CmoCh17G004580 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G004580
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	agamous-like MADS-box protein AGL62
Location	Cmo_Chr17: 3230566 .. 3231929 (+)
RNA-Seq Expression	CmoCh17G004580
Synteny	CmoCh17G004580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTGAAAGTGGAAACCAGTTCGATGGAGCTGCTTGATCTCAGTAGTGTCGTTGCCGTTTTCGAGAGACTGTAATTCGGGATAGATTTTATGGAAAGCTTTATGGAAAGCTTGAACGACGACGGGGCCATTATCAATGAACAGAGAACAAAAGGAGAATCCGAAAAGAATAACTAGGAGAGTGAAGAAATTCATCGTAGAATTTGCTTTATTAGTGAAGTTTGTAGTGAAAAGAAATAAGAGTATGATTATATTTATAGAGGAAGAAATATAAATTTAGTCTAAAAATAGGAAAAATTGGTTAACATAATCTCACACTTAAATTTTAAAAAGTTTTATTGATGCTCAAAAATCTAAATTAATTTTAAAAAATAGCATTAACGCATTTAAATTTTATTAAAAATGTTTTAATATTAAATTGTCTACCTATATTGACAAATTATCTTTCAGGATATGAATTTTTTTTTTCTTTCTAAAAGCTTGAAATTAAGGTTACTTTTAAAAATTTATAAGCATTTTTTAAACGGATACTAACATGTCGTGAGAATCTTGTAAAGTTTATGGGTCATGAGAATCTTGTTGGCTAGAATTATGAGAAGGTTTGTTTGATTTGTTTGAATCACTGAGAATATTGAAGAACTATAGAGAATTGAATCAAATCGCTTCAATCTGAGATTGAATTAGCTGCTGAGTTTTGCATTACTGGAGTGGGAAGCAAGACATAAACGAGTTATTAGATGGAGACTAGTCACTTTTTTATACCTATGTAAATAACTTAAAAGCGAAAATGTTGTATTTATTGGAGATCTAACGTCCAACCTTTACTACAACGAAAGGATTTCAAAGTCAAAACCCAAAATTGGTCTATTATGATCGAGTTTTCGTATTCTATTATTATTATTATTATTTTATTTTAATTTTGTAACACCAATGTAAATAATTTATCACAATAAATAGCTGACTCACTTTAATTTTACTTATATTAATTACCGAAACTAAATAAAACAAAATTATTAATTTCACGAAATTTTTTTAGAAAACTCCTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAGCAGCAAACTAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGCCGGTGAGCTTTCTGTGCTATGCGGAGCAGAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGGTTTTTTTGTTTTGCACATCCGAATGTTGACGTGCTTTTGGATCGGTATTTGACTCGAAATTTGTCGCCGCTGAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAATTTAATCGCGATTTCGCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA

mRNA sequence

ATGAGGTTGAAAGTGGAAACCAGTTCGATGGAGCTGCTTGATCTCAGTAGTGTCGTTGCCAAAACTCCTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAGCAGCAAACTAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGCCGGTGAGCTTTCTAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGGTTTTTTTGTTTTGCACATCCGAATGTTGACGTGCTTTTGGATCGGTATTTGACTCGAAATTTGTCGCCGCTGAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAATTTAATCGCGATTTCGCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA

Coding sequence (CDS)

ATGAGGTTGAAAGTGGAAACCAGTTCGATGGAGCTGCTTGATCTCAGTAGTGTCGTTGCCAAAACTCCTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAGCAGCAAACTAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGCCGGTGAGCTTTCTAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGGTTTTTTTGTTTTGCACATCCGAATGTTGACGTGCTTTTGGATCGGTATTTGACTCGAAATTTGTCGCCGCTGAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAATTTAATCGCGATTTCGCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA

Protein sequence

MRLKVETSSMELLDLSSVVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRFFCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK

Homology

[Close]

BLAST of CmoCh17G004580 vs. ExPASy Swiss-Prot
Match: Q9FKK2 (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 18  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFF 77
           +V K+ GRQKIE+ K++ +S+  VTFSKRR+ LFKKA EL  L        +     + F
Sbjct: 1   MVKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVF 60

Query: 78  CFAHPNVDVLLDRYLTRNLSPLKPAEN 100
            F HPNVD ++DR++  N  PL P ++
Sbjct: 61  SFGHPNVDSVIDRFINNN--PLPPHQH 85

[Close]

BLAST of CmoCh17G004580 vs. ExPASy Swiss-Prot
Match: O80807 (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-09
Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 18  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------ 77
           +V KT GR+K+EI K+ K+S+  VTFSKR+A LFKKA E   L   A +  I F      
Sbjct: 1   MVKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCD-AKIAMIVFSPAGKV 60

Query: 78  FCFAHPNVDVLLDRY----LTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
           F F HPNVDVLLD +    +  N + L  +   + V   N+ + ++  + E  +K
Sbjct: 61  FSFGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQK 114

[Close]

BLAST of CmoCh17G004580 vs. ExPASy Swiss-Prot
Match: Q4PSU4 (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-09
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 24  GRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHP 83
           GRQKI + K++K+S + VTFSKRRA LFKKA EL  L   A +  I F      F F HP
Sbjct: 63  GRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCG-AEIGIIVFSPAKKPFSFGHP 122

Query: 84  NVDVLLDRYLTRNLSPLKPAENF----VPVTEFNRDFADLVLKFEVAKK 123
           +V+ +LDRY++RN   L  ++          E N     ++ + E  KK
Sbjct: 123 SVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKK 170

[Close]

BLAST of CmoCh17G004580 vs. ExPASy Swiss-Prot
Match: Q9LMM8 (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-05
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 21 KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCF 80
          K  GR+KIE+ K+  +S+  VTFSKRR+ LFKK  EL  L   A +  I F      + F
Sbjct: 4  KNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCD-AEIAIIVFSPSGKAYSF 63

Query: 81 AHPNVDVLLDRYLTR 90
           HPNV+ LLD  L R
Sbjct: 64 GHPNVNKLLDHSLGR 77

[Close]

BLAST of CmoCh17G004580 vs. ExPASy Swiss-Prot
Match: Q9ATE5 (MADS-box protein FBP24 OS=Petunia hybrida OX=4102 GN=FBP24 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.7e-05
Identity = 39/107 (36.45%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 24  GRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF--------FCFA 83
           GR KIE+K++E K+S+ VTFSKRRA L KK  ELS L   A +  I F        +C  
Sbjct: 5   GRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCD-AQIGLIIFSSKGKLFEYCSQ 64

Query: 84  HPNVDVLLDRYLTRNLSPLKPAENFV----PVTEFNRDFADLVLKFE 119
             ++  ++ RYL    + L   +N V     V +  RD  +L L  +
Sbjct: 65  PHSMSQIISRYLQTTGASLPVEDNRVQLYDEVAKMRRDTLNLQLSLQ 110

[Close]

BLAST of CmoCh17G004580 vs. ExPASy TrEMBL
Match: A0A6J1KVC9 (agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111499040 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.6e-30
Identity = 81/108 (75.00%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCF 80
           KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF
Sbjct: 15  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCG-AEVAIIVFSPNDKVFCF 74

Query: 81  AHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
            HPNVDVLLDRYLT NLSP KPAE++VPV EFNRDFADLVL+FE  KK
Sbjct: 75  GHPNVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKK 121

[Close]

BLAST of CmoCh17G004580 vs. ExPASy TrEMBL
Match: A0A6J1H4M6 (agamous-like MADS-box protein AGL62 OS=Cucurbita moschata OX=3662 GN=LOC111460353 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 9.8e-30
Identity = 80/108 (74.07%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCF 80
           KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF
Sbjct: 15  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCG-AEVAIIVFSPNDKVFCF 74

Query: 81  AHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
            HP+VDVLLDRYLT NLSP KPAE++VPV EFNRDFADLVL+FE  KK
Sbjct: 75  GHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKK 121

[Close]

BLAST of CmoCh17G004580 vs. ExPASy TrEMBL
Match: A0A5D3D807 (Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G001020 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28
Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCF 80
           KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF
Sbjct: 3   KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCG-AEVAIIVFSPNDKVFCF 62

Query: 81  AHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
            HP+VDVLLDRYLT NLSP KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 63  GHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKK 109

[Close]

BLAST of CmoCh17G004580 vs. ExPASy TrEMBL
Match: A0A1S3CRI8 (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103503920 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28
Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCF 80
           KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF
Sbjct: 11  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCG-AEVAIIVFSPNDKVFCF 70

Query: 81  AHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
            HP+VDVLLDRYLT NLSP KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 71  GHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKK 117

[Close]

BLAST of CmoCh17G004580 vs. ExPASy TrEMBL
Match: A0A0A0LE01 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28
Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCF 80
           KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF
Sbjct: 11  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCG-AEVAIIVFSPNDKLFCF 70

Query: 81  AHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
            HP+VDVLLDRYLT NLSP KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 71  GHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKK 117

[Close]

BLAST of CmoCh17G004580 vs. TAIR 10
Match: AT5G60440.1 (AGAMOUS-like 62 )

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 18  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFF 77
           +V K+ GRQKIE+ K++ +S+  VTFSKRR+ LFKKA EL  L        +     + F
Sbjct: 1   MVKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVF 60

Query: 78  CFAHPNVDVLLDRYLTRNLSPLKPAEN 100
            F HPNVD ++DR++  N  PL P ++
Sbjct: 61  SFGHPNVDSVIDRFINNN--PLPPHQH 85

[Close]

BLAST of CmoCh17G004580 vs. TAIR 10
Match: AT1G65360.1 (AGAMOUS-like 23 )

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10
Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 18  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------ 77
           +V KT GR+K+EI K+ K+S+  VTFSKR+A LFKKA E   L   A +  I F      
Sbjct: 1   MVKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCD-AKIAMIVFSPAGKV 60

Query: 78  FCFAHPNVDVLLDRY----LTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
           F F HPNVDVLLD +    +  N + L  +   + V   N+ + ++  + E  +K
Sbjct: 61  FSFGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQK 114

[Close]

BLAST of CmoCh17G004580 vs. TAIR 10
Match: AT2G24840.1 (AGAMOUS-like 61 )

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 24  GRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHP 83
           GRQKI + K++K+S + VTFSKRRA LFKKA EL  L   A +  I F      F F HP
Sbjct: 63  GRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCG-AEIGIIVFSPAKKPFSFGHP 122

Query: 84  NVDVLLDRYLTRNLSPLKPAENF----VPVTEFNRDFADLVLKFEVAKK 123
           +V+ +LDRY++RN   L  ++          E N     ++ + E  KK
Sbjct: 123 SVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKK 170

[Close]

BLAST of CmoCh17G004580 vs. TAIR 10
Match: AT4G36590.1 (MADS-box transcription factor family protein )

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-09
Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 18 VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFF 77
          +V  T GRQKIE+KK+E +S+  VTFSKRR  LFKKA EL  L     L  +     + F
Sbjct: 1  MVRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVF 60

Query: 78 CFAHPNVDVLLDRYLTRN 91
           F HP+V  L+ R+   N
Sbjct: 61 SFGHPSVQELIHRFSNPN 78

[Close]

BLAST of CmoCh17G004580 vs. TAIR 10
Match: AT1G17310.1 (MADS-box transcription factor family protein )

HSP 1 Score: 58.5 bits (140), Expect = 4.2e-09
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 22  TPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELS-----RLPSLASLRTIRFFCFAH 81
           T GRQKIEIKK+E+++ + VTFSKRR  LFKK+ ELS     ++  +   +  R + F H
Sbjct: 46  TRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRFGH 105

Query: 82  PNVDVLLDRYLTRNLSPLK 96
             VD L+D+YL +  SP+K
Sbjct: 106 --VDALIDKYLRK--SPVK 120

The following BLAST results are available for this feature:

BLAST of CmoCh17G004580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKK2	1.4e-09	43.68	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]
O80807	2.4e-09	39.13	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=...	[more]
Q4PSU4	2.4e-09	40.37	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=...	[more]
Q9LMM8	1.2e-05	46.67	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=...	[more]
Q9ATE5	4.7e-05	36.45	MADS-box protein FBP24 OS=Petunia hybrida OX=4102 GN=FBP24 PE=1 SV=1	[more]

BLAST of CmoCh17G004580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVC9	2.6e-30	75.00	agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111499040 ...	[more]
A0A6J1H4M6	9.8e-30	74.07	agamous-like MADS-box protein AGL62 OS=Cucurbita moschata OX=3662 GN=LOC11146035...	[more]
A0A5D3D807	1.1e-28	71.30	Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CRI8	1.1e-28	71.30	agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103503920 PE=4...	[more]
A0A0A0LE01	1.4e-28	71.30	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G860240 PE...	[more]

BLAST of CmoCh17G004580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60440.1	1.0e-10	43.68	AGAMOUS-like 62	[more]
AT1G65360.1	1.7e-10	39.13	AGAMOUS-like 23	[more]
AT2G24840.1	1.7e-10	40.37	AGAMOUS-like 61	[more]
AT4G36590.1	3.2e-09	46.15	MADS-box transcription factor family protein	[more]
AT1G17310.1	4.2e-09	46.84	MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 25..45 score: 46.74 coord: 45..60 score: 65.58
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 23..77 e-value: 6.4E-6 score: 35.7
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 33..60 e-value: 3.1E-8 score: 33.0
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 23..60 score: 15.418246
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 35..97 e-value: 8.6E-9 score: 37.1
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 24..91
None	No IPR available	PANTHER	PTHR11945:SF607	AGAMOUS-LIKE MADS-BOX PROTEIN AGL62	coord: 18..122
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 18..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G004580.1	CmoCh17G004580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity