CmoCh17G004510 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G004510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Autophagy-related protein
Location	Cmo_Chr17: 3081456 .. 3086506 (+)
RNA-Seq Expression	CmoCh17G004510
Synteny	CmoCh17G004510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATTTTCGTAAAATTGTCAAACTTTGTTTTTTTGAAAAAAAAAAAATGATTACAAAAAATAGGTGGAAGCTTTGAACAGAAGCTGAGTCATCCCGTGATCATCCCGTCTTATCTGATTGCCATTAAAAGAGCGTACAAATTCCAATTCACTTTTGTCAACACACAACTTTTTGATAATTTCAACAGATTAGCATCGCAATTCCCGTCTTCATCTCATTTTCTCTCAATTTTTCGCTTTTGATTTTTTCGCTTGCTTGCTGGAGATACAGATTTCAGCCAAGAAATCGAACGAAACTTCAGTTTTGGTCTCCTCCTTCCCTGCCGGCGACTATCAGGTTCGTATTTCTTTACCGATGATTCGATTTTGTGTTTAATCTTAGTTGACTAAATTCGTGGATTGTTGGCTTGATCGATTACTATTCCGAACTTGGAGATATTGCGCTACTTGTCTTTGTTTTATTTCTGTTCTATGCTTCAATTCCTAAAATAGTGGTTTATGGTATTCATTATTGTCTTAAAATTTGTGATTCCAGCTTCGGTCTATGATTTTTATTGGTTCAGTTATGAATATAATATGGATTACGACTGATTGTTAGTTCAATCTCTCTCTCTCAGTTTTTCGTGACTATAATGTCGACGAGCTCGTTCAAGCAAGAGCATGATTTTGGTATATTCTTGAGCTTTCTTATGGAATCCTGTATTTTTATTAGTTTTTCAAACTAGAATCATCTTTGATTTGTTCTGATTCTTTGATTTGTTCATTTTTCTGCAGAAAAGAGACACGCTGAGGCTGCTCGGATTAGAGAGAAGTACCCAGACAGAATTCCAGTAAGATTTATGACTTTTCTTGAGCTTTATTTTTTTTGTTGTTCTGGATATATATTTTCAAATTGGATATTCATGCTTTGTATGTACTGAAATTGGGGTCATTTGACCTTTGACTGCGCAATATATCATTCTTTGTCTCTCAGTTTATATGTATTTATGTGTGAGTATTTATAATCATGTCAAATGATATTTTTCTCCGAACAGATCAAAACAATTTCACGATTGCTATTAATGGCTTATGCTTATTGACTCTCTTTCCTATCCATTCCTGGCATATTCCATTTATGAACATTGCTTGTTTGACCTCTCTTAATATCTTAAGCGTAACATCTGTCCGGAAAGAAGAGCTATGTAATACATAAATTTTGGTTGTAAAGTAGAGATTAGTTGTCGATACTATTTCTATCTCGACTTGTTGAGCATGCATGTTTAGATGCTATATATAGTACGTCTTGCTATGGAAAATTTTCATTGATGGTGTCACCGTATTGATTACTGTATTACTATCTTTCACCCGGTGAATTTTTATGATTTCATTCCTGCTCACCCAATTTGTTTTTTCAAATATGAGATAGTTGACAGTGAGAAATTAGTGAAAGGGGATCCAGTTATGCAAGGATCTTCTTTCCTGTTTCTATATTCTTATGTATTATTGTTATTATTATAGTATTATTAATCTTTTTTTATTATTAAAGAAATCAACCTTTCATTGATAAACATGAAAAAAAACAACAACCCAATGAGGAATCCAAACAACAACAGACCTGTCAAAAAGAAAAAAGAAAAAAAAAAAGAAAAAGAAAAAAGCTCCCATCTGAAAGAATGAAAGCTTGAGGGCAATTGCAAGAGTCCTTAGTTATATAAGCCCGAAGTCAATGAGCAGTTGTTGCTAAAGAATAGTATATTTACTGAAACTTTCTTTATCTTCAATTACATATGCATGCCAATCAAAATGTTCATGATATAAACAGTACTACTACACGTTTTTATTTTTCATGCCGTTCTGGGATGCATTCTTTATTTTTCAAATTTGTCTCATGTCGTTATGGTTTCATGTTTTCTTCTTGTTATTATCATTCTCTTTTGTGTTGATCAGGTAATTGTGGAGAAGGCAGAGAGAAGTGATATTCCCAACATTGACAAAAAAAAGTAAGAAGAATTTACTTTTAGCAGTTTTACTTCAGTTTCTTTACATTTCTTATTAACAAATGATAAAAAAGAAAAAAAAGAAAAAAGAAAGTTTCTTAACATTGAAGCGTTTTCATTTTATAGACAAACTTACTCTCTTATTCATAAGTGCTTCTTCTGCATCTCATATTTCTTCCTCCCTCCCATTTCTTTTTCCATAGTCCTTTAATGGGAGTAATGCTGGTTATGTAATTAGGACAGTATAATTGTAGAAAGATGCTGATAACTCTTGTCGACCTTCCAAGCTGTGCATCGATTGAATGGTTTAGGAATTTATTTTTCTCATTTCTTGCACTGTAATTGCAACAAGGCTTTGGTTGCAGCTTTAATGTCCAATGTTTAGTGCTTGATTTTCAAACTTAACTAAGAGAGGTTTTTAGTTTCTTAATAACCTGAATACAATTTTTTTGCAGGTATTTAGTGCCTGCTGACCTGACTGTTGGTCAATTCGTTTATGTTATCCGGAAGAGAATAAAACTGAGTGCAGAAAAAGCAATTTTCATATTCGTGGACAATGTGCTACCGCCAACAGGTTAATCACCCTTTTTCTTTTTAGGTCAAGATCTGTTGAAAACGGTAAATCAGGATCGTTCTGTTTAATATGATGGATAATCTTTCGTAATTTTTTCTTAATATCTTTACCTAGAAGCATAAAATTAATTAATAGATGAGATCCATGAATTGTCCCGATTCATTTAACGTCATTCTCAGTCTTGACCGTTGTTTCTATGGTATTGTTATAATCCTATTTATCATTTTATTAGGCAAGTTATGTCATAACCAATTGGTTCTAACTTTAATGGTTGTGTATCTATTTAGTCCTTAAAACTCCATTTTTTTAAAATTCATTTTCATTCTATTAAGTTCTCATCGTTAGTATCGTTATTTAAATATTTTCACATTGCGGATTAATGTGTTGATGACTGATGATGAATTGGTGAAACATGACACAAATGAGTTACAAGTTGGATTAAAGTAAGGCAAGAAGGCCCAAAAAAAAAAAAAAAAAACAAATAGTTGGCAGGTGAAATTCATTTTTAACTCAATCTTTTGATCTGCCTATCATTCTTTTACCCAATTGGCACACTACCTTGTGCCACTTTTGTTATGGAGGATGTAAGGAGCAGACAGGATTTGGGGTGTGAGAATGCCACGCTCAAAACACACTGAACAGAGGCCAACGTTGTATATATGGATTGTCAACATGTGCGTGATGTTTAAGGGGAAACTATACACAATAAATGAGCTGGAAAATACTAAAAATGCGTATATTCTCTCAGCTGTAACGTGGGTTTCTTACTGTCATAGGTTTTAGATGTCAAGTATTTCTGTAGTCTAGGAGTTGTTTCTCAGATTTTTGTATTTAAGCATTGGAAACCAATGGAAAAGGAACGGACATTTGGGTTCCTTGGGACTCAATTTCAAAAGTCTAGACTCCCTCCAATAAACCTACTATCTTTGCTTACTTTAGTGACAGCCATCTCTTCTTTGCTGTATACACGACGCAGAGTTTTTGTATCGACACTTTCAAACGAGAGACATCAGAAACATCTCTAATTATTGACTTCATGCTTCTGATTTTACAGGGTCTCTCATGTCTGCAATCTACGATGAGAGGAAGGATGAGGATGGCTTTCTCTATGTTACGTACAGTGGAGAGAACACATTTGGGTGACACCCACAAAAGTATGCAGTTTCCTGCTCTCTCTCCTTGTTTATTATTGTCTTTATCAGTCTCCCACAACCCATTGTTAATCTTTGTTGCTGTTTGTGCCAAACGTATGCCAAATCGCGTCTGTAAATAAATTGTATAGTCGATGACAGACTTCTTATATATATATATATATCCTCTGATAAACTTTGAGGCCATAGTCATTATTTCAACTTGTAATCCAGTTGAATTGTACCTAATGAAGTGCTAAAAGTTGTAAACTCTAAAGCTTTGATGGCCTTGATTCAGATTTGAAGTTCGAAATGAACATATTGAACTGATCAAACCAGATTGAAGTTAGGAATTAATTATCTCAACTAAGTTGTATATATTGGACAGGCTCTCTTCGTTGCTTACTGCGTTGGTTTATTTCCTTTTTTTTCCCTCTTGGAAAAGATGAGTAATCCAACGAAAAGCTTTTGAAGAGTGAAACTGTGGTATCTAATGTGGATCTCTGAAGTTAATGTATTTTTTTTTGTTAAGCATATAAAATGTTATCAATCCAGAGAGCTGGATAGGCGGCAAATTTATCTTTCTTTTTAAGGAACCTCTCCTTTGATGTAATATTGTCTATTTTGAGTACAAGTTAGAGTAGTTTTGTTTTTGGTTTTTCCAAATGGTCTCATACTAGTGGCGGTGGGATAGTGTCACATATAAACTCATGATTTTCCTTTTAATTAGTTAAGGTGGGATTACCCTTTTCAATAATTCTCAACGATCTTCCTCTCGAACAACTACACCATAAAACTTCATCGGAGGCCTTCTTTGGAGCTTTCGAATAAAGTACACCCTTTGTTCAAAGCCTCTCCAGAGGCCTTCTCTGGAGCTCTCGAACAAAATATACTCATTGTTCAGAGCCTCCCTTGATGCCTTCTTTGGAGCTCTCGAACGAAGTGCACCATTTGTTCGACACTTGAGTCATCTTTGACTATATCCTCGAGATTCACAACTTCTTTGTTCAACACAGGAGGTCTTCTTTGGACCTCTCGAACAACCTCTCCTTAATTGAGGCTCACAATTTCTTTGTTTGATACTTAAGAATTCTAAATCTTGACAATAATATAATATTGTTCACTTTAGAGCTAGAATAAACTCGGATGACTTTGCTTCTGGTTTTCCCAACAAGCCTAATAGCAATAAACAATGCTTCTTACTTACAACTCTTGATCTTGATTTTACATGGTGCAAGTTGATTTGAAATTTATTGTTTGTAGTAAACCAGGGGTAGCTAGAGATTAAATTCCTGCCATGTTCCTCTCATGTTTTTATCTTTATTTTTAATTTTTTTTATACAGTGCTGTGTATATATGTATATTTAA

mRNA sequence

ATGGGCATTTTCATTTCAGCCAAGAAATCGAACGAAACTTCAGTTTTGGTCTCCTCCTTCCCTGCCGGCGACTATCAGTTTTTCGTGACTATAATGTCGACGAGCTCGTTCAAGCAAGAGCATGATTTTGAAAAGAGACACGCTGAGGCTGCTCGGATTAGAGAGAAGTACCCAGACAGAATTCCAGTAATTGTGGAGAAGGCAGAGAGAAGTGATATTCCCAACATTGACAAAAAAAAGTATTTAGTGCCTGCTGACCTGACTGTTGGTCAATTCGTTTATGTTATCCGGAAGAGAATAAAACTGAGTGCAGAAAAAGCAATTTTCATATTCGTGGACAATGTGCTACCGCCAACAGGGTCTCTCATGTCTGCAATCTACGATGAGAGGAAGGATGAGGATGGCTTTCTCTATTGCTGTGTATATATGTATATTTAA

Coding sequence (CDS)

ATGGGCATTTTCATTTCAGCCAAGAAATCGAACGAAACTTCAGTTTTGGTCTCCTCCTTCCCTGCCGGCGACTATCAGTTTTTCGTGACTATAATGTCGACGAGCTCGTTCAAGCAAGAGCATGATTTTGAAAAGAGACACGCTGAGGCTGCTCGGATTAGAGAGAAGTACCCAGACAGAATTCCAGTAATTGTGGAGAAGGCAGAGAGAAGTGATATTCCCAACATTGACAAAAAAAAGTATTTAGTGCCTGCTGACCTGACTGTTGGTCAATTCGTTTATGTTATCCGGAAGAGAATAAAACTGAGTGCAGAAAAAGCAATTTTCATATTCGTGGACAATGTGCTACCGCCAACAGGGTCTCTCATGTCTGCAATCTACGATGAGAGGAAGGATGAGGATGGCTTTCTCTATTGCTGTGTATATATGTATATTTAA

Protein sequence

MGIFISAKKSNETSVLVSSFPAGDYQFFVTIMSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYCCVYMYI

Homology

[Close]

BLAST of CmoCh17G004510 vs. ExPASy Swiss-Prot
Match: Q8VYK7 (Autophagy-related protein 8f OS=Arabidopsis thaliana OX=3702 GN=ATG8F PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.1e-48
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 32  MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 91
           M+ SSFKQEHD EKR AEAARIREKYPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query: 92  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           FVYVIRKRIKLSAEKAIFIFVDNVLPP G+LMS++Y+E+KD+DGFLY
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLY 107

[Close]

BLAST of CmoCh17G004510 vs. ExPASy Swiss-Prot
Match: Q9LZZ9 (Autophagy-related protein 8g OS=Arabidopsis thaliana OX=3702 GN=ATG8G PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-46
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 32  MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 91
           MS  SF+Q+HDFEKR AEA RIREKY DR+PVIVEK+E+SDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MSNVSFRQDHDFEKRKAEALRIREKYSDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQ 60

Query: 92  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           FVYVIRKRI+LSAEKAIFIFVDNVLPPTG++MS IYDE K+EDGFLY
Sbjct: 61  FVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLY 107

[Close]

BLAST of CmoCh17G004510 vs. ExPASy Swiss-Prot
Match: M1C146 (Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.5e-46
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 32  MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 91
           M+ SSFK EH  E+R AEAARIREKYPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 92  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           FVYV+RKRIKLSAEKAIFIFV N+LPPT ++MSAIY+E KDEDGFLY
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEHKDEDGFLY 107

[Close]

BLAST of CmoCh17G004510 vs. ExPASy Swiss-Prot
Match: Q8S926 (Autophagy-related protein 8e OS=Arabidopsis thaliana OX=3702 GN=ATG8E PE=1 SV=2)

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-45
Identity = 88/104 (84.62%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 35  SSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVY 94
           S FK ++DFEKR AEA RIREKYPDRIPVIVEKAE+S++PNIDKKKYLVP+DLTVGQFVY
Sbjct: 5   SIFKMDNDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVY 64

Query: 95  VIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           VIRKRIKLSAEKAIFIFVDNVLPPTG LMS++Y+++KDEDGFLY
Sbjct: 65  VIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLY 108

[Close]

BLAST of CmoCh17G004510 vs. ExPASy Swiss-Prot
Match: A2YS06 (Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=3 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 5.5e-45
Identity = 91/107 (85.05%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 32  MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 91
           M+ SSFK EH  E+R AEA RIREKYPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 92  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           FVYV+RKRIKLSAEKAIFIFV N LPPT +LMSAIY+E KDEDGFLY
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLY 107

[Close]

BLAST of CmoCh17G004510 vs. ExPASy TrEMBL
Match: A0A1S3C739 (Autophagy-related protein OS=Cucumis melo OX=3656 GN=LOC103497661 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 8.3e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 32  MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 91
           MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 92  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 107

[Close]

BLAST of CmoCh17G004510 vs. ExPASy TrEMBL
Match: A0A6J1L5L8 (Autophagy-related protein OS=Cucurbita maxima OX=3661 GN=LOC111499334 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 8.3e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 32  MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 91
           MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 92  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 107

[Close]

BLAST of CmoCh17G004510 vs. ExPASy TrEMBL
Match: A0A5D3CUD2 (Autophagy-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold268G00030 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 8.3e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 32  MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 91
           MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 92  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 107

[Close]

BLAST of CmoCh17G004510 vs. ExPASy TrEMBL
Match: A0A6J1H5U6 (Autophagy-related protein OS=Cucurbita moschata OX=3662 GN=LOC111460388 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 8.3e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 32  MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 91
           MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 92  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 107

[Close]

BLAST of CmoCh17G004510 vs. ExPASy TrEMBL
Match: A0A0A0KFQ8 (Autophagy-related protein OS=Cucumis sativus OX=3659 GN=Csa_6G109660 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.4e-51
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 32  MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 91
           MSTSSFKQEH+FEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 92  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 107

[Close]

BLAST of CmoCh17G004510 vs. TAIR 10
Match: AT4G16520.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 192.2 bits (487), Expect = 2.9e-49
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 32  MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 91
           M+ SSFKQEHD EKR AEAARIREKYPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query: 92  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           FVYVIRKRIKLSAEKAIFIFVDNVLPP G+LMS++Y+E+KD+DGFLY
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLY 107

[Close]

BLAST of CmoCh17G004510 vs. TAIR 10
Match: AT4G16520.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 192.2 bits (487), Expect = 2.9e-49
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 32  MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 91
           M+ SSFKQEHD EKR AEAARIREKYPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query: 92  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           FVYVIRKRIKLSAEKAIFIFVDNVLPP G+LMS++Y+E+KD+DGFLY
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLY 107

[Close]

BLAST of CmoCh17G004510 vs. TAIR 10
Match: AT3G60640.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-47
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 32  MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 91
           MS  SF+Q+HDFEKR AEA RIREKY DR+PVIVEK+E+SDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MSNVSFRQDHDFEKRKAEALRIREKYSDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQ 60

Query: 92  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           FVYVIRKRI+LSAEKAIFIFVDNVLPPTG++MS IYDE K+EDGFLY
Sbjct: 61  FVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLY 107

[Close]

BLAST of CmoCh17G004510 vs. TAIR 10
Match: AT2G45170.1 (AUTOPHAGY 8E )

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-46
Identity = 88/104 (84.62%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 35  SSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVY 94
           S FK ++DFEKR AEA RIREKYPDRIPVIVEKAE+S++PNIDKKKYLVP+DLTVGQFVY
Sbjct: 5   SIFKMDNDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVY 64

Query: 95  VIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           VIRKRIKLSAEKAIFIFVDNVLPPTG LMS++Y+++KDEDGFLY
Sbjct: 65  VIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLY 108

[Close]

BLAST of CmoCh17G004510 vs. TAIR 10
Match: AT2G45170.2 (AUTOPHAGY 8E )

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-46
Identity = 88/104 (84.62%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 35  SSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVY 94
           S FK ++DFEKR AEA RIREKYPDRIPVIVEKAE+S++PNIDKKKYLVP+DLTVGQFVY
Sbjct: 5   SIFKMDNDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVY 64

Query: 95  VIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLY 139
           VIRKRIKLSAEKAIFIFVDNVLPPTG LMS++Y+++KDEDGFLY
Sbjct: 65  VIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLY 108

The following BLAST results are available for this feature:

BLAST of CmoCh17G004510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYK7	4.1e-48	87.85	Autophagy-related protein 8f OS=Arabidopsis thaliana OX=3702 GN=ATG8F PE=1 SV=1	[more]
Q9LZZ9	1.7e-46	85.05	Autophagy-related protein 8g OS=Arabidopsis thaliana OX=3702 GN=ATG8G PE=2 SV=1	[more]
M1C146	8.5e-46	85.05	Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV...	[more]
Q8S926	1.9e-45	84.62	Autophagy-related protein 8e OS=Arabidopsis thaliana OX=3702 GN=ATG8E PE=1 SV=2	[more]
A2YS06	5.5e-45	85.05	Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=...	[more]

BLAST of CmoCh17G004510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C739	8.3e-52	100.00	Autophagy-related protein OS=Cucumis melo OX=3656 GN=LOC103497661 PE=3 SV=1	[more]
A0A6J1L5L8	8.3e-52	100.00	Autophagy-related protein OS=Cucurbita maxima OX=3661 GN=LOC111499334 PE=3 SV=1	[more]
A0A5D3CUD2	8.3e-52	100.00	Autophagy-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1H5U6	8.3e-52	100.00	Autophagy-related protein OS=Cucurbita moschata OX=3662 GN=LOC111460388 PE=3 SV=...	[more]
A0A0A0KFQ8	2.4e-51	99.07	Autophagy-related protein OS=Cucumis sativus OX=3659 GN=Csa_6G109660 PE=3 SV=1	[more]

BLAST of CmoCh17G004510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16520.1	2.9e-49	87.85	Ubiquitin-like superfamily protein	[more]
AT4G16520.2	2.9e-49	87.85	Ubiquitin-like superfamily protein	[more]
AT3G60640.1	1.2e-47	85.05	Ubiquitin-like superfamily protein	[more]
AT2G45170.1	1.4e-46	84.62	AUTOPHAGY 8E	[more]
AT2G45170.2	1.4e-46	84.62	AUTOPHAGY 8E	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004241	Autophagy protein Atg8 ubiquitin-like	PFAM	PF02991	Atg8	coord: 45..140 e-value: 7.0E-45 score: 151.5
IPR004241	Autophagy protein Atg8 ubiquitin-like	PANTHER	PTHR10969	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	coord: 30..139
None	No IPR available	GENE3D	3.10.20.90		coord: 22..143 e-value: 7.5E-53 score: 179.7
None	No IPR available	PANTHER	PTHR10969:SF77	AUTOPHAGY-RELATED PROTEIN	coord: 30..139
None	No IPR available	CDD	cd16128	Ubl_ATG8	coord: 43..138 e-value: 1.16379E-66 score: 195.757
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 34..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G004510.1	CmoCh17G004510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006914	autophagy
biological_process	GO:0006995	cellular response to nitrogen starvation
cellular_component	GO:0016020	membrane
cellular_component	GO:0005874	microtubule