CmoCh17G004170 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G004170
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribosomal RNA small subunit methyltransferase G
Location	Cmo_Chr17: 2788170 .. 2793673 (+)
RNA-Seq Expression	CmoCh17G004170
Synteny	CmoCh17G004170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAAGCGAGGAGAAAAGAAAAAAGAAAATAAATAGAAAATTTTGGAAAATGCTATCTATTATCCGAGCGATTGGCAACTGAGAAGCCGAAAATCACTGACAACAAGGTAGGAAGAAGATGGGGGATCTCTACGCTTTGGACTTCGATGGAGTTCTCTGCGATAGCTGCGGAGAAAGCTCTCTTTCTGCTGTTAAGGTTCGCCTCTCTCTCACTTTTCCCTTTTGGTTCCTCTCAAAATGAATGAAAATTTGACTGAAAATGTGTTGATAGGACTCTCTTATGCCAATCGGCAATTCTTCGTTCAATTCAGTGATGTGAGGTTCTGAGAAATTGATAGATTGGAGGTTTAGATGTATTCGGTTGCCTAATGTGTTTGTTTATTCTGCAATTGTGTTGATAGCACTCTCTTATGCCAATCGGCAATTCTTCGTTCAATTCAATGCTGTGAGGTTCCGAGCTATTGATAGATTGGAGGTTTAGATGTATTTGGTTGCTTAATGTCTTTGTTTTTTCTGCAATTGGCTGGCGTTCGTTTGAATGTAGACTGAGGATCGAAGGGAGAACTTTGAATTGTTTTTTTTTTCTTCATAAGAGTAATTCATGAGTTGATTGGTTGTGCTTTGTGCTTCTGTTTGAATGTTATCAGGCTGCTAAGGTAAGATGGCCTGACTTGTTCAACGATGTGGATTCGAGCTTGGAGAATTGGATTGTGGATCAGATGTACACAGTGAGTCGTTATTGATCTTTAATTGTTTCAATCTGTATGTTTTTTGGGGGTTGTGGATGTTTTCTTAACCCATACGGTTGTGAATCTATCTATCATCGAAGTACATGACAAATTTTGTAGTGGGTTTATAGATATTCTGTAATTTAAACGTTCTATTCAATTTTTTTTCCATTGTTTCAGTGTTTTAAATATAGCTCAGTCAAATTTAAAGATTGAGAAACATAAAACTAGTAAAATATGTTCTTATGAAAAAGACATTCGAGAAAAAGAAGAAAAATGGCGATAACCGAGAGAAAATGAGGGGGCAGGAGTTTAAGCGACCTGTTGTATCTCAAGGACTTGGTGTTAATTAGTTGCAGGCAAAAGATATAAGGTTGTTCTGAAATAGCTTTATGCCTTCTAGATTTTTCAAAAAAGTTCCCTTGTTTTCTTATAGCCTGTATTCAATTCATAGATCAACCATCTTCTATAGTAATAGAAATTGCCTTTTCTTCTAAGAGTTAGGATTTGGAGTCGGTTAGGAATCATGACCCTCCACAATGGTATGATATTGACCACTTTGAGCATAATCTCTCATGGCTTTGTTTTTTGTTTCCCCAAAAGGCCTTAGACCAATGGAGATGTATTTCTTATCTAAACAAATGATCAACCCATTAATTAGCCGATGTGGGACTCCTTTCCCAATAATCCTCCCCTCGAATGAAGTACACCATACAGTCTCCCCTGAGGCCTATTGATCCCTCGAACAGCCTCCCCTTAATCGAGGCTTGACTCCTTCTCCGGAGCTCTCGAACAAAGTACACTCTTTATTCGACACTTGAGTCACTTTTAACTATACCTTCGAGACTCACAACTTCTTTGTTCGACATCTAAGGGTTCTATTGACACGGCTAAGTTAAGGGCATGGATTTGCTACCATGTTAAGAATCACGACCCTCCGTAATGGTGTGATATTTTCTACTTTGAGCATAAGCTTGCATGACTTTGCTTTTGGTTTCCCCAAAGGGTCTCGTACCAATGGAGATGTATCCCTTACTTATAAACTAATGATCAACCCCTTAATTAGCTGATGTAGGAGGTATTCCTTACTTATAAACCAATGATCAACCCCTTAATTAGCTGATGTAGGACTCCTCTCCCTGCAATCCTCGACCATACTTTATATAGTTTGCTTCTTGTGTTTGGCTCTTTTTATTTGGTTGTTCTTTTAGTTTTGAACATCAAATTTTAATAAGGAAAAAAAAAAAAAACAAAAAAACAATTGCGCAATATCTTTAATATTTAAAATCATTCAGCCATAGGTCTTCTAAAAGAAATTAAGACAAAAAATAGAGAACTGCCGTGAAATAACTCCAAGCTTTTGTTCCAATCTATCCCCCACTTTATAACCCTTCATAATTATACAAAGAAACTGGTAATCTTTCTGGGGCATTTTTATAGTATTAAAGAGGGAAAAGCCTCAGAAATTTCATTAGCAGACTGAAGTTTTCAATAAAAATACTGTTAATATAACTAATGCCTGTAATGTGGTAGGTCCGCCCTGTGGTTGAAACTGGATATGAGAATTTGTTGCTGGTGAGGTTGCTGTTGGAGATGAGATTGCCTTCAATTAGGAAATCTTCGGTGGGTATTTGCCCACAGTTTTGCTTCAGTTTATAATATCAGTTCTATTGACATGCTTAGGAAATTTTGCGGACATTACATTTTATTTTTTCAATTAGAAAGGTTGCAGAAGGGCTCCTAGTTCAAGGAATATTGGAGAATTGGTCAAACCTCAAACCAGTCATCATGGAAGAATGGGGAGAGAATAGAGATGCTCTCATAGACCTTTTTGGAAAGGTTAGAGATCAATGGATGGATGAGGACTTAACAACTTGGATCGGTGCAAATAGGTACTTTGGACAATCTTTTCAAATGAAACAGATATCCTGTTTCAAACTAATGGTGGATAAAGCCACCATGGGAATTTGAGTACTTTTTGGTAGCTTTCGTTTCTTTTGTTTGAGCTACAATATCTTTGTTGTCCAATTGACCTTCTCTATTTAGTAAGAAGATAGCGAGAAGATAGGCGGTTGGAAAGGGGAACTAAGCATTCCTTATAATGGTGTGGAAACCTCTCCTAATAGACGCGTTTTAAAACCGTGAGACTGACGGTGATATGTAATGAGCCAAAGCGGACAACATCTGCTAGCGGTGGGCTTGGACTGTTACAAATGGTACCAAAGCCAGACACCAAGCAATGTGCCAGCGAAGACACTGAGCCCCCAAGAGGGGTAGATTCTGAGATCCCATATCGGTTGGAAATGGGAACTCATCATTCCTTATAACTGTGTGGAAACCTCTCTCTAACAGACACGTTTTAAAACCGTGAGGCTAACGGCAATATGTAACGGGCCAAAACAGACAATATCTGCTAGCAGTGGGTTTGGGCCGTGAATCTTTAAGCATTTAAAATTAACAAAAAAAATAAAATAAAATTAAGCTGACACCATGGGAGAGACAACTATGAAAACGTTTGAGGCTTTAACTATGGAGAAATGTATCTGTTATTCATCAAGAGGATGATACATTAGTCTAGCTACTTTTTAAAAAAAAATCGATTGTTACTTGTTTAACATTATTGTAGAATAACTTCAGGCTTATCCAGATGGGATAGTCCAAAAGCTCAACTCTTATTTAATGAAATCATGTTCTTTTTAGTCCCGAATGACATTTAATATATCCGACACTGATGTTGGCATTCACTCTTGGTCAAAACTGGCATATTGTGAATCATCATATACAAATCACTTCTACTTTTAGATTTGGAAGGCTATTGCATCTACAACATTGTGTACAGATTTTATCCAGGTGTTTCTGATGCTCTGAAGTTTGCAAGCTCAAGGATATACATAGTTACCACAAAGCAGGTTGGATCCACACTTGACACTTACTAAACTCTCTAACACCATGTATCTTTCCTTGGAGTTATGCATCTTCTCACATATCTCATATGCTTCTCTTCTCTTTTTTTGGCGCAGGGTCGATTTGCCGATGCTCTACTACGAGAACTTGCAGGAGTGGCCATACCTCCCGAAAGAATATATGGTCTAGGAACGGGGTTAGTATATTCCTCTAGCATAATTGCCAGCAGGGTTGTTTCCAAATTTGCTACAACATCATGGTTCAACACAAATATTCTGGAATTTTACCAAATAACTTAATTAAATGTATAATTAGGCTCCACTCATGCAAATTGATATTTTTTTTCATGTTCGAACCACAGTGGACTATTTCATTCTTGCTAATTAAAATAAATAGAGTCATTAACGAGAAAATGGTTTGTATGAGTGCAAAATTAACTACAAAAAGACTTGATATAACTCTGCTTATAGAGAGTTATCAATAATCTTCACTAGCTCTTTGGATTTGTTTGACATATCATGAAAATATTTTCCCTCATTTCTTCTTAACTAACATTATTGATTCCTTTCAGTCCGAAAGTAGAAGTTTTAAAGCTGCTTCAAAAGATGCCTGAGCACCAAGGATTGAAGCTGCAGTAAGATATCTCTCATATTTTCACTCATCAATATTAGCATTGCCTGTTATAAGTGCCATTATACATGTTTTGTTCCTTCTTTTCTCTTCTCTCCCTTCAAAAGAGAGAGAAAACTAAGAATGTATGTGCTTTAAATGTGGCCAGCTTTGTGGAAGATCGATTGGCCACTCTAAAGAATGTCATCAAAGAGCCAGAATTAGATGCGTGGAATATATATCTGGGTACTCCTCCACTCTCCCTCTTTCAGTCTTTTCTCGAACATAATGATACTTTCATATTATCCTTTGACGTCCTAAAGTCCTTTTGAGAGAAAAGTTATAGATGAAGGGTAAGAATCCACTAAGTAGGAACAAAGGATTCACATCGATCGGATAAGAGAATGAGTGCCAGCAAGGATGCTGGGCCTCGAAGGGGGGTGGTTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGTGTTTTAAAAACCTTGAGGGGAAACCTAAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGTAGTGGACTTGGGTCGTTACAGTTATAGATGAAGGGTAAGAATCCACTAAGCAAACGCATAACCAAGAATAAAGGATTCACATCGATTAGATAAGGGAATGAGTGCCAACAAGGACACTGGCCCAAATGGGGGTGGATAGATCCCACATCGGTTGGAGAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAATGCATTTTAAAAACCTTGAGGGGAAGTCCGAAAGAGGACATATCTGCTAGCGGTGGGCTTGAGTTGTTACAGTTATAGACGAAGGGTAAGAATCTACTAAGGAGATGCATAACAAGGAACAAAGGATTCACAATTGCCCCTTCAATTTATCTAAGGTTTGATATCTTAATTTTCTAAGCTTTGGCTCTGTTGCTAATGGCTGCATATGGGCGTTCATTTGATGAGCATTAATCTTGTCTTACTGCTAATAGTGGACTGGGGATATAACACACAGAAAGAGAGAGAGGAAGCAGCTGCGATTCAAAGGATTCAACTTCTTCAGCTATCTGACTTCAGTACGAAGCTCAAGTAAGCACTTCATTGTTTCCAATTCATATTTATGTATCCTTTTTGCATATGAATGCTAATACTGATTATCTATTACATAATTTGAATTGATATTCATATTTGATAATTATCTTTTCGTTTACCC

mRNA sequence

GGTAAGCGAGGAGAAAAGAAAAAAGAAAATAAATAGAAAATTTTGGAAAATGCTATCTATTATCCGAGCGATTGGCAACTGAGAAGCCGAAAATCACTGACAACAAGGTAGGAAGAAGATGGGGGATCTCTACGCTTTGGACTTCGATGGAGTTCTCTGCGATAGCTGCGGAGAAAGCTCTCTTTCTGCTGTTAAGGCTGCTAAGGTAAGATGGCCTGACTTGTTCAACGATGTGGATTCGAGCTTGGAGAATTGGATTGTGGATCAGATGTACACAACATTCGAGAAAAAGAAGAAAAATGGCGATAACCGAGAGAAAATGAGGGGGCAGGAGTTTAAGCGACCTGTTGTCCGCCCTGTGGTTGAAACTGGATATGAGAATTTGTTGCTGGTGAGGTTGCTGTTGGAGATGAGATTGCCTTCAATTAGGAAATCTTCGGTTGCAGAAGGGCTCCTAGTTCAAGGAATATTGGAGAATTGGTCAAACCTCAAACCAGTCATCATGGAAGAATGGGGAGAGAATAGAGATGCTCTCATAGACCTTTTTGGAAAGGTTAGAGATCAATGGATGGATGAGGACTTAACAACTTGGATCGGTGCAAATAGTCCGAAAGTAGAAGTTTTAAAGCTGCTTCAAAAGATGCCTGAGCACCAAGGATTGAAGCTGCACTTTGTGGAAGATCGATTGGCCACTCTAAAGAATGTCATCAAAGAGCCAGAATTAGATGCGTGGAATATATATCTGGTGGACTGGGGATATAACACACAGAAAGAGAGAGAGGAAGCAGCTGCGATTCAAAGGATTCAACTTCTTCAGCTATCTGACTTCAGTACGAAGCTCAAGTAAGCACTTCATTGTTTCCAATTCATATTTATGTATCCTTTTTGCATATGAATGCTAATACTGATTATCTATTACATAATTTGAATTGATATTCATATTTGATAATTATCTTTTCGTTTACCC

Coding sequence (CDS)

ATGGGGGATCTCTACGCTTTGGACTTCGATGGAGTTCTCTGCGATAGCTGCGGAGAAAGCTCTCTTTCTGCTGTTAAGGCTGCTAAGGTAAGATGGCCTGACTTGTTCAACGATGTGGATTCGAGCTTGGAGAATTGGATTGTGGATCAGATGTACACAACATTCGAGAAAAAGAAGAAAAATGGCGATAACCGAGAGAAAATGAGGGGGCAGGAGTTTAAGCGACCTGTTGTCCGCCCTGTGGTTGAAACTGGATATGAGAATTTGTTGCTGGTGAGGTTGCTGTTGGAGATGAGATTGCCTTCAATTAGGAAATCTTCGGTTGCAGAAGGGCTCCTAGTTCAAGGAATATTGGAGAATTGGTCAAACCTCAAACCAGTCATCATGGAAGAATGGGGAGAGAATAGAGATGCTCTCATAGACCTTTTTGGAAAGGTTAGAGATCAATGGATGGATGAGGACTTAACAACTTGGATCGGTGCAAATAGTCCGAAAGTAGAAGTTTTAAAGCTGCTTCAAAAGATGCCTGAGCACCAAGGATTGAAGCTGCACTTTGTGGAAGATCGATTGGCCACTCTAAAGAATGTCATCAAAGAGCCAGAATTAGATGCGTGGAATATATATCTGGTGGACTGGGGATATAACACACAGAAAGAGAGAGAGGAAGCAGCTGCGATTCAAAGGATTCAACTTCTTCAGCTATCTGACTTCAGTACGAAGCTCAAGTAA

Protein sequence

MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFNDVDSSLENWIVDQMYTTFEKKKKNGDNREKMRGQEFKRPVVRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLLVQGILENWSNLKPVIMEEWGENRDALIDLFGKVRDQWMDEDLTTWIGANSPKVEVLKLLQKMPEHQGLKLHFVEDRLATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK

Homology

[Close]

BLAST of CmoCh17G004170 vs. ExPASy TrEMBL
Match: A0A6J1H4M1 (uncharacterized protein LOC111460350 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460350 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 5.0e-110
Identity = 217/292 (74.32%), Postives = 217/292 (74.32%), Query Frame = 0


Query: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFNDVDSSLENWIVDQMYTTFEKKKK 60
           MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFNDVDSSLENWIVDQMYT       
Sbjct: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFNDVDSSLENWIVDQMYT------- 60

Query: 61  NGDNREKMRGQEFKRPVVRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLLVQGILEN 120
                            VRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLLVQGILEN
Sbjct: 61  -----------------VRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLLVQGILEN 120

Query: 121 WSNLKPVIMEEWGENRDALIDLFGKVRDQWMDEDLTTWIGAN------------------ 180
           WSNLKPVIMEEWGENRDALIDLFGKVRDQWMDEDLTTWIGAN                  
Sbjct: 121 WSNLKPVIMEEWGENRDALIDLFGKVRDQWMDEDLTTWIGANRFYPGVSDALKFASSRIY 180

Query: 181 --------------------------------SPKVEVLKLLQKMPEHQGLKLHFVEDRL 240
                                            PKVEVLKLLQKMPEHQGLKLHFVEDRL
Sbjct: 181 IVTTKQGRFADALLRELAGVAIPPERIYGLGTGPKVEVLKLLQKMPEHQGLKLHFVEDRL 240

Query: 241 ATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK 243
           ATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK
Sbjct: 241 ATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK 268

[Close]

BLAST of CmoCh17G004170 vs. ExPASy TrEMBL
Match: A0A6J1KYA6 (uncharacterized protein LOC111499303 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499303 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.5e-109
Identity = 215/292 (73.63%), Postives = 217/292 (74.32%), Query Frame = 0


Query: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFNDVDSSLENWIVDQMYTTFEKKKK 60
           MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWP+LFNDVDSSLENWIVDQMYT       
Sbjct: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPELFNDVDSSLENWIVDQMYT------- 60

Query: 61  NGDNREKMRGQEFKRPVVRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLLVQGILEN 120
                            VRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGL+VQGILEN
Sbjct: 61  -----------------VRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLIVQGILEN 120

Query: 121 WSNLKPVIMEEWGENRDALIDLFGKVRDQWMDEDLTTWIGAN------------------ 180
           WSNLKPVIMEEWGENRDALIDLFGKVRDQWMDEDLTTWIGAN                  
Sbjct: 121 WSNLKPVIMEEWGENRDALIDLFGKVRDQWMDEDLTTWIGANRFYPGVSDALKFASSRIY 180

Query: 181 --------------------------------SPKVEVLKLLQKMPEHQGLKLHFVEDRL 240
                                            PKVEVLKLLQKMPEHQGLKLHFVEDRL
Sbjct: 181 IVTTKQGRFADALLRELAGVAIPPERIYGLGTGPKVEVLKLLQKMPEHQGLKLHFVEDRL 240

Query: 241 ATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK 243
           ATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK
Sbjct: 241 ATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK 268

[Close]

BLAST of CmoCh17G004170 vs. ExPASy TrEMBL
Match: A0A5D3BTH5 (Ribosomal RNA small subunit methyltransferase G OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001160 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.2e-103
Identity = 208/293 (70.99%), Postives = 211/293 (72.01%), Query Frame = 0


Query: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFNDVDSSLENWIVDQMYTTFEKKKK 60
           MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWP LF+DVDSSLENWIVDQMYT       
Sbjct: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDDVDSSLENWIVDQMYT------- 60

Query: 61  NGDNREKMRGQEFKRPVVRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLLVQGILEN 120
                            VRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGL V GILEN
Sbjct: 61  -----------------VRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLTVHGILEN 120

Query: 121 WSNLKPVIMEEWGE-NRDALIDLFGKVRDQWMDEDLTTWIGAN----------------- 180
           WS LKPVIMEEWGE NRDALIDLFGKVRDQW+DEDL TWIGAN                 
Sbjct: 121 WSKLKPVIMEEWGEKNRDALIDLFGKVRDQWIDEDLATWIGANRFYPGVSDALKFASSRI 180

Query: 181 ---------------------------------SPKVEVLKLLQKMPEHQGLKLHFVEDR 240
                                             PKVEVLK+LQKMPEHQGLKLHFVEDR
Sbjct: 181 YIVTTKQGRFAEALLRELAGVTIPPERIYGLGTGPKVEVLKMLQKMPEHQGLKLHFVEDR 240

Query: 241 LATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK 243
           LATLKNVIKEPELD WNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK
Sbjct: 241 LATLKNVIKEPELDGWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK 269

[Close]

BLAST of CmoCh17G004170 vs. ExPASy TrEMBL
Match: A0A1S3C7X7 (uncharacterized protein LOC103497707 OS=Cucumis melo OX=3656 GN=LOC103497707 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.2e-103
Identity = 208/293 (70.99%), Postives = 211/293 (72.01%), Query Frame = 0


Query: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFNDVDSSLENWIVDQMYTTFEKKKK 60
           MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWP LF+DVDSSLENWIVDQMYT       
Sbjct: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDDVDSSLENWIVDQMYT------- 60

Query: 61  NGDNREKMRGQEFKRPVVRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLLVQGILEN 120
                            VRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGL V GILEN
Sbjct: 61  -----------------VRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLTVHGILEN 120

Query: 121 WSNLKPVIMEEWGE-NRDALIDLFGKVRDQWMDEDLTTWIGAN----------------- 180
           WS LKPVIMEEWGE NRDALIDLFGKVRDQW+DEDL TWIGAN                 
Sbjct: 121 WSKLKPVIMEEWGEKNRDALIDLFGKVRDQWIDEDLATWIGANRFYPGVSDALKFASSRI 180

Query: 181 ---------------------------------SPKVEVLKLLQKMPEHQGLKLHFVEDR 240
                                             PKVEVLK+LQKMPEHQGLKLHFVEDR
Sbjct: 181 YIVTTKQGRFAEALLRELAGVTIPPERIYGLGTGPKVEVLKMLQKMPEHQGLKLHFVEDR 240

Query: 241 LATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK 243
           LATLKNVIKEPELD WNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK
Sbjct: 241 LATLKNVIKEPELDGWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK 269

[Close]

BLAST of CmoCh17G004170 vs. ExPASy TrEMBL
Match: A0A0A0K857 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G004590 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.0e-102
Identity = 204/292 (69.86%), Postives = 210/292 (71.92%), Query Frame = 0


Query: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFNDVDSSLENWIVDQMYTTFEKKKK 60
           MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWP LF++V+SSLENWIVDQMYT       
Sbjct: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDEVESSLENWIVDQMYT------- 60

Query: 61  NGDNREKMRGQEFKRPVVRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLLVQGILEN 120
                            VRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGL V GILEN
Sbjct: 61  -----------------VRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLTVHGILEN 120

Query: 121 WSNLKPVIMEEWGENRDALIDLFGKVRDQWMDEDLTTWIGAN------------------ 180
           WS LKPVIMEEWGENRDALIDLFGKVRDQW+DEDL TWIGAN                  
Sbjct: 121 WSKLKPVIMEEWGENRDALIDLFGKVRDQWIDEDLATWIGANRFYPGVSDALKFASSRIY 180

Query: 181 --------------------------------SPKVEVLKLLQKMPEHQGLKLHFVEDRL 240
                                            PKVEVLK+LQKMPEHQGLKLHFVEDRL
Sbjct: 181 IVTTKQGRFADALLRELAGVTIPPERIYGLGTGPKVEVLKMLQKMPEHQGLKLHFVEDRL 240

Query: 241 ATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK 243
           ATLKNVIKE ELD WNIYLVDWGYNTQKEREEAAAI+RIQLLQLSDFSTKLK
Sbjct: 241 ATLKNVIKESELDGWNIYLVDWGYNTQKEREEAAAIKRIQLLQLSDFSTKLK 268

[Close]

BLAST of CmoCh17G004170 vs. TAIR 10
Match: AT2G45990.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 312 Blast hits to 312 proteins in 90 species: Archae - 0; Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). )

HSP 1 Score: 334.7 bits (857), Expect = 6.1e-92
Identity = 177/292 (60.62%), Postives = 195/292 (66.78%), Query Frame = 0


Query: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFNDVDSSLENWIVDQMYTTFEKKKK 60
           MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLF  VDS+LE WIVDQM+        
Sbjct: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFEGVDSALEEWIVDQMH-------- 60

Query: 61  NGDNREKMRGQEFKRPVVRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLLVQGILEN 120
                           +VRPVVETGYENLLLVRLLLE ++PSIRKSSVAEGL V GILE+
Sbjct: 61  ----------------IVRPVVETGYENLLLVRLLLETKIPSIRKSSVAEGLTVDGILES 120

Query: 121 WSNLKPVIMEEWGENRDALIDLFGKVRDQWMDEDLTTWIGAN------------------ 180
           W+  KPVIME W E+RDAL+DLFGKVRD W+++DLTTWIGAN                  
Sbjct: 121 WAKFKPVIMEAWDEDRDALVDLFGKVRDDWINKDLTTWIGANRFYPGVSDALKFASSKIY 180

Query: 181 --------------------------------SPKVEVLKLLQKMPEHQGLKLHFVEDRL 240
                                            PKVEVLKLLQ  PEHQGL LHFVEDRL
Sbjct: 181 IVTTKQGRFAEALLREIAGVIIPSERIYGLGSGPKVEVLKLLQDKPEHQGLTLHFVEDRL 240

Query: 241 ATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK 243
           ATLKNVIKEPELD W++YL  WGYNT+KER EAA I RIQ+++LS FS KLK
Sbjct: 241 ATLKNVIKEPELDKWSLYLGTWGYNTEKERAEAAGIPRIQVIELSTFSNKLK 268

[Close]

BLAST of CmoCh17G004170 vs. TAIR 10
Match: AT2G45990.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 312 Blast hits to 312 proteins in 90 species: Archae - 0; Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). )

HSP 1 Score: 334.7 bits (857), Expect = 6.1e-92
Identity = 177/292 (60.62%), Postives = 195/292 (66.78%), Query Frame = 0


Query: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFNDVDSSLENWIVDQMYTTFEKKKK 60
           MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLF  VDS+LE WIVDQM+        
Sbjct: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFEGVDSALEEWIVDQMH-------- 60

Query: 61  NGDNREKMRGQEFKRPVVRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLLVQGILEN 120
                           +VRPVVETGYENLLLVRLLLE ++PSIRKSSVAEGL V GILE+
Sbjct: 61  ----------------IVRPVVETGYENLLLVRLLLETKIPSIRKSSVAEGLTVDGILES 120

Query: 121 WSNLKPVIMEEWGENRDALIDLFGKVRDQWMDEDLTTWIGAN------------------ 180
           W+  KPVIME W E+RDAL+DLFGKVRD W+++DLTTWIGAN                  
Sbjct: 121 WAKFKPVIMEAWDEDRDALVDLFGKVRDDWINKDLTTWIGANRFYPGVSDALKFASSKIY 180

Query: 181 --------------------------------SPKVEVLKLLQKMPEHQGLKLHFVEDRL 240
                                            PKVEVLKLLQ  PEHQGL LHFVEDRL
Sbjct: 181 IVTTKQGRFAEALLREIAGVIIPSERIYGLGSGPKVEVLKLLQDKPEHQGLTLHFVEDRL 240

Query: 241 ATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK 243
           ATLKNVIKEPELD W++YL  WGYNT+KER EAA I RIQ+++LS FS KLK
Sbjct: 241 ATLKNVIKEPELDKWSLYLGTWGYNTEKERAEAAGIPRIQVIELSTFSNKLK 268

[Close]

BLAST of CmoCh17G004170 vs. TAIR 10
Match: AT2G45990.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 315.5 bits (807), Expect = 3.8e-86
Identity = 171/292 (58.56%), Postives = 190/292 (65.07%), Query Frame = 0


Query: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFNDVDSSLENWIVDQMYTTFEKKKK 60
           MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLF  VDS+LE WIVDQM+        
Sbjct: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFEGVDSALEEWIVDQMH-------- 60

Query: 61  NGDNREKMRGQEFKRPVVRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLLVQGILEN 120
                           +VRPVVETGYENLLLVRLLLE ++PSIRKSSVAEGL V GILE+
Sbjct: 61  ----------------IVRPVVETGYENLLLVRLLLETKIPSIRKSSVAEGLTVDGILES 120

Query: 121 WSNLKPVIMEEWGENRDALIDLFGKVRDQWMDEDLTTWIGAN------------------ 180
           W+  KPVIME W E+RDAL+DLFGKVRD W+++DLTTWIGAN                  
Sbjct: 121 WAKFKPVIMEAWDEDRDALVDLFGKVRDDWINKDLTTWIGANRFYPGVSDALKFASSKIY 180

Query: 181 --------------------------------SPKVEVLKLLQKMPEHQGLKLHFVEDRL 240
                                            PKVEVLKLLQ  PEHQGL L     +L
Sbjct: 181 IVTTKQGRFAEALLREIAGVIIPSERIYGLGSGPKVEVLKLLQDKPEHQGLTL-----QL 240

Query: 241 ATLKNVIKEPELDAWNIYLVDWGYNTQKEREEAAAIQRIQLLQLSDFSTKLK 243
           ATLKNVIKEPELD W++YL  WGYNT+KER EAA I RIQ+++LS FS KLK
Sbjct: 241 ATLKNVIKEPELDKWSLYLGTWGYNTEKERAEAAGIPRIQVIELSTFSNKLK 263

[Close]

BLAST of CmoCh17G004170 vs. TAIR 10
Match: AT2G45990.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 241.1 bits (614), Expect = 9.1e-64
Identity = 132/233 (56.65%), Postives = 144/233 (61.80%), Query Frame = 0


Query: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFNDVDSSLENWIVDQMYTTFEKKKK 60
           MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLF  VDS+LE WIVDQM+        
Sbjct: 1   MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFEGVDSALEEWIVDQMH-------- 60

Query: 61  NGDNREKMRGQEFKRPVVRPVVETGYENLLLVRLLLEMRLPSIRKSSVAEGLLVQGILEN 120
                           +VRPVVETGYENLLLVRLLLE ++PSIRKSSVAEGL V GILE+
Sbjct: 61  ----------------IVRPVVETGYENLLLVRLLLETKIPSIRKSSVAEGLTVDGILES 120

Query: 121 WSNLKPVIMEEWGENRDALIDLFGKVRDQWMDEDLTTWIGAN------------------ 180
           W+  KPVIME W E+RDAL+DLFGKVRD W+++DLTTWIGAN                  
Sbjct: 121 WAKFKPVIMEAWDEDRDALVDLFGKVRDDWINKDLTTWIGANRFYPGVSDALKFASSKIY 180

Query: 181 --------------------------------SPKVEVLKLLQKMPEHQGLKL 184
                                            PKVEVLKLLQ  PEHQGL L
Sbjct: 181 IVTTKQGRFAEALLREIAGVIIPSERIYGLGSGPKVEVLKLLQDKPEHQGLTL 209

The following BLAST results are available for this feature:

BLAST of CmoCh17G004170 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh17G004170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H4M1	5.0e-110	74.32	uncharacterized protein LOC111460350 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KYA6	2.5e-109	73.63	uncharacterized protein LOC111499303 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5D3BTH5	1.2e-103	70.99	Ribosomal RNA small subunit methyltransferase G OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C7X7	1.2e-103	70.99	uncharacterized protein LOC103497707 OS=Cucumis melo OX=3656 GN=LOC103497707 PE=...	[more]
A0A0A0K857	1.0e-102	69.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G004590 PE=4 SV=1	[more]

BLAST of CmoCh17G004170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45990.1	6.1e-92	60.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G45990.2	6.1e-92	60.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G45990.3	3.8e-86	58.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G45990.4	9.1e-64	56.65	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15157	UV RADIATION RESISTANCE-ASSOCIATED GENE PROTEIN	coord: 165..242
None	No IPR available	PANTHER	PTHR15157:SF23	OS07G0418000 PROTEIN	coord: 165..242
None	No IPR available	PANTHER	PTHR15157:SF23	OS07G0418000 PROTEIN	coord: 2..163
None	No IPR available	PANTHER	PTHR15157	UV RADIATION RESISTANCE-ASSOCIATED GENE PROTEIN	coord: 2..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G004170.1	CmoCh17G004170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035493	SNARE complex assembly
cellular_component	GO:0005768	endosome
cellular_component	GO:0000323	lytic vacuole
molecular_function	GO:0000149	SNARE binding