|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTGGACTGCCTTCTCGACCTCACCGAGCCCGTCCTGCTGCCGCCTCCCGCTGCCAACCAGGCCGCCTCCGACGCCTCCGGTCTCCGCCATCTACGCGAAGGCTCAGCCACCCGAAACCGACGCCGATAACGCCACACCAAACAACAGTACCAGCATCAAAAGCTTCGGCCACAAAATTCTCTCGGCCGCGAACTCCACAAATCCCAAATCCCGCAGCCCCATCCGAAAACAGGAATCGCAATTGGAGACTGCCCAAATTAGTGGGTTAGATGTTCTGAGGGCACTGCAGAAGGCGGCCGCCGTGAAGGAGAAAAACAGAACCCGACAAGGGAAAGAACAGAAGAAAGACGGGCCGCCTCCCACCGAAGGGAGCGGCTCTGATAACTCTGAGATGAACCGTAGAGTGAGGCCTCTGAGAATCAAGAACGATTGGGGCTTGAGACTTACTGAGTTGGAGAAACGCCTTCAGGAGATCTCTGAAACGGTTTGA mRNA sequence ATGTGGACTGCCTTCTCGACCTCACCGAGCCCGTCCTGCTGCCGCCTCCCGCTGCCAACCAGGCCGCCTCCGACGCCTCCGGTCTCCGCCATCTACGCGAAGGCTCAGCCACCCGAAACCGACGCCGATAACGCCACACCAAACAACAGTACCAGCATCAAAAGCTTCGGCCACAAAATTCTCTCGGCCGCGAACTCCACAAATCCCAAATCCCGCAGCCCCATCCGAAAACAGGAATCGCAATTGGAGACTGCCCAAATTAGTGGGTTAGATGTTCTGAGGGCACTGCAGAAGGCGGCCGCCGTGAAGGAGAAAAACAGAACCCGACAAGGGAAAGAACAGAAGAAAGACGGGCCGCCTCCCACCGAAGGGAGCGGCTCTGATAACTCTGAGATGAACCGTAGAGTGAGGCCTCTGAGAATCAAGAACGATTGGGGCTTGAGACTTACTGAGTTGGAGAAACGCCTTCAGGAGATCTCTGAAACGGTTTGA Coding sequence (CDS) ATGTGGACTGCCTTCTCGACCTCACCGAGCCCGTCCTGCTGCCGCCTCCCGCTGCCAACCAGGCCGCCTCCGACGCCTCCGGTCTCCGCCATCTACGCGAAGGCTCAGCCACCCGAAACCGACGCCGATAACGCCACACCAAACAACAGTACCAGCATCAAAAGCTTCGGCCACAAAATTCTCTCGGCCGCGAACTCCACAAATCCCAAATCCCGCAGCCCCATCCGAAAACAGGAATCGCAATTGGAGACTGCCCAAATTAGTGGGTTAGATGTTCTGAGGGCACTGCAGAAGGCGGCCGCCGTGAAGGAGAAAAACAGAACCCGACAAGGGAAAGAACAGAAGAAAGACGGGCCGCCTCCCACCGAAGGGAGCGGCTCTGATAACTCTGAGATGAACCGTAGAGTGAGGCCTCTGAGAATCAAGAACGATTGGGGCTTGAGACTTACTGAGTTGGAGAAACGCCTTCAGGAGATCTCTGAAACGGTTTGA Protein sequence MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSTSIKSFGHKILSAANSTNPKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGPPPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV
Homology
BLAST of CmoCh17G004770 vs. ExPASy TrEMBL
Match: A0A6J1H4Y8 (uncharacterized protein LOC111460438 OS=Cucurbita moschata OX=3662 GN=LOC111460438 PE=4 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 3.3e-81 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query: 1 MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSTSIKSFGHKI 60
MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSTSIKSFGHKI
Sbjct: 1 MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSTSIKSFGHKI 60
Query: 61 LSAANSTNPKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGPP 120
LSAANSTNPKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGPP
Sbjct: 61 LSAANSTNPKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGPP 120
Query: 121 PTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 164
PTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV
Sbjct: 121 PTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163
BLAST of CmoCh17G004770 vs. ExPASy TrEMBL
Match: A0A6J1L2U1 (uncharacterized protein LOC111499329 OS=Cucurbita maxima OX=3661 GN=LOC111499329 PE=4 SV=1) HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76 Identity = 156/163 (95.71%), Postives = 159/163 (97.55%), Query Frame = 0
Query: 1 MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSTSIKSFGHKI 60
MW AFSTSPSPSCCRLPLPTRP PTPPVSAIYAKAQPP+TDADNATPNNS+SIKSFGHKI
Sbjct: 1 MWAAFSTSPSPSCCRLPLPTRPLPTPPVSAIYAKAQPPDTDADNATPNNSSSIKSFGHKI 60
Query: 61 LSAANSTNPKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGPP 120
LSAA STNPKSRSPIRKQESQLETA+ISGLDVLRALQKAAAVKEKNRTRQ KEQKKDGPP
Sbjct: 61 LSAAKSTNPKSRSPIRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKKDGPP 120
Query: 121 PTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 164
PTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV
Sbjct: 121 PTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163
BLAST of CmoCh17G004770 vs. ExPASy TrEMBL
Match: A0A5D3DMB8 (Chaperone ClpB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002990 PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 3.3e-41 Identity = 107/164 (65.24%), Postives = 122/164 (74.39%), Query Frame = 0
Query: 1 MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSTSIKSFGHKI 60
MW A STSPSPS RLP+ T PPP PVS YAK+ PP+ DA+N PNNS +IKSFGHKI
Sbjct: 1 MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKPNNSGTIKSFGHKI 60
Query: 61 LSAANSTNPKS-RSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGP 120
LSA NS P+S K ESQ E QISG DVLRALQKAAAVKEKNRT+Q KE+KK
Sbjct: 61 LSAVNSPTPQSLNQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKKK--- 120
Query: 121 PPTEGSGSDN--SEMNRRVRPLRIKNDWGLRLTELEKRLQEISE 162
EG+ +++ SEMN RVRPL+IK DWGLRLT+LEKRL E+SE
Sbjct: 121 KKKEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161
BLAST of CmoCh17G004770 vs. ExPASy TrEMBL
Match: A0A1S3CAW4 (uncharacterized protein LOC103498786 OS=Cucumis melo OX=3656 GN=LOC103498786 PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 3.3e-41 Identity = 107/164 (65.24%), Postives = 122/164 (74.39%), Query Frame = 0
Query: 1 MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSTSIKSFGHKI 60
MW A STSPSPS RLP+ T PPP PVS YAK+ PP+ DA+N PNNS +IKSFGHKI
Sbjct: 1 MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKPNNSGTIKSFGHKI 60
Query: 61 LSAANSTNPKS-RSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGP 120
LSA NS P+S K ESQ E QISG DVLRALQKAAAVKEKNRT+Q KE+KK
Sbjct: 61 LSAVNSPTPQSLNQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKKK--- 120
Query: 121 PPTEGSGSDN--SEMNRRVRPLRIKNDWGLRLTELEKRLQEISE 162
EG+ +++ SEMN RVRPL+IK DWGLRLT+LEKRL E+SE
Sbjct: 121 KKKEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161
BLAST of CmoCh17G004770 vs. ExPASy TrEMBL
Match: A0A0A0KCJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107890 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 9.0e-39 Identity = 105/166 (63.25%), Postives = 119/166 (71.69%), Query Frame = 0
Query: 1 MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSTSIKSFGHKI 60
MW A STSP PSC RL + T PPTPP+S A +QP TDA+N PNNS+SIK FGHKI
Sbjct: 1 MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60
Query: 61 LSAANSTNPKS-RSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGP 120
LSA NS PKS K ES E AQISG DVLRALQKAAAVKEK RT+Q KE+KK
Sbjct: 61 LSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKK--- 120
Query: 121 PPTEGSGSDN--SEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 164
EG+ +++ SEMN RVRPL+I DWGLRLT+LEKRL EIS+ V
Sbjct: 121 -KKEGAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 162
BLAST of CmoCh17G004770 vs. TAIR 10
Match: AT2G46735.1 (unknown protein; Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 54.3 bits (129), Expect = 1.1e-07 Identity = 56/160 (35.00%), Postives = 75/160 (46.88%), Query Frame = 0
Query: 18 LPTRPPPTPPVSAIYAKAQPPETDADN---------ATPNNSTSIKSFGHKILSAANSTN 77
+P + P V+ A +QPP + D S S+ G +IL +N
Sbjct: 9 MPVQFHMRPTVATSVAYSQPPPHNYDGIHRRFINVPTKSQTSESVGGLGQQILLRTVDSN 68
Query: 78 PKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGPPPTEGSGS- 137
P R PI K+ +ISG DVL A+Q+A A ++ RT GK++ K+ E S S
Sbjct: 69 P--RKPIPKE------TEISGSDVLWAIQRATA--QRKRTNAGKKKTKNRLSGVELSSSA 128
Query: 138 -----DNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISET 163
DN V PLRIK+DWG RL E EK L+E T
Sbjct: 129 GEPTGDNGVDYSNVTPLRIKSDWGHRLEEFEKLLKEFQNT 158
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1H4Y8 | 3.3e-81 | 100.00 | uncharacterized protein LOC111460438 OS=Cucurbita moschata OX=3662 GN=LOC1114604... | [more] |
| A0A6J1L2U1 | 1.9e-76 | 95.71 | uncharacterized protein LOC111499329 OS=Cucurbita maxima OX=3661 GN=LOC111499329... | [more] |
| A0A5D3DMB8 | 3.3e-41 | 65.24 | Chaperone ClpB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00299... | [more] |
| A0A1S3CAW4 | 3.3e-41 | 65.24 | uncharacterized protein LOC103498786 OS=Cucumis melo OX=3656 GN=LOC103498786 PE=... | [more] |
| A0A0A0KCJ8 | 9.0e-39 | 63.25 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107890 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G46735.1 | 1.1e-07 | 35.00 | unknown protein; Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bact... | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 142..163 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..82 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 41..82 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 15..31 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 100..144 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 100..119 |
| None | No IPR available | PANTHER | PTHR37728 | BNAA04G26730D PROTEIN | coord: 1..162 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
