CmoCh17G004650 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G004650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cyclin
Location	Cmo_Chr17: 3302518 .. 3304006 (+)
RNA-Seq Expression	CmoCh17G004650
Synteny	CmoCh17G004650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTTTGTACTTTGTCGCTCTAAACAACAGGCACCCATATCTTATTTCTTGATCTTCGTCCTTTTCCCTCACCTTCCACTCACCTTCCAAAATCCCCATATAAAATCCCCATTTCTTCCTTCCAACCAATACCCATTAACCCCAATGGCCCTTCCAATTTCCCCACGAAGCCTTCGCTCCGATGTGTACTCCTACTCCTACGAGGAGCGCTCGGGTACCCCTTTGGTCATCGGCGTTGTTGCGTCCTTGATCGAGAGGAGCATGGCCAGGAACCATCGGATTGCCAAGAATTGCATGTCCATGCCTAGAGATTCCAGGTCCAGGGCCCTTGTTTTTGAGTGCCGTGAGGCTCCCGACATGTCCATTCAGTGTTATTTGGAGAGGATTTTTCGGTATACTAAAGTTGGTCCTTCTGTTTACGTTGTTGCTTATGTTTATATTGATCGGTTTTGCCAACAAAATCCTGGGTTTCGGATCAATCTTAGGAATGTTCATCGCCTTCTTATCACTACTGTCATGGTCGCTTCTAAATATGTCGAGGATATGTAAGTTTTGTTTTTCTCTCTCTCTTTTTAAAGCCTTGGATTGATTTTGGGTTGTAGAAGTAAAAGGTTTTTGTGTTAGCAAGTCTCGAAAAGTTACTTCTTTGATGATTAAGGTATCGGTGACGATCTCGAGTTTCCAAATACATTGTCATTCCATTCGGGTCGAGACCCACGAGAGCTTTTACCTATATTTTACCATTTCTCTCATTCCTTCAACGAGTGAGTCCTCGAATAAACCTGTTCAACTTTCCAACTGAGTCTCAAGTTTCGAAACACATTGTCAATCCATTCAAGTTGAGACCCACCAAAGCTTTTACCTATATTTGACCATTTCTCCCTTTTCTTTAACCAACGAGTCCTCGAATAAACTTGTTCCACGTTCTAATATTGAGTTGACCGAACAAAGGATCCCACCGACCTGATAAATCACTTCATATCGACAGGGGAGAAATTCCCGGGCTTCCCTTTGATTAAGTTGATAATGTTTATTACCTTTTGTTGATAGGTGTTCTTCTAGCTCAATCTCGATTTAACGTTACTTTTGAAAACAGGAACTATCGAAATTCGTACTATGCAAGAGTCGGGGGATTGACAACAAAGGAGATGAATCAACTGGAGCTGGATTTTTTGTTCATGATGGGATTCAAATGCCATGTAAATCTAAGTGTGTTTGAGAGTTATTGTTGCCATTTGGAGAGAGAAGTAAGCATTGGAGGAGGATACCATATAGAGAGGACATTAAGATGTGCTGAAGAGTTGAAGTCTAAACAAAGCCAACAAGCCTCATTTAATCAAATGGCTCGTATTACATTGTAAAGATCAAAGATGCTGCCTTTTTTGTATAGTTTATATGATAATATATATTAAAATGTGTTTGGTTCTTTTGAATCATTGTTTCATTTGCCGACACTTGCTTAATATATACTCATGTAATATAAAGGAC

mRNA sequence

TTCCTTTGTACTTTGTCGCTCTAAACAACAGGCACCCATATCTTATTTCTTGATCTTCGTCCTTTTCCCTCACCTTCCACTCACCTTCCAAAATCCCCATATAAAATCCCCATTTCTTCCTTCCAACCAATACCCATTAACCCCAATGGCCCTTCCAATTTCCCCACGAAGCCTTCGCTCCGATGTGTACTCCTACTCCTACGAGGAGCGCTCGGGTACCCCTTTGGTCATCGGCGTTGTTGCGTCCTTGATCGAGAGGAGCATGGCCAGGAACCATCGGATTGCCAAGAATTGCATGTCCATGCCTAGAGATTCCAGGTCCAGGGCCCTTGTTTTTGAGTGCCGTGAGGCTCCCGACATGTCCATTCAGTGTTATTTGGAGAGGATTTTTCGGTATACTAAAGTTGGTCCTTCTGTTTACGTTGTTGCTTATGTTTATATTGATCGGTTTTGCCAACAAAATCCTGGGTTTCGGATCAATCTTAGGAATGTTCATCGCCTTCTTATCACTACTGTCATGGTCGCTTCTAAATATGTCGAGGATATGAACTATCGAAATTCGTACTATGCAAGAGTCGGGGGATTGACAACAAAGGAGATGAATCAACTGGAGCTGGATTTTTTGTTCATGATGGGATTCAAATGCCATGTAAATCTAAGTGTGTTTGAGAGTTATTGTTGCCATTTGGAGAGAGAAGTAAGCATTGGAGGAGGATACCATATAGAGAGGACATTAAGATGTGCTGAAGAGTTGAAGTCTAAACAAAGCCAACAAGCCTCATTTAATCAAATGGCTCGTATTACATTGTAAAGATCAAAGATGCTGCCTTTTTTGTATAGTTTATATGATAATATATATTAAAATGTGTTTGGTTCTTTTGAATCATTGTTTCATTTGCCGACACTTGCTTAATATATACTCATGTAATATAAAGGAC

Coding sequence (CDS)

ATGGCCCTTCCAATTTCCCCACGAAGCCTTCGCTCCGATGTGTACTCCTACTCCTACGAGGAGCGCTCGGGTACCCCTTTGGTCATCGGCGTTGTTGCGTCCTTGATCGAGAGGAGCATGGCCAGGAACCATCGGATTGCCAAGAATTGCATGTCCATGCCTAGAGATTCCAGGTCCAGGGCCCTTGTTTTTGAGTGCCGTGAGGCTCCCGACATGTCCATTCAGTGTTATTTGGAGAGGATTTTTCGGTATACTAAAGTTGGTCCTTCTGTTTACGTTGTTGCTTATGTTTATATTGATCGGTTTTGCCAACAAAATCCTGGGTTTCGGATCAATCTTAGGAATGTTCATCGCCTTCTTATCACTACTGTCATGGTCGCTTCTAAATATGTCGAGGATATGAACTATCGAAATTCGTACTATGCAAGAGTCGGGGGATTGACAACAAAGGAGATGAATCAACTGGAGCTGGATTTTTTGTTCATGATGGGATTCAAATGCCATGTAAATCTAAGTGTGTTTGAGAGTTATTGTTGCCATTTGGAGAGAGAAGTAAGCATTGGAGGAGGATACCATATAGAGAGGACATTAAGATGTGCTGAAGAGTTGAAGTCTAAACAAAGCCAACAAGCCTCATTTAATCAAATGGCTCGTATTACATTGTAA

Protein sequence

MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCHLEREVSIGGGYHIERTLRCAEELKSKQSQQASFNQMARITL

Homology

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BLAST of CmoCh17G004650 vs. ExPASy Swiss-Prot
Match: Q9M205 (Cyclin-U2-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU2-2 PE=1 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.0e-82
Identity = 149/226 (65.93%), Postives = 183/226 (80.97%), Query Frame = 0


Query: 2   ALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRA 61
           +L ISPR LRSD+YSYSY+  S TPLVI V++SLI+R++ RN RI++  +     +  + 
Sbjct: 6   SLTISPRKLRSDLYSYSYQNNSKTPLVISVLSSLIDRTLTRNERISRRALP-SSGAGGKT 65

Query: 62  LVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLI 121
            +F+CRE PDM+IQ YL RIFRYTK GPSVYVVAYVYIDRFCQ NPGFRI+L NVHRLLI
Sbjct: 66  QIFDCREIPDMTIQSYLGRIFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLI 125

Query: 122 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCHL 181
           TT+M+ASKYVED+NYRNSY+A+VGGL T+++N+LEL+FLF+MGFK HVN+SVFESYCCHL
Sbjct: 126 TTIMIASKYVEDLNYRNSYFAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESYCCHL 185

Query: 182 EREVSIGGGYHIERTLRCAEELKSKQ------SQQASFNQMARITL 222
           EREVS GGGY IE+ LRCAEE+KS+Q            +Q+ARI L
Sbjct: 186 EREVSFGGGYQIEKALRCAEEIKSRQMIIQDPKHHHHHHQLARILL 230

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BLAST of CmoCh17G004650 vs. ExPASy Swiss-Prot
Match: Q9SHD3 (Cyclin-U2-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU2-1 PE=1 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 5.1e-82
Identity = 149/210 (70.95%), Postives = 178/210 (84.76%), Query Frame = 0


Query: 2   ALPISPRSLRSDVYSYSYEERSGT-PLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 61
           +L ISPR LRSD+YSYSY++ S T PLVI V++SLIER++ARN RI+++          +
Sbjct: 3   SLAISPRKLRSDLYSYSYQDDSNTVPLVISVLSSLIERTLARNERISRSYGGF-----GK 62

Query: 62  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 121
             VF+CRE PDM+IQ YLERIFRYTK GPSVYVVAYVYIDRFCQ N GFRI+L NVHRLL
Sbjct: 63  TRVFDCREIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLL 122

Query: 122 ITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCH 181
           ITT+M+ASKYVEDMNY+NSY+A+VGGL T+++N LEL+FLF+MGFK HVN+SVFESYCCH
Sbjct: 123 ITTIMIASKYVEDMNYKNSYFAKVGGLETEDLNNLELEFLFLMGFKLHVNVSVFESYCCH 182

Query: 182 LEREVSIGGGYHIERTLRCAEELKSKQSQQ 211
           LEREVSIGGGY IE+ LRCAEE+KS+Q  Q
Sbjct: 183 LEREVSIGGGYQIEKALRCAEEIKSRQIVQ 207

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BLAST of CmoCh17G004650 vs. ExPASy Swiss-Prot
Match: Q7FAT5 (Cyclin-P2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP2-1 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 9.0e-47
Identity = 102/211 (48.34%), Postives = 138/211 (65.40%), Query Frame = 0


Query: 10  LRSDVYSYSYEERS----GTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFE 69
           L SDVY+    +       TP+V+ V+ASL+ER +ARN R      +   ++  RA  F+
Sbjct: 6   LASDVYALPCGDDGTTALSTPVVVSVLASLLERHIARNER--DQAAAADGEAARRARAFD 65

Query: 70  CREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVM 129
                DMS+  +LER  RY  V P VYVVAY Y+DR  ++  G R+   N  RLL T ++
Sbjct: 66  SGTVLDMSLHAFLERFSRYANVSPQVYVVAYAYLDRL-RRGDGVRVVSANAQRLLTTAIL 125

Query: 130 VASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCHLEREV 189
           VASK+VED NY+NSY+A VGGLT  E++ LELDFLF+M F+ +V++SVF+SYC HLEREV
Sbjct: 126 VASKFVEDRNYKNSYFAAVGGLTAAELSSLELDFLFLMQFRLNVSVSVFQSYCRHLEREV 185

Query: 190 SIGGGYHIERTLR----CAEELKSKQSQQAS 213
           S GGGY +ER L+    C+ E +++Q Q AS
Sbjct: 186 SYGGGYQVERCLKKALVCSGEAQAQQRQAAS 213

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BLAST of CmoCh17G004650 vs. ExPASy Swiss-Prot
Match: Q9LJ45 (Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-35
Identity = 74/190 (38.95%), Postives = 121/190 (63.68%), Query Frame = 0


Query: 23  SGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFECREAPDMSIQCYLERIF 82
           + TP V+ +++ ++E+ +ARN  +AK      +   +    F    AP +SI  YLERI+
Sbjct: 22  AATPRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEA----FHGVRAPSISIAKYLERIY 81

Query: 83  RYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVMVASKYVEDMNYRNSYYA 142
           +YTK  P+ +VV YVYIDR   ++PG  +   NVHRLL+T VM+A+K ++D++Y N +YA
Sbjct: 82  KYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFYA 141

Query: 143 RVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCHLEREVSIGGGYHIERTLRCAEE 202
           RVGG++  ++N++EL+ LF++ F+  V+  VFESYC HLE+E+ +       + ++  +E
Sbjct: 142 RVGGVSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEMQLNDAVSSLKDIQPMQE 201

Query: 203 LKSKQSQQAS 213
             S  S  +S
Sbjct: 202 SLSPASTLSS 207

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BLAST of CmoCh17G004650 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-34
Identity = 74/160 (46.25%), Postives = 112/160 (70.00%), Query Frame = 0


Query: 28  VIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFECREAPDMSIQCYLERIFRYTKV 87
           +I  ++SL+ER +A ++ + +   +  +    R  VF     P ++IQ YLERIF+Y   
Sbjct: 13  LIAFLSSLLER-VAESNDLTRRVATQSQ----RVSVFHGLSRPTITIQSYLERIFKYANC 72

Query: 88  GPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVMVASKYVEDMNYRNSYYARVGGL 147
            PS +VVAYVY+DRF  + P   IN  NVHRLLIT+VMVA+K+++D+ Y N+YYA+VGG+
Sbjct: 73  SPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGI 132

Query: 148 TTKEMNQLELDFLFMMGFKCHVNLSVFESYCCHLEREVSI 188
           +TKEMN LELDFLF +GF+ +V  + F +Y  +L++E+++
Sbjct: 133 STKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTL 167

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BLAST of CmoCh17G004650 vs. ExPASy TrEMBL
Match: A0A6J1L2S6 (Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111499317 PE=3 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.3e-120
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 0


Query: 1   MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 60
           MALPISPRSLRSDVYSYSYEE SGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR
Sbjct: 1   MALPISPRSLRSDVYSYSYEEGSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 60

Query: 61  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 120
           ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRI+LRNVHRLL
Sbjct: 61  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRISLRNVHRLL 120

Query: 121 ITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCH 180
           ITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCH
Sbjct: 121 ITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCH 180

Query: 181 LEREVSIGGGYHIERTLRCAEELKSKQSQQASFNQMARITL 222
           LEREVSIGGGYHIERTLRCAEELKSKQSQQASFNQMARITL
Sbjct: 181 LEREVSIGGGYHIERTLRCAEELKSKQSQQASFNQMARITL 221

[Close]

BLAST of CmoCh17G004650 vs. ExPASy TrEMBL
Match: A0A0A0KAQ9 (Cyclin OS=Cucumis sativus OX=3659 GN=Csa_6G108560 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 183/224 (81.70%), Postives = 197/224 (87.95%), Query Frame = 0


Query: 1   MALPISPRSLRSDVYSYSY-EERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRS 60
           M +PISPR LRSD+YSYS+ E+ S  PLVI VVASLIER+MARNHRIA+N       S  
Sbjct: 8   MIIPISPRKLRSDLYSYSHSEDYSKIPLVISVVASLIERNMARNHRIARN-----YTSSK 67

Query: 61  RALVFECR-EAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHR 120
            A+VF+CR EAPDMSIQCYLERIFRYTK  P VYVVAYVYIDRFCQQNP FRI LRNVHR
Sbjct: 68  GAVVFDCRDEAPDMSIQCYLERIFRYTKAAPCVYVVAYVYIDRFCQQNPSFRITLRNVHR 127

Query: 121 LLITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYC 180
           LLITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLE+DFLF+M FKCHVNLSVFESYC
Sbjct: 128 LLITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLEMDFLFLMRFKCHVNLSVFESYC 187

Query: 181 CHLEREVSIGGGYHIERTLRCAEELKSKQSQQASF-NQMARITL 222
           CHLEREVSIGGGYHIERTLRCAEELKSKQ+QQ ++ NQ+ARI L
Sbjct: 188 CHLEREVSIGGGYHIERTLRCAEELKSKQNQQTTYINQIARIML 226

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BLAST of CmoCh17G004650 vs. ExPASy TrEMBL
Match: A0A1S3CAV0 (Cyclin OS=Cucumis melo OX=3656 GN=LOC103498771 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 184/222 (82.88%), Postives = 197/222 (88.74%), Query Frame = 0


Query: 3   LPISPRSLRSDVYSYSY-EERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRA 62
           +PISPR LRSD+YSYSY E+ S  PLVI VVASLIER+MARNHRIA+N M     S   A
Sbjct: 10  IPISPRKLRSDLYSYSYSEDYSKIPLVISVVASLIERNMARNHRIARNYM-----SSKGA 69

Query: 63  LVFECR-EAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 122
           +VF+CR EAPDMSIQ YLERIFRYTK  PSVYVVAYVYIDRFCQQNP FRI LRNVHRLL
Sbjct: 70  VVFDCRDEAPDMSIQRYLERIFRYTKAAPSVYVVAYVYIDRFCQQNPSFRITLRNVHRLL 129

Query: 123 ITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCH 182
           ITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLE+DFLF+M FKCHVNLSVFESYCCH
Sbjct: 130 ITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLEMDFLFLMKFKCHVNLSVFESYCCH 189

Query: 183 LEREVSIGGGYHIERTLRCAEELKSKQSQQASF-NQMARITL 222
           LEREVSIGGGYHIERTLRCAEELKSKQ+QQ ++ NQ+ARI L
Sbjct: 190 LEREVSIGGGYHIERTLRCAEELKSKQNQQTTYINQIARIML 226

[Close]

BLAST of CmoCh17G004650 vs. ExPASy TrEMBL
Match: A0A6J1A0Y6 (Cyclin OS=Herrania umbratica OX=108875 GN=LOC110414053 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 5.1e-93
Identity = 171/221 (77.38%), Postives = 194/221 (87.78%), Query Frame = 0


Query: 2   ALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNC-MSMPRDSRSR 61
           +L ISPR LRSD+Y YSY+  + TPLVI V+ASLIER+M RN RIAKNC  S+ +D RSR
Sbjct: 6   SLTISPRKLRSDLYCYSYQNDANTPLVISVLASLIERTMTRNERIAKNCKWSLTKDYRSR 65

Query: 62  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 121
             VF+C E PDM+IQ YLERIFRYTK GPSVYVVAYVYIDRFCQ NPGFRIN RNVHRLL
Sbjct: 66  --VFDCHETPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRINARNVHRLL 125

Query: 122 ITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCH 181
           ITT+MVASKYVEDMNYRNSY+ARVGGLTT E+N LEL+FLF+MGFK HVN+SVFESYCCH
Sbjct: 126 ITTIMVASKYVEDMNYRNSYFARVGGLTTNELNNLELEFLFLMGFKLHVNVSVFESYCCH 185

Query: 182 LEREVSIGGGYHIERTLRCAEELKSKQSQQASFNQMARITL 222
           LEREVSIGGGYHIERTLRCAEE+KS+Q+++  +NQ+ARI L
Sbjct: 186 LEREVSIGGGYHIERTLRCAEEIKSRQNEERRYNQIARIML 224

[Close]

BLAST of CmoCh17G004650 vs. ExPASy TrEMBL
Match: A0A061DUC4 (Cyclin OS=Theobroma cacao OX=3641 GN=TCM_005606 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 5.1e-93
Identity = 171/221 (77.38%), Postives = 194/221 (87.78%), Query Frame = 0


Query: 2   ALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNC-MSMPRDSRSR 61
           +L ISPR LRSD+Y YSY+  + TPLVI V+ASLIER+M RN RIAKNC  S+ +D RSR
Sbjct: 6   SLTISPRKLRSDLYCYSYQNDANTPLVISVLASLIERTMTRNERIAKNCKWSLTKDYRSR 65

Query: 62  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 121
             VF+C E PDM+IQ YLERIFRYTK GPSVYVVAYVYIDRFCQ NPGFRIN RNVHRLL
Sbjct: 66  --VFDCHETPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRINARNVHRLL 125

Query: 122 ITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCH 181
           ITT+MVASKYVEDMNYRNSY+ARVGGLTT E+N LEL+FLF+MGFK HVN+SVFESYCCH
Sbjct: 126 ITTIMVASKYVEDMNYRNSYFARVGGLTTNELNNLELEFLFLMGFKLHVNVSVFESYCCH 185

Query: 182 LEREVSIGGGYHIERTLRCAEELKSKQSQQASFNQMARITL 222
           LEREVSIGGGYHIERTLRCAEE+KS+Q+++  +NQ+ARI L
Sbjct: 186 LEREVSIGGGYHIERTLRCAEEIKSRQNEERRYNQIARIML 224

[Close]

BLAST of CmoCh17G004650 vs. TAIR 10
Match: AT3G60550.1 (cyclin p3;2 )

HSP 1 Score: 307.8 bits (787), Expect = 7.2e-84
Identity = 149/226 (65.93%), Postives = 183/226 (80.97%), Query Frame = 0


Query: 2   ALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRA 61
           +L ISPR LRSD+YSYSY+  S TPLVI V++SLI+R++ RN RI++  +     +  + 
Sbjct: 6   SLTISPRKLRSDLYSYSYQNNSKTPLVISVLSSLIDRTLTRNERISRRALP-SSGAGGKT 65

Query: 62  LVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLI 121
            +F+CRE PDM+IQ YL RIFRYTK GPSVYVVAYVYIDRFCQ NPGFRI+L NVHRLLI
Sbjct: 66  QIFDCREIPDMTIQSYLGRIFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLI 125

Query: 122 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCHL 181
           TT+M+ASKYVED+NYRNSY+A+VGGL T+++N+LEL+FLF+MGFK HVN+SVFESYCCHL
Sbjct: 126 TTIMIASKYVEDLNYRNSYFAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESYCCHL 185

Query: 182 EREVSIGGGYHIERTLRCAEELKSKQ------SQQASFNQMARITL 222
           EREVS GGGY IE+ LRCAEE+KS+Q            +Q+ARI L
Sbjct: 186 EREVSFGGGYQIEKALRCAEEIKSRQMIIQDPKHHHHHHQLARILL 230

[Close]

BLAST of CmoCh17G004650 vs. TAIR 10
Match: AT2G45080.1 (cyclin p3;1 )

HSP 1 Score: 305.4 bits (781), Expect = 3.6e-83
Identity = 149/210 (70.95%), Postives = 178/210 (84.76%), Query Frame = 0


Query: 2   ALPISPRSLRSDVYSYSYEERSGT-PLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 61
           +L ISPR LRSD+YSYSY++ S T PLVI V++SLIER++ARN RI+++          +
Sbjct: 3   SLAISPRKLRSDLYSYSYQDDSNTVPLVISVLSSLIERTLARNERISRSYGGF-----GK 62

Query: 62  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 121
             VF+CRE PDM+IQ YLERIFRYTK GPSVYVVAYVYIDRFCQ N GFRI+L NVHRLL
Sbjct: 63  TRVFDCREIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLL 122

Query: 122 ITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCH 181
           ITT+M+ASKYVEDMNY+NSY+A+VGGL T+++N LEL+FLF+MGFK HVN+SVFESYCCH
Sbjct: 123 ITTIMIASKYVEDMNYKNSYFAKVGGLETEDLNNLELEFLFLMGFKLHVNVSVFESYCCH 182

Query: 182 LEREVSIGGGYHIERTLRCAEELKSKQSQQ 211
           LEREVSIGGGY IE+ LRCAEE+KS+Q  Q
Sbjct: 183 LEREVSIGGGYQIEKALRCAEEIKSRQIVQ 207

[Close]

BLAST of CmoCh17G004650 vs. TAIR 10
Match: AT3G21870.1 (cyclin p2;1 )

HSP 1 Score: 151.4 bits (381), Expect = 8.7e-37
Identity = 74/190 (38.95%), Postives = 121/190 (63.68%), Query Frame = 0


Query: 23  SGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFECREAPDMSIQCYLERIF 82
           + TP V+ +++ ++E+ +ARN  +AK      +   +    F    AP +SI  YLERI+
Sbjct: 22  AATPRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEA----FHGVRAPSISIAKYLERIY 81

Query: 83  RYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVMVASKYVEDMNYRNSYYA 142
           +YTK  P+ +VV YVYIDR   ++PG  +   NVHRLL+T VM+A+K ++D++Y N +YA
Sbjct: 82  KYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFYA 141

Query: 143 RVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCHLEREVSIGGGYHIERTLRCAEE 202
           RVGG++  ++N++EL+ LF++ F+  V+  VFESYC HLE+E+ +       + ++  +E
Sbjct: 142 RVGGVSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEMQLNDAVSSLKDIQPMQE 201

Query: 203 LKSKQSQQAS 213
             S  S  +S
Sbjct: 202 SLSPASTLSS 207

[Close]

BLAST of CmoCh17G004650 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 )

HSP 1 Score: 147.9 bits (372), Expect = 9.6e-36
Identity = 74/160 (46.25%), Postives = 112/160 (70.00%), Query Frame = 0


Query: 28  VIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFECREAPDMSIQCYLERIFRYTKV 87
           +I  ++SL+ER +A ++ + +   +  +    R  VF     P ++IQ YLERIF+Y   
Sbjct: 13  LIAFLSSLLER-VAESNDLTRRVATQSQ----RVSVFHGLSRPTITIQSYLERIFKYANC 72

Query: 88  GPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVMVASKYVEDMNYRNSYYARVGGL 147
            PS +VVAYVY+DRF  + P   IN  NVHRLLIT+VMVA+K+++D+ Y N+YYA+VGG+
Sbjct: 73  SPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGI 132

Query: 148 TTKEMNQLELDFLFMMGFKCHVNLSVFESYCCHLEREVSI 188
           +TKEMN LELDFLF +GF+ +V  + F +Y  +L++E+++
Sbjct: 133 STKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTL 167

[Close]

BLAST of CmoCh17G004650 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 )

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-35
Identity = 71/160 (44.38%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 26  PLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFECREAPDMSIQCYLERIFRYT 85
           P VI  ++SL++R    N     + +S P     R   F     P +SI+ Y+ERIF+Y 
Sbjct: 21  PNVITAMSSLLQRVSETN-----DDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYA 80

Query: 86  KVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVMVASKYVEDMNYRNSYYARVG 145
               S Y+VAY+Y+DRF Q+ P   I+  NVHRL+IT+V+V++K+++D+ Y N++YA+VG
Sbjct: 81  DCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVG 140

Query: 146 GLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCHLEREV 186
           G+TT+EMN LELDFLF +GF+ +V +S +  YC  L+RE+
Sbjct: 141 GITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREM 175

The following BLAST results are available for this feature:

BLAST of CmoCh17G004650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M205	1.0e-82	65.93	Cyclin-U2-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU2-2 PE=1 SV=1	[more]
Q9SHD3	5.1e-82	70.95	Cyclin-U2-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU2-1 PE=1 SV=1	[more]
Q7FAT5	9.0e-47	48.34	Cyclin-P2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP2-1 PE=2 SV=1	[more]
Q9LJ45	1.2e-35	38.95	Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1	[more]
O80513	1.4e-34	46.25	Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1	[more]

BLAST of CmoCh17G004650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L2S6	1.3e-120	99.10	Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111499317 PE=3 SV=1	[more]
A0A0A0KAQ9	1.6e-94	81.70	Cyclin OS=Cucumis sativus OX=3659 GN=Csa_6G108560 PE=3 SV=1	[more]
A0A1S3CAV0	1.6e-94	82.88	Cyclin OS=Cucumis melo OX=3656 GN=LOC103498771 PE=3 SV=1	[more]
A0A6J1A0Y6	5.1e-93	77.38	Cyclin OS=Herrania umbratica OX=108875 GN=LOC110414053 PE=3 SV=1	[more]
A0A061DUC4	5.1e-93	77.38	Cyclin OS=Theobroma cacao OX=3641 GN=TCM_005606 PE=3 SV=1	[more]

BLAST of CmoCh17G004650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60550.1	7.2e-84	65.93	cyclin p3;2	[more]
AT2G45080.1	3.6e-83	70.95	cyclin p3;1	[more]
AT3G21870.1	8.7e-37	38.95	cyclin p2;1	[more]
AT2G44740.1	9.6e-36	46.25	cyclin p4;1	[more]
AT5G07450.1	2.8e-35	44.38	cyclin p4;3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.472.10		coord: 17..220 e-value: 1.7E-51 score: 176.8
None	No IPR available	PANTHER	PTHR15615	UNCHARACTERIZED	coord: 4..221
None	No IPR available	PANTHER	PTHR15615:SF105	CYCLIN	coord: 4..221
IPR013922	Cyclin PHO80-like	PFAM	PF08613	Cyclin	coord: 56..166 e-value: 7.0E-32 score: 111.0
IPR012389	Cyclin P/U	PIRSF	PIRSF027110	PREG	coord: 4..220 e-value: 3.2E-69 score: 230.8
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 77..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G004650.1	CmoCh17G004650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
molecular_function	GO:0019901	protein kinase binding