CmoCh17G003800 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCATTGAAAGCCCTAAACCTCGCGGAGAGAAATCTTTGGATGGCTACGAGCAACAACCTCCATGGCTCTGGTACTCCTCTTCCTTCCATGTTTCCTTTTCGTGGTTTCATGAAGTGTTATGTGGTGTGGATTTTTCAGAATTGAGTAATCCTTTATGAACAAGGAGGCACGTTTATTGATTTTCTCTTTTTTACTTCCTTTTAATTTCCTGTTTGCTGTCATATTACCAGAAATGTATGATCGTGAACCGAATTCACATCAGCAGGTTATTTAAGATGGACGACTTTTCTTGTTCTTAGTTGCGCTATAATTGTCTCTTTGAGATGAACCTTCTATTGTTTGTTGAAGTCTAAGAAGCGTATTGAGGATTTCTAGTATTGAGATAAAGTTATGAATTCTCTGTGTGCTCATAAACGAGGGGAGAAAAGTAGTTTAATTCTGTATGTTCGTCTTTTGGTACTGGTAAAAATTTTCGGAATTTCATTGAGTGGTTAAGTCTGCATAAGTTGGAGGCATCAAAGATTTGCGATACTTGGAGGTGGGTGCTCGAAATAACTTACCTTAACCCTCTTTTTGAAAACTTTTTTTGTTTGCTATAATTGTATTCAGGCCTTCCGGATTATATAAACTATAATGTATAGTTTTGGTTTTTTTCTTCTTTCCCTAACTAGCTGCTTAAATTTCGTAAGTACATCCTGTTTACTGTCTTTGTTTTTTTTTACAATACCTTCTTATAAAGAGTTCCTTCAATTTTCAATGTTACATTAGTTAATTTCCAGACCTTTAGGGATTTTGTTTTGACCTTCTTAATTATGTTTTCAATCTGTTCTGAGATGTGGAATTTATATTTTGAAGATAATTTCTCTTATGAGTAAGATTATTTGAGTGAACGAAAGTCATTGTTCTCCTTGAAATACTGGAAAGAAGAGTCTTGCTGTTGATTAGCGCTTTATCGTCTTTTGTTGTCTTCTGGTTATCTTTATTTGCTGGACCGTGTTAAGTGTTTAATTTCCATTAATACTTTATACTCCTTATCTCACTCGTTATCAAAGCATTAGTTGATCCTCTTTTATCAATTATCGATTCATGTATAGTAACACTAAATGCGAGGTTTGCAGCTTTTCCTATTTTTCCTCAGAAGGTTGACTTTTTTCATATTATATGTCAGATTCTGTGAATGAAATGCTAATGGAATCGGCTAAAGAAGGATCTGGTCATATGAGTTCAGAGGGAAAGCCCAATGACACAGGTGAGCATAGGAAGCGGACTATAAGTCGTTTATTGTTTTAATTCTTTTCGTTGCTATACATTTCTTTATTTGCATGTTAATTTATTGATTAAGAGGTATAATGATATTCTTCTTTATTATGCTAGAAATAAAAGCGCGTGTCGATGCCATGTGGGAGCAAATGAATAAAGGGGTGTCTAGTAAAACACTAAAAGGTTTGTCAACCAAACGAAGTCCAGTGGTGAATAAAAACTCAAAGAAACCATCCAATGTAAAAAATCACATTCTGCTCTTTCATGATGATGCAGCTCAAAATTTAGGAAAAATATCTCTTACTTTTTCTCTCTCCATCTTCCCCGTGTCTAGAATTGGATTGCATATCTAGGTATGGCGTCAAAGAAGATTGAACCTCAAGAAAAAGATACATTATCAGAAGGACCCAAGGTTCTGCAGGACAGTTCTATGGATGATGCTAAGATGCTTGCTGCTACTGCTCTCTCAGCTGTTAGGGATGCTACAGCTACCATTTCTGGCAGGGGGAAAGTTGAGGTGCCAATACTTTCATATATATTTTTATCTGTTTTTCTACCCTTTTAGGCGTGTGATTATCTAGGCATTTGGTTTTCTATTGTTACAAGACATATAGAGCTGAAGATGGATTTATCTATGTATGTCATTTGGTCAGTTGTTTGAATAATTGTTTAGATAATTTCTTCGTTGTTGGTAATGAAGGAGAACTTCCTTCTGTAATGATGCATGGGTAGGTAAGAAACACCCTTCTACTTCCATCTCTCTCTCTCTCTCTCTCTCGTCCTCCCTCTCCTTCTCCCTCTGTCCTTTTTTTGGTGATTTTTCTACCAAAAAATGTTTTGGTCTTTGATGCGTGGGAATAAGAAACTCATTCTTGGAGAATGGGTGTGAGAAGAAACTTACGGAAGGAGGAAAAGAGATTGCAGTTGTACTTGACTTGATTGATGAGATGAATCAAGGAAAGATAAAAAAGATTAAAAAGTGGATCTGTCTAGAACATTCTTGGTTAAATTTTTGGTGAAGCTACTTTACTGAAGGGTAGAAACTTGCTAGAAACTGAAAATCCTTAAGAAGTAATTGTTTTGTTGTGGATACTACAATTGGGTGGCATTAATACCACATATTAGTTGGTTAAAAGGTGTCCCCTGTTGCTTTTAGGAAAAAAAAAAGAAGAAAAAGGGTCCTGTTGCCTTAACCTTTCTACTGCATTTTTTGCATACAGGCAGGGAAGGATCAAACGTACTTGTCTGTCTTTCTACGCTCTTATGGCAGAAAACGTTGGGATAATTCTATGTATTTTGGTGTTTCATAGCGGTTGGAAAAGTTCCCTAACGAGGGTAACATATATGATATAACCTTAACCTCGTAGTATAAAGCTCAAAGCCAAAGCTAAATTGTTATGGAGTGCCATTAGATCAATCATTGGGAGGATTTGATTTGAAAGAAATCAAATTAGAGAAGTTTGTAGAATGGATGGAGAATGAATACTACAAAATATCAAGCCTCTTCTTGGTGTGGCCTGTCTATTGTACTTTGTAACCATACCTCCAATATAATTAAATTTTACTTCGGGGTTTTTCTTTATACAATGAGATTGGTCAGGCTTACATTTTCCTTAGTTCTGATAGTTGGGTGCTACTTTGTACTCTCCTAATAGGGAGTCTCAACTTCACAAGTATCACCAGAAAGTTGTTTACTGCTCAAAAAGTAAATATATTAATGACCCTGGTGTTAATTTTGAAAGCTTGGCTTGATTATATGACTACCTAGCCCGTCTATGGATAATCGTTACGTGTTTCTTCTGGAATTTAGGACTATAATTGTTGTGGTATCCCCTTTTCTTTGGTTAATTACTAGTTTTGGTGGGGAGGAGAATCAAAAGGTACGAGTCAAGATTTTACGACTTCATGGGTGAAGTTCGGTAAGTCGGGGCTTGGGTGGGATGTATGGGAGAGTCCTCCAAGAGGCTGATGGTCCTGATGTTTGATAACTGTACTTGCTTTATGATATCATCTCTTATAAAACCGTAAAACAGCTAGTTTTGCATTGTTTATGTTGATGATCTGTTAGTTGAAGAACTCAAACCATTGTCCTTTTACTTTAACAGATTACAGAGATTAGGGACTTCGCAGGCCAAAATGTTGAAATTAAGAAGTTTGTAGATGCTGATTCAAAGGAAGCATACGAGAAGATGAAGGCACCTGCTACTTCAGCTGTTGATGCAATCCTGGAACAAATCAAGAAGAAACAAAAGCTTAGTGTTCTTGACAAGACAAAAAAGGACTGGGGAGAGTTCAAGGAAGAAACCAAGGGGTTGGAAGAGGACTTGGATGCTTACAAGAAGAGCTCAAACCAGTATCTCGATAAAGTTTCGTTCTTGCAGCGAGCCGATTACAGGGAGTTTGAACGAGAGAGGGATGCACGGTTGGCTCTGCAGGCCAGGAGGAGGCCTGATATGCGAGAGGAGCCATGATTAATAAACCATCAAGAGAAGCAAGCTCTGTGGAGAATGTGCCGTAAGTATTAAGGTTGTTCTTGAATTTCTTGTGCGTATCACTTCCAATAGGCAGTACAGTCGGCTCGGATGATTTGGAAGTGAGTAATGGTTCATTGTGTGCCCATAGCGTATTCTGATATCTGCCTGACAAAAACTGCAAATCATGCTTCGATGTAAATCTTGGTCTCCTACCATCAGAAAGATTTCTTGTAGCACTTATCTTTCTTCTGTTGTTGTGTACACGGTTGTTACTCAACGGATTAAGGCATCTTTACCAATATGAGCATAGCTTAGCCGGTATAAAGTATGTGTTATCAACAAAAAGATCAGAGGTTTGAATTTTTATCTCTCATATTATTGAGCTAAAGAAATGATATTTATTTACCATGCAAGGTAGAGATGTTTATTGAAGCTGTAGAATAGGGCTCGTAGAAACGGAGAATGATAATGAGGGAGGAAATGGAGAAAGATTTATCCTTGTTAGCTAGATAGGTCTTGTACTACCAGTTTGGAGGGAAGAGAATTAAAA TTTCATTGAAAGCCCTAAACCTCGCGGAGAGAAATCTTTGGATGGCTACGAGCAACAACCTCCATGGCTCTGATTCTGTGAATGAAATGCTAATGGAATCGGCTAAAGAAGGATCTGGTCATATGAGTTCAGAGGGAAAGCCCAATGACACAGAAATAAAAGCGCGTGTCGATGCCATGTGGGAGCAAATGAATAAAGGGGTGTCTAGTAAAACACTAAAAGGTTTGTCAACCAAACGAAGTCCAGTGGTGAATAAAAACTCAAAGAAACCATCCAATAATTGGATTGCATATCTAGGTATGGCGTCAAAGAAGATTGAACCTCAAGAAAAAGATACATTATCAGAAGGACCCAAGGTTCTGCAGGACAGTTCTATGGATGATGCTAAGATGCTTGCTGCTACTGCTCTCTCAGCTGTTAGGGATGCTACAGCTACCATTTCTGGCAGGGGGAAAGTTGAGATTACAGAGATTAGGGACTTCGCAGGCCAAAATGTTGAAATTAAGAAGTTTGTAGATGCTGATTCAAAGGAAGCATACGAGAAGATGAAGGCACCTGCTACTTCAGCTGTTGATGCAATCCTGGAACAAATCAAGAAGAAACAAAAGCTTAGTGTTCTTGACAAGACAAAAAAGGACTGGGGAGAGTTCAAGGAAGAAACCAAGGGGTTGGAAGAGGACTTGGATGCTTACAAGAAGAGCTCAAACCAGTATCTCGATAAAGTTTCGTTCTTGCAGCGAGCCGATTACAGGGAGTTTGAACGAGAGAGGGATGCACGGTTGGCTCTGCAGGCCAGGAGGAGGCCTGATATGCGAGAGGAGCCATGATTAATAAACCATCAAGAGAAGCAAGCTCTGTGGAGAATGTGCCGTAAGTATTAAGGTTGTTCTTGAATTTCTTGTGCGTATCACTTCCAATAGGCAGTACAGTCGGCTCGGATGATTTGGAAGTGAGTAATGGTTCATTGTGTGCCCATAGCGTATTCTGATATCTGCCTGACAAAAACTGCAAATCATGCTTCGATGTAAATCTTGGTCTCCTACCATCAGAAAGATTTCTTGTAGCACTTATCTTTCTTCTGTTGTTGTGTACACGGTTGTTACTCAACGGATTAAGGCATCTTTACCAATATGAGCATAGCTTAGCCGGTATAAAGTATGTGTTATCAACAAAAAGATCAGAGGTTTGAATTTTTATCTCTCATATTATTGAGCTAAAGAAATGATATTTATTTACCATGCAAGGTAGAGATGTTTATTGAAGCTGTAGAATAGGGCTCGTAGAAACGGAGAATGATAATGAGGGAGGAAATGGAGAAAGATTTATCCTTGTTAGCTAGATAGGTCTTGTACTACCAGTTTGGAGGGAAGAGAATTAAAA ATGGCTACGAGCAACAACCTCCATGGCTCTGATTCTGTGAATGAAATGCTAATGGAATCGGCTAAAGAAGGATCTGGTCATATGAGTTCAGAGGGAAAGCCCAATGACACAGAAATAAAAGCGCGTGTCGATGCCATGTGGGAGCAAATGAATAAAGGGGTGTCTAGTAAAACACTAAAAGGTTTGTCAACCAAACGAAGTCCAGTGGTGAATAAAAACTCAAAGAAACCATCCAATAATTGGATTGCATATCTAGGTATGGCGTCAAAGAAGATTGAACCTCAAGAAAAAGATACATTATCAGAAGGACCCAAGGTTCTGCAGGACAGTTCTATGGATGATGCTAAGATGCTTGCTGCTACTGCTCTCTCAGCTGTTAGGGATGCTACAGCTACCATTTCTGGCAGGGGGAAAGTTGAGATTACAGAGATTAGGGACTTCGCAGGCCAAAATGTTGAAATTAAGAAGTTTGTAGATGCTGATTCAAAGGAAGCATACGAGAAGATGAAGGCACCTGCTACTTCAGCTGTTGATGCAATCCTGGAACAAATCAAGAAGAAACAAAAGCTTAGTGTTCTTGACAAGACAAAAAAGGACTGGGGAGAGTTCAAGGAAGAAACCAAGGGGTTGGAAGAGGACTTGGATGCTTACAAGAAGAGCTCAAACCAGTATCTCGATAAAGTTTCGTTCTTGCAGCGAGCCGATTACAGGGAGTTTGAACGAGAGAGGGATGCACGGTTGGCTCTGCAGGCCAGGAGGAGGCCTGATATGCGAGAGGAGCCATGA MATSNNLHGSDSVNEMLMESAKEGSGHMSSEGKPNDTEIKARVDAMWEQMNKGVSSKTLKGLSTKRSPVVNKNSKKPSNNWIAYLGMASKKIEPQEKDTLSEGPKVLQDSSMDDAKMLAATALSAVRDATATISGRGKVEITEIRDFAGQNVEIKKFVDADSKEAYEKMKAPATSAVDAILEQIKKKQKLSVLDKTKKDWGEFKEETKGLEEDLDAYKKSSNQYLDKVSFLQRADYREFERERDARLALQARRRPDMREEP Homology
BLAST of CmoCh17G003800 vs. ExPASy Swiss-Prot
Match: Q75QI0 (Craniofacial development protein 1 OS=Gallus gallus OX=9031 GN=CFDP1 PE=2 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 5.3e-14 Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = 0
BLAST of CmoCh17G003800 vs. ExPASy Swiss-Prot
Match: O88271 (Craniofacial development protein 1 OS=Mus musculus OX=10090 GN=Cfdp1 PE=1 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 4.5e-13 Identity = 66/204 (32.35%), Postives = 104/204 (50.98%), Query Frame = 0
BLAST of CmoCh17G003800 vs. ExPASy Swiss-Prot
Match: Q75UQ2 (Craniofacial development protein 1 OS=Rattus norvegicus OX=10116 GN=Cfdp1 PE=1 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.0e-12 Identity = 64/198 (32.32%), Postives = 100/198 (50.51%), Query Frame = 0
BLAST of CmoCh17G003800 vs. ExPASy Swiss-Prot
Match: Q9UEE9 (Craniofacial development protein 1 OS=Homo sapiens OX=9606 GN=CFDP1 PE=1 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.9e-12 Identity = 74/255 (29.02%), Postives = 119/255 (46.67%), Query Frame = 0
BLAST of CmoCh17G003800 vs. ExPASy Swiss-Prot
Match: Q8HXY9 (Craniofacial development protein 1 OS=Bos taurus OX=9913 GN=CFDP1 PE=2 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 8.5e-12 Identity = 81/254 (31.89%), Postives = 120/254 (47.24%), Query Frame = 0
BLAST of CmoCh17G003800 vs. ExPASy TrEMBL
Match: A0A6J1H4U3 (craniofacial development protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460409 PE=4 SV=1) HSP 1 Score: 487.3 bits (1253), Expect = 4.1e-134 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
BLAST of CmoCh17G003800 vs. ExPASy TrEMBL
Match: A0A6J1KYB0 (craniofacial development protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499305 PE=4 SV=1) HSP 1 Score: 482.6 bits (1241), Expect = 1.0e-132 Identity = 258/261 (98.85%), Postives = 261/261 (100.00%), Query Frame = 0
BLAST of CmoCh17G003800 vs. ExPASy TrEMBL
Match: A0A6J1L2Q7 (craniofacial development protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499305 PE=4 SV=1) HSP 1 Score: 467.6 bits (1202), Expect = 3.4e-128 Identity = 250/256 (97.66%), Postives = 254/256 (99.22%), Query Frame = 0
BLAST of CmoCh17G003800 vs. ExPASy TrEMBL
Match: A0A6J1H5W9 (craniofacial development protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460409 PE=4 SV=1) HSP 1 Score: 459.9 bits (1182), Expect = 7.0e-126 Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
BLAST of CmoCh17G003800 vs. ExPASy TrEMBL
Match: A0A6J1KWE6 (craniofacial development protein 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111499305 PE=4 SV=1) HSP 1 Score: 455.3 bits (1170), Expect = 1.7e-124 Identity = 243/246 (98.78%), Postives = 246/246 (100.00%), Query Frame = 0
BLAST of CmoCh17G003800 vs. TAIR 10
Match: AT5G30490.1 (CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). ) HSP 1 Score: 214.9 bits (546), Expect = 7.6e-56 Identity = 135/244 (55.33%), Postives = 177/244 (72.54%), Query Frame = 0
BLAST of CmoCh17G003800 vs. TAIR 10
Match: AT5G30490.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). ) HSP 1 Score: 214.9 bits (546), Expect = 7.6e-56 Identity = 135/244 (55.33%), Postives = 177/244 (72.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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