481  TELLKKDHPWSWSNDCQMAFENLKTTMTKGPVLRLVDVTKPFEIETDASDFALGVVLIQE 540
            TELLKKD  W+W  +CQ AF+ LK  + +GP+L + DVTKPFE+ETDASD+ALG VL+Q 
Sbjct: 921  TELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQN 980

Query: 541  GHPIAYESRKLNDAERRYTVSEKEMLAVVYCLRVWRQYRLGSQFVVKTDNSAICHFFDQL 600
            GHPIAYESRKLN AERRYTVSEKEMLAVV+CLR WRQY LGS FVVKTDNSA CHFF Q 
Sbjct: 981  GHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQP 1040

Query: 601  KLTAKQAQWQESLAEFDFKFKHKAGKSNQATDTLSRKGEHAALCMLAHIHTSKIDG 656
            KLT+KQA+WQE LAEFDF+F+HK G SNQA D LSRK EHAA+C+LAH+  S+I G
Sbjct: 1041 KLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLQGSEIGG 1096

[Close]

BLAST of CmoCh17G005430 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 989.2 bits (2556), Expect = 8.3e-285
Identity = 479/656 (73.02%), Postives = 564/656 (85.98%), Query Frame = 0


Query: 1    MGALKFLSALQRKV-EPKEIIEKGLMFVDATINSRPSKSTLIDSGATHNSIADQEARRLG 60
            MGALKFLS+LQ+KV E    +E+GLM+VD  IN +P+KST++DSGATHN I + EA+RL 
Sbjct: 441  MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 500

Query: 61   LTIGKDPEKMKAVNSEALPIVGVSKGVPFKIGDWTGELDLVVVRMDDFNVVLGMEFLLEH 120
            L   KD  +MKAVNS ALPI+G+ K    ++G W+G +D VVV+MDDF+VVLGMEFLLEH
Sbjct: 501  LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEH 560

Query: 121  KVIPMPLAKCLVITDHNPTVIPASIKQPGNLQMISAIQLKRGLAREEPTFMAIPLMEEAT 180
            +VIPMPLAKCLVIT   P+V+   ++QP  L+MISA+QLK+GL+R+EPTFMAIPL     
Sbjct: 561  QVIPMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSEN 620

Query: 181  TEETVPEEIKEVLNSYTDIMPESLPQTLPPRRDIDHEIELLPGVKPPAKNAYRMALPELA 240
            + ETVP+EI  VL  Y D+MP+SLP++LPPRR IDHEIEL+PG KPPAKNAYRMA PELA
Sbjct: 621  SGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELA 680

Query: 241  ELRKQLDELLKAGFIRPAKVPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIIS 300
            ELRKQLDELL AGFIRPAK PYGAPVLFQ+KKDG+LRLCIDYRALNK+TVRNKYPLPII+
Sbjct: 681  ELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIIT 740

Query: 301  DLFDQLHGAKYFTKLDLRSMYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC 360
            DLFD+LHGAKYF+KLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC
Sbjct: 741  DLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC 800

Query: 361  MLMNQIFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKIRQNQLYVKKEKCAFAQT 420
             LMNQ+F+EYLD+FV+VYLDDIVVYSTT+EEH+ HL+ VF K+++NQLYVK+EKC+FAQ 
Sbjct: 801  TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQE 860

Query: 421  CINFLGHVVKCGQISMDSDKIKAIQEWKIPTSVSEVRSFLGLANYYRQFVEGFSRRAAPL 480
             INFLGHV++CG+I M+  KI AI++W +P SVSE+RSFLGLANYYR+FVEGFS+RA+PL
Sbjct: 861  RINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPL 920

Query: 481  TELLKKDHPWSWSNDCQMAFENLKTTMTKGPVLRLVDVTKPFEIETDASDFALGVVLIQE 540
            TELLKKD  W+W  +CQ AF+ LK  + +GP+L + DVTKPFE+ETDASD+ALG VL+Q 
Sbjct: 921  TELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQN 980

Query: 541  GHPIAYESRKLNDAERRYTVSEKEMLAVVYCLRVWRQYRLGSQFVVKTDNSAICHFFDQL 600
            GHPIAYESRKLN AERRYTVSEKEMLAVV+CLR WRQY LGS FVVKTDNSA CHFF Q 
Sbjct: 981  GHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQP 1040

Query: 601  KLTAKQAQWQESLAEFDFKFKHKAGKSNQATDTLSRKGEHAALCMLAHIHTSKIDG 656
            KLT+KQA+WQE LAEFDF+F+HK G SNQA D LSRK EHAA+C+LAH+  S+I G
Sbjct: 1041 KLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLQGSEIGG 1096

[Close]

BLAST of CmoCh17G005430 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 2.3e-21
Identity = 53/130 (40.77%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 394 HLKLVFDKIRQNQLYVKKEKCAFAQTCINFLG--HVVKCGQISMDSDKIKAIQEWKIPTS 453
           HL +V     Q+Q Y  ++KCAF Q  I +LG  H++    +S D  K++A+  W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 454 VSEVRSFLGLANYYRQFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMTKGPV 513
            +E+R FLGL  YYR+FV+ + +   PLTELLKK +   W+    +AF+ LK  +T  PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWTEMAALAFKALKGAVTTLPV 122

Query: 514 LRLVDVTKPF 522
           L L D+  PF
Sbjct: 123 LALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of CmoCh17G005430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.2e-85	39.52	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	5.2e-82	39.33	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	9.7e-81	36.09	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	9.7e-81	36.09	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	9.7e-81	36.09	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh17G005430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D906	1.0e-303	78.66	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1	[more]
A0A5A7T3M3	1.3e-285	73.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3C9P8	4.9e-285	73.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5D3C4R1	8.3e-285	73.02	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	8.3e-285	73.02	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of CmoCh17G005430 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.3e-21	40.77	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 8..142 e-value: 2.0E-19 score: 71.6
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 22..121
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 213..353 e-value: 1.3E-86 score: 291.2
None	No IPR available	PFAM	PF13975	gag-asp_proteas	coord: 27..116 e-value: 1.2E-8 score: 35.4
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 229..616
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 229..616
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 27..116 e-value: 1.38609E-17 score: 76.2212
None	No IPR available	CDD	cd01647	RT_LTR	coord: 252..428 e-value: 2.42712E-88 score: 271.006
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 522..636 e-value: 2.25141E-51 score: 171.522
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 437..527 e-value: 1.2E-29 score: 104.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 293..428 e-value: 1.3E-86 score: 291.2
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 491..585 e-value: 2.3E-31 score: 107.7
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 269..427 e-value: 1.6E-28 score: 99.7
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 247..428 score: 14.102862
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 191..621

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G005430.1	CmoCh17G005430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding