CmoCh17G005090 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G005090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	major pollen allergen Ole e 6-like
Location	Cmo_Chr17: 4856455 .. 4857942 (+)
RNA-Seq Expression	CmoCh17G005090
Synteny	CmoCh17G005090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCGGAGTATAAGGAATCACTACAAGAGAAGTAAGATTCGAATTAACTTGTTGATCGAATATCTCAAGGTAAGAACATTTGTTTGAGATTCAAATCACTCCACAAGCAAGATCGATCATGTGTAGCTTGAATGATTCTAAACATTCAATCTAAATTGTATAGAATTCCAAAGATAATCATTGGTCAAAGGAAAGAAAAAATGATCTTTTTACTTCATTTTTCAAGTCTACTTTACCAAGATAACATACATGGTTTTATATAGAATTCCAAAGAAACACAGTCATTGGTCAAAGGAAAGAAAAAAAAGGATCTTTTTACTCCATTTTTCAAGTCTACTTTATCAAGATAAGATACATGGTTTTATATAGTTTCACCTTACATGAAACATTCCAAGAGTTTGTAAATTTCATATATTATGAGAATAATTAGCCAGTAAATGTAGCCTTCAAGCAAATTAAAAAGTCATAAAATTTGCTTATAAGGGTGTTTCCCCCTCAAGGTTTTTAAAACGCGTTTATTAGGGAGGGATTTCCACACCCTTAGTGTTTCGCTCTCCTCCCAACTAATGTGGGATCTCACAATCCACCCTTCAGGGTAAGCGTCCTCGTTGACACTTGTTCCTTACTAGTCCCACAATCCACCCCTTCGGGGCCAGAGTTCTCACTCGCACTCGTTTCTTGTTGACCTAGTATATGTTTTCGATATACTTTTTGAGTGAATTACATTTCTAATACCTAAGATTTGGAGTTGGTATTTATTTGGTGACATAAGTTTGGAGATTTGAGAGGAAATTTGGTTGGTTATGGATAGTATTTGTTATAAATGAAAGGCATACAATTTTTGTTATTAGGGAACCAAATATATGGGCGAAAATAAGGGTATTGATCTAAATTTAGGTTTGGTAGAAGCTTATAAAAGGGTTGCTAAGCTTTTGAAACATTCATCCACTCGCAAAAAGAAGCATTGGAAAGGCACAAGAAAAAGCATAAAATAAAATAAAATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGGTGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGCGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAATGCGAGAAGGAATGCCTTGAAAAGGGCAATGGCCAAAGCTTCTGCGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGGTATGTTCTCTTCCTTTTTAAATCATTTTTATTTTCTCTTAATAATTAATTAATTAATTCATTATTGTATTTGTATTTGTTTCACAGATAAGCTACACATCAAGGTGAAGAACTGAATAATGGAATGCAAAACAAACAGGGCTCTTAACAAGGATCTAAATAATAATTGTATTCAAGTTTAAGCTTGTAAGATGGAGTTTCATAAACCTTCTTTCTCCTCAATTTTTGAGAATTTGATATGAATCATGAATGTTA

mRNA sequence

ATGTTCCGGAGTATAAGGAATCACTACAAGAGAAGTAAGATTCGAATTAACTTGTTGATCGAATATCTCAAGGTTTCGAGTGCCACTGAAAGCGCGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAATGCGAGAAGGAATGCCTTGAAAAGGGCAATGGCCAAAGCTTCTGCGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGATAAGCTACACATCAAGGTGAAGAACTGAATAATGGAATGCAAAACAAACAGGGCTCTTAACAAGGATCTAAATAATAATTGTATTCAAGTTTAAGCTTGTAAGATGGAGTTTCATAAACCTTCTTTCTCCTCAATTTTTGAGAATTTGATATGAATCATGAATGTTA

Coding sequence (CDS)

ATGTTCCGGAGTATAAGGAATCACTACAAGAGAAGTAAGATTCGAATTAACTTGTTGATCGAATATCTCAAGGTTTCGAGTGCCACTGAAAGCGCGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAATGCGAGAAGGAATGCCTTGAAAAGGGCAATGGCCAAAGCTTCTGCGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGATAAGCTACACATCAAGGTGAAGAACTGA

Protein sequence

MFRSIRNHYKRSKIRINLLIEYLKVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADKLHIKVKN

Homology

[Close]

BLAST of CmoCh17G005090 vs. ExPASy Swiss-Prot
Match: O24172 (Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-08
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 42 EAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADKL-HIKVKN 90
          EA+++ CY+ C KEC +KGNG +FCE+KCD DC  K+  +KL + K KN
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKLENYKPKN 50

[Close]

BLAST of CmoCh17G005090 vs. ExPASy TrEMBL
Match: A0A6J1EQ21 (major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.0e-29
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 18 LLIEYLKVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEK 77
          +++  L+VSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEK
Sbjct: 14 VVVAALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEK 73

Query: 78 EAADKLHIKVKN 90
          EAADKLHIKVKN
Sbjct: 74 EAADKLHIKVKN 85

[Close]

BLAST of CmoCh17G005090 vs. ExPASy TrEMBL
Match: A0A6J1JXL5 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488756 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.0e-28
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 23 LKVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADK 82
          L+VSSATES KEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADK
Sbjct: 19 LQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADK 78

Query: 83 LHIKVKN 90
          LHIKVKN
Sbjct: 79 LHIKVKN 85

[Close]

BLAST of CmoCh17G005090 vs. ExPASy TrEMBL
Match: A0A6J1JWQ7 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488152 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.0e-28
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 23 LKVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADK 82
          L+VSSATES KEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADK
Sbjct: 15 LQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADK 74

Query: 83 LHIKVKN 90
          LHIKVKN
Sbjct: 75 LHIKVKN 81

[Close]

BLAST of CmoCh17G005090 vs. ExPASy TrEMBL
Match: A0A6J1JVQ4 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488292 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.7e-26
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 23 LKVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADK 82
          L+VSSATES KEAKYEAKFEAKYRLCYEKCEKECLEKGN QSFCEVKCDEDC EKE ADK
Sbjct: 19 LQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQSFCEVKCDEDCDEKEVADK 78

Query: 83 LHIKVKN 90
          LHIKVKN
Sbjct: 79 LHIKVKN 85

[Close]

BLAST of CmoCh17G005090 vs. ExPASy TrEMBL
Match: A0A0A0KCI6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17
Identity = 48/68 (70.59%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 23 LKVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQSFCEVKCDEDCGEKEAAD 82
          L+ S      KE KYE+KF+AKY+ CYE CEKECLE G NGQSFCEVKCDEDCGEKE+AD
Sbjct: 20 LEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSFCEVKCDEDCGEKESAD 79

Query: 83 KLHIKVKN 90
          KLHI   N
Sbjct: 80 KLHINPAN 87

The following BLAST results are available for this feature:

BLAST of CmoCh17G005090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24172	4.3e-08	53.06	Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1	[more]

BLAST of CmoCh17G005090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQ21	6.0e-29	91.67	major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354...	[more]
A0A6J1JXL5	3.0e-28	97.01	major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488756 P...	[more]
A0A6J1JWQ7	3.0e-28	97.01	major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488152 P...	[more]
A0A6J1JVQ4	3.7e-26	92.54	major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488292 P...	[more]
A0A0A0KCI6	2.4e-17	70.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106710 PE=4 SV=1	[more]

BLAST of CmoCh17G005090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	1.10.287.720	Pollen allergen ole e 6	coord: 41..89 e-value: 1.0E-16 score: 62.2
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	111388	Pollen allergen ole e 6	coord: 42..83
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole_e_6	coord: 48..84 e-value: 7.4E-13 score: 48.2
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	MAJOR POLLEN ALLERGEN OLE E 6-LIKE	coord: 20..88
None	No IPR available	PANTHER	PTHR35632:SF5	SUBFAMILY NOT NAMED	coord: 20..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G005090.1	CmoCh17G005090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006720	isoprenoid metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0051213	dioxygenase activity