CmoCh17G004080 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G004080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionBeta-amylase
LocationCmo_Chr17: 2708732 .. 2709750 (-)
RNA-Seq ExpressionCmoCh17G004080
SyntenyCmoCh17G004080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TACAAAACACGTGTGACCCACACGGGAACACGTCCCATCCACCCGCTTCACGTTCACTCGGTTATACCCTTACACGCCTCCTTCGTGCGTGCCAATTTTCCCAATTCTGAATCACCTCCACACGCGCGCGCGTGCGAAACCCTTCCCCTCGCATGCTCGCACGCTTGAGAATCAATCTCTCTCTCTCCCTCTCCCTCTCTCCTCTGTCGCCGGACTAGCGAGTCGCCGGTGAATTCTAGAATCCATGCTCCTTGATTCTTCTCCGGTCGGAACCAGACTGATCGACGGAAAGTTGTCTCTGGAGTACCTTGCCTTTCGCCGGAAAGGTTCCGTCATCTCCGCGCGAAACTTTTATGGTATTGTTGAAGATTTAGGTATTTGTTCATACGGATTTTTTTTTGAAGTAGTCGTTCTTGCAGAATTTGGTGCTGAGATTTGTAGGTGAAATTTTCGAAGGAATCAACTGGTTTGAGGTTCTAGACACGTGGTTTCTTTCTACTGGTGGAGATAAGACTTGGCGAAGAAAGGAAAATGAAATATGACGTTCTTGAGGTACTGTAGATTTCCTTTTTCCTTGTAGACTTTCGAGTTTTTCTGCTGGAATTTCAAGTTGCTTTTTAGCTACGGGAACCACTCCCCTGTATTGAATATGGAATCTCAGAAGTGAACTTTTTACGGTGTTTGTGGAGAATAGGATGAACATCGAACACTTTTTAGATGAAGTTTCAATGTTCCAAAGAAAATTAAACTAGTTTCGTACTTGTTCTGTCTCCTTGATACATTAAAGATGGCATATATTGAATATTCATGTACTAACTTGACTGAAAGTTGTGGAGATCTTGCAACTCTTGTAATTTTTTTGAATTTTAATTGGATGCTTTTATGATAACAGTTTGACATGTGACAGTTAATACCCAGTTTCATTTTGTTGCCAGAGTACTCTTTCCTGCTCGATTTGCAAAGAAGTTCATGTACATAGTAGTAGTGGTAACATATGGAGCGTGTTATCTGGACGTTAA

mRNA sequence

TACAAAACACGTGTGACCCACACGGGAACACGTCCCATCCACCCGCTTCACGTTCACTCGGTTATACCCTTACACGCCTCCTTCGTGCGTGCCAATTTTCCCAATTCTGAATCACCTCCACACGCGCGCGCGTGCGAAACCCTTCCCCTCGCATGCTCGCACGCTTGAGAATCAATCTCTCTCTCTCCCTCTCCCTCTCTCCTCTGTCGCCGGACTAGCGAGTCGCCGGTGAATTCTAGAATCCATGCTCCTTGATTCTTCTCCGGTCGGAACCAGACTGATCGACGGAAAGTTGTCTCTGGAGTACCTTGCCTTTCGCCGGAAAGAATTTGGTGCTGAGATTTGTAGACTTGGCGAAGAAAGGAAAATGAAATATGACGTTCTTGAGAGTACTCTTTCCTGCTCGATTTGCAAAGAAGTTCATGTACATAGTAGTAGTGGTAACATATGGAGCGTGTTATCTGGACGTTAA

Coding sequence (CDS)

ATGCTCCTTGATTCTTCTCCGGTCGGAACCAGACTGATCGACGGAAAGTTGTCTCTGGAGTACCTTGCCTTTCGCCGGAAAGAATTTGGTGCTGAGATTTGTAGACTTGGCGAAGAAAGGAAAATGAAATATGACGTTCTTGAGAGTACTCTTTCCTGCTCGATTTGCAAAGAAGTTCATGTACATAGTAGTAGTGGTAACATATGGAGCGTGTTATCTGGACGTTAA

Protein sequence

MLLDSSPVGTRLIDGKLSLEYLAFRRKEFGAEICRLGEERKMKYDVLESTLSCSICKEVHVHSSSGNIWSVLSGR
Homology
[Close]
BLAST of CmoCh17G004080 vs. ExPASy TrEMBL
Match: A0A6J1HI67 (Beta-amylase OS=Cucurbita moschata OX=3662 GN=LOC111464560 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-05
Identity = 38/86 (44.19%), Postives = 44/86 (51.16%), Query Frame = 0 

Query: 1  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------GAEIC--RLGEER---- 60
          M LDSSPV   L+DGK  L+YLAFR K F                E C    G  R    
Sbjct: 1  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSEISWFQALETCVPSAGAGRACAM 60

Query: 61 KMKYDVLESTLSCSICKEVHVHSSSG 67
          K+K DVL+ T SC +C+EV  HS SG
Sbjct: 61 KIKRDVLKCTFSCQLCREVQAHSGSG 86

[Close]
BLAST of CmoCh17G004080 vs. ExPASy TrEMBL
Match: A0A6J1HJC8 (Beta-amylase OS=Cucurbita moschata OX=3662 GN=LOC111464560 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 38/92 (41.30%), Postives = 44/92 (47.83%), Query Frame = 0 

Query: 1  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGE 60
          M LDSSPV   L+DGK  L+YLAFR K F                      E C    G 
Sbjct: 1  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSGFVGDLEISWFQALETCVPSAGA 60

Query: 61 ER----KMKYDVLESTLSCSICKEVHVHSSSG 67
           R    K+K DVL+ T SC +C+EV  HS SG
Sbjct: 61 GRACAMKIKRDVLKCTFSCQLCREVQAHSGSG 92

[Close]
BLAST of CmoCh17G004080 vs. ExPASy TrEMBL
Match: A0A6J1HLB5 (Beta-amylase OS=Cucurbita moschata OX=3662 GN=LOC111464560 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 38/92 (41.30%), Postives = 44/92 (47.83%), Query Frame = 0 

Query: 1  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGE 60
          M LDSSPV   L+DGK  L+YLAFR K F                      E C    G 
Sbjct: 1  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSGFVGDLEISWFQALETCVPSAGA 60

Query: 61 ER----KMKYDVLESTLSCSICKEVHVHSSSG 67
           R    K+K DVL+ T SC +C+EV  HS SG
Sbjct: 61 GRACAMKIKRDVLKCTFSCQLCREVQAHSGSG 92

[Close]
BLAST of CmoCh17G004080 vs. ExPASy TrEMBL
Match: A0A6J1HL80 (Beta-amylase OS=Cucurbita moschata OX=3662 GN=LOC111464560 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 38/92 (41.30%), Postives = 44/92 (47.83%), Query Frame = 0 

Query: 1  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGE 60
          M LDSSPV   L+DGK  L+YLAFR K F                      E C    G 
Sbjct: 1  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSGFVGDLEISWFQALETCVPSAGA 60

Query: 61 ER----KMKYDVLESTLSCSICKEVHVHSSSG 67
           R    K+K DVL+ T SC +C+EV  HS SG
Sbjct: 61 GRACAMKIKRDVLKCTFSCQLCREVQAHSGSG 92

The following BLAST results are available for this feature:
BLAST of CmoCh17G004080 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G004080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HI673.9e-0544.19Beta-amylase OS=Cucurbita moschata OX=3662 GN=LOC111464560 PE=3 SV=1[more]
A0A6J1HJC82.0e-0441.30Beta-amylase OS=Cucurbita moschata OX=3662 GN=LOC111464560 PE=3 SV=1[more]
A0A6J1HLB52.0e-0441.30Beta-amylase OS=Cucurbita moschata OX=3662 GN=LOC111464560 PE=3 SV=1[more]
A0A6J1HL802.0e-0441.30Beta-amylase OS=Cucurbita moschata OX=3662 GN=LOC111464560 PE=3 SV=1[more]
BLAST of CmoCh17G004080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G004080.1CmoCh17G004080.1mRNA