CmoCh17G005070 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G005070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	major pollen allergen Ole e 6-like
Location	Cmo_Chr17: 4817630 .. 4817962 (+)
RNA-Seq Expression	CmoCh17G005070
Synteny	CmoCh17G005070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGGTGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGCGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAATGCGAGAAGGAATGCCTTGAAAAGGGCAATGGCCAAAGCTTCTGCGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGGTATGTTCTCTTCCTTTTTAAATCATTTTTATTTTCTCTTAATAATTAATTAATTCATTCATTATTGTATTTGTATTTGTTTCACAGATAAGCTACACATCAAGGTGAAGAACTGA

mRNA sequence

ATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGGTGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGCGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAATGCGAGAAGGAATGCCTTGAAAAGGGCAATGGCCAAAGCTTCTGCGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGATAAGCTACACATCAAGGTGAAGAACTGA

Coding sequence (CDS)

ATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGGTGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGCGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAATGCGAGAAGGAATGCCTTGAAAAGGGCAATGGCCAAAGCTTCTGCGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGATAAGCTACACATCAAGGTGAAGAACTGA

Protein sequence

MIAVLLVCIVVVAALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADKLHIKVKN

Homology

[Close]

BLAST of CmoCh17G005070 vs. ExPASy Swiss-Prot
Match: O24172 (Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-08
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 34 EAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAADKL-HIKVKN 82
          EA+++ CY+ C KEC +KGNG +FCE+KCD DC  K+  +KL + K KN
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKLENYKPKN 50

[Close]

BLAST of CmoCh17G005070 vs. ExPASy TrEMBL
Match: A0A6J1EQ21 (major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MIAVLLVCIVVVAALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEV 60
          MIAVLLVCIVVVAALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEV
Sbjct: 5  MIAVLLVCIVVVAALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEV 64

Query: 61 KCDEDCGEKEAADKLHIKVKN 82
          KCDEDCGEKEAADKLHIKVKN
Sbjct: 65 KCDEDCGEKEAADKLHIKVKN 85

[Close]

BLAST of CmoCh17G005070 vs. ExPASy TrEMBL
Match: A0A6J1JXL5 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488756 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.7e-34
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MIAVLLVCIVVVAALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEV 60
          MIAVLLVCIVV+AALQVSSATES KEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEV
Sbjct: 5  MIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEV 64

Query: 61 KCDEDCGEKEAADKLHIKVKN 82
          KCDEDCGEKEAADKLHIKVKN
Sbjct: 65 KCDEDCGEKEAADKLHIKVKN 85

[Close]

BLAST of CmoCh17G005070 vs. ExPASy TrEMBL
Match: A0A6J1JWQ7 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488152 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.7e-34
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MIAVLLVCIVVVAALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEV 60
          MIAVLLVCIVV+AALQVSSATES KEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEV
Sbjct: 1  MIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEV 60

Query: 61 KCDEDCGEKEAADKLHIKVKN 82
          KCDEDCGEKEAADKLHIKVKN
Sbjct: 61 KCDEDCGEKEAADKLHIKVKN 81

[Close]

BLAST of CmoCh17G005070 vs. ExPASy TrEMBL
Match: A0A6J1JVQ4 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488292 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.4e-31
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MIAVLLVCIVVVAALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEV 60
          +IAVLLVCIVV+AALQVSSATES KEAKYEAKFEAKYRLCYEKCEKECLEKGN QSFCEV
Sbjct: 5  IIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQSFCEV 64

Query: 61 KCDEDCGEKEAADKLHIKVKN 82
          KCDEDC EKE ADKLHIKVKN
Sbjct: 65 KCDEDCDEKEVADKLHIKVKN 85

[Close]

BLAST of CmoCh17G005070 vs. ExPASy TrEMBL
Match: A0A0A0KCI6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MIAVLLVCIVVVAALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQSFCE 60
          M+ VLL+CIVV+AAL+ S      KE KYE+KF+AKY+ CYE CEKECLE G NGQSFCE
Sbjct: 6  MMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSFCE 65

Query: 61 VKCDEDCGEKEAADKLHIKVKN 82
          VKCDEDCGEKE+ADKLHI   N
Sbjct: 66 VKCDEDCGEKESADKLHINPAN 87

The following BLAST results are available for this feature:

BLAST of CmoCh17G005070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24172	4.0e-08	53.06	Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1	[more]

BLAST of CmoCh17G005070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQ21	1.5e-34	100.00	major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354...	[more]
A0A6J1JXL5	9.7e-34	97.53	major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488756 P...	[more]
A0A6J1JWQ7	9.7e-34	97.53	major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488152 P...	[more]
A0A6J1JVQ4	3.4e-31	92.59	major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488292 P...	[more]
A0A0A0KCI6	1.5e-21	70.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106710 PE=4 SV=1	[more]

BLAST of CmoCh17G005070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	1.10.287.720	Pollen allergen ole e 6	coord: 33..81 e-value: 7.9E-17 score: 62.5
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	111388	Pollen allergen ole e 6	coord: 34..75
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole_e_6	coord: 40..76 e-value: 5.9E-13 score: 48.5
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	MAJOR POLLEN ALLERGEN OLE E 6-LIKE	coord: 1..80
None	No IPR available	PANTHER	PTHR35632:SF5	SUBFAMILY NOT NAMED	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G005070.1	CmoCh17G005070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006720	isoprenoid metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0051213	dioxygenase activity