CmoCh17G003780 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G003780
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description30S ribosomal protein S1, chloroplastic
LocationCmo_Chr17: 2341369 .. 2345896 (+)
RNA-Seq ExpressionCmoCh17G003780
SyntenyCmoCh17G003780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAATTTCTCGCCGGAGCAGAAGATCAGGCGAGGGGATATGAGCTCATTGGCGCATCAACTTTGTGGATTGAGGAGTTCCCCTCTTTCTTCAACGCCGATTTCAACTCGGAAGCGTTTTTCTCCGGTAGTTTCTGCTGCAGCTTCCCCTACTCCCATTTCCAATGCGCAGACCAAAGAGCGCCTTAAGCTCAAGCAACTCTTCAAGGAAGCTTATGAACGTTGCTGTATTACCCCCATGGATGGCGTCTCCTTCACGCTTGAGGACTTCCATGCTGCTCTTGCGAATTACGACTTCGTTTCGGAACTCGGAACCAAGGTTAATCTGCTATTCCAGTTTCTTTCTTCTTCGTTTAGGTGTTTGTTGTTTTCAATCGAGGATAATTTTCTGTTCGATTTCCCGAACTGCGCGCTGCCAATTCTCATGCATTTTTATCTAAAACTTCGTAGCGGAAATCATCGCTTTTACAAAATCACTTTTATCGTTATTTATGTAAAGGCGACTAGGAAATAATGGAATTATACGCCTTTGTTCGTTTTAGGGTACTGCTTGTCATGTACGAGGTTATGATTATTGAGCATTCCGTTGTTGAATTTTGAGCATAGATCGAGAAAAGTATAATTACGTGACTGGATTTGCGAAGAATTGTATTTCTGGAAGATTTTCTTTCGTTCGGTGGTTGTAATATCTCTATACACCAAATGTCATCAATCATTCCCAATTTCAAGAAACGTTCATCCTTAAGCGTACTAAGTTCGGGAGTTTTCAATAGTTCCACAGAGCAAAAGTTGATTACAGAAAGAATTGGGCTAAACATTTCGAAAATTTGTGTTTTACAGCTGCAACTATGCAACTATTTAACTACCTATCAGTTTATAGCCACCACAAATAAACCAGCTTTGATAGGTAAACGTTAACCGACTAACTTTTTGGCTCCATTATCAGATAACTAACATAAATCTGTGTGTCATTAATTTCCTTGATGTTTGCTCATGCAGCTCATGAGCTAACGGATAACAGTTAGCTTCTCAATAAGTTCAAGTTATTGACTTTTACCAGTGTCTTGTATTCTCAGGTGAAAGGTACTGTATTCTCTACCGATGCTAATGGGGCACTAGTTGATACTTCTGCAAAGGGAACTGCATACTTGCCCACCCAAGAAGCATGCATTTTTAATATAAGACATGTAGAAGAAGCAGGCATATATCCTGGTTTAGAAGAGGAGTTTGTAATTATTGGTGAACAGGAACAGGAAGATGACGGCAGCCTAATTCTGAGCTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTTCAAGCTGAGGATTTTGTTATCAAGGGTAAGGTGGGTTCTGCAAGATATATCTTGCTTTTGTAATTTCATTTTTTCCTTATATTGTTGGTTCAGATCTTTCAATCTTGTTATGCCAGTAATATTCATGAGACCATTGCCACGGCTTTTCTTGAACCGGATTTATGTCATACAATTGTGTTGATGAATTTTGAAGTAGTATTCATGTGACAATTGCCATTCATCTCTTTGAAGCTTCTTAAGTTCATAACCTAGTTGCAGGGCGGAGGCAACTAATGTTTTATCATCTTTGTCAACCACTACAAACATGTTTTATGTAATATTAATCATCCTTGTCATTCACGGAATAATTTAAGATTTTGAACTTGTTTTCACCATTTTCTACTTCCTCTATATCTTCTTTTTTCTCAGAAAAAGATCTTTAAATGCAGGTTGTTGATGGAAACAAAGGGGGAGTAGTTGTTCTTGTGGAAGGCCTTAAAGGATTTGTTCCTTTCTCTCAAATATCAGCAGTATGTTCACTAAACTGACATTCTTTCTGCTGACTTCTAATTCTCTAGCTGACTTTATTTTTAAACTTTTATTATTTTTACATTGCTGTCATACTGAAAGCCCATACACGTTTATGTGATTATATGATTAGATGCTCATGTTTCAGACCATTAAAGACCATGATTTGATTTTTCCTCACAGCTCACGAATTTATCTTGTATTATTATTTCTGTATTCTTTCATTCAATGCTCGTTACTTTTGCTCATTATATTCTTCGTCAGTTTAAGCTCATAAATTTTTGGTTCTTACTCAATTGCATACTGTGCTATGCATCTCTTTTTTCTTGTCGATTTATCAGAAATCAACTGCAGAGGAGCTGCTTAATAAAGAGCTACTTCTGAAGTTTGTGGAGGTTGATGAAAAACTATATCGGCTAATCCTAAGTAATTCCAAGGCAATTGTCAGTAGCCAGTCAGAGCTAAGAATTGGGTCAGTAGTTACTGGAATTGTGCAGATTCTGAAACCATATGGAGCCTTCGTTGACATCGGTGGAGTTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATACCAGATATTGCAGCCGTTCTTCAACCAGGAGATATGCTAAAGGTATTTCATTGTCAATGAGAGCTTGATGGAGGTCTTCATCAGTGTACAGCCTTAAACACATTGAAATTATTTTTTATGGTTGTAGGTCATGATTTTGAGCTATGACCGCGATCGAGGCCGTATTAGTCTTTCTACCAAGAAACTGGAACCTTCTCCTGGAGACATGCTTCACAATCCAAAGCTTGTTTTTGAGAAGGTATTTCTTTTGCACTTTACTCTTCTTACTATTATGATGTGCATTGCTTTTATTTTCAGAGTGTATTCCTTTTGTACTTCCCAATTCCAGTCGTCTTTTTCCCTCTCCTTACAGGTTAACCCCTAGCATGACTACAACCTTTATAGCTTGTATTTTCTTGAATCTCTTTTTCCCAAACTTACTGAAATAGAGTAGAAGTTTCTTATCTTTTGTATACAATTTTAGGCGGACGAGATGGCTCAGACATTCAGGCAAAGAATAGCACAAGCAGAAGCAATGGCTCGTGCAGAGCTTCTCGAATTTCAGCCTGAGGTACTTCTTTCCCTGCCTTGGATTTTTCAACTCAATTCATGAATGGGAATTGAAAACTTTAGAACGTAATTAACTCCTCAATGCCAGAGTAGATAATGGATTGACTCAGCTTCGATGGGGTATTGAGTAGACATACCCCTGAGTTGCCTGCAGAGGTTGTAGATATCACTTTTGTTTGTTTCCCCCAAAGAATAACAACGAGGAGTTATTATTCCTTGCTTCTCTCAAGTTAATAATTCCACAGTTAATTTAAAAATTTTGGACTTAATCTTATAAAACGTGCTGCCCTTCCAAAGTTATAGGGTACATAGTCGACACTTTCTGGGCTTTGACCTTGCCTGACTCACTACTATATTTTTCCAACGCCCAAATACCATGAAAAAAAAAATCCACAAATGAACTAACTAGGTTCGGATGGTCAATCTTATCATCAAGTATCATTTTCCTGATTCACAATCCAATTCAATTCTTCAGTGCTCACTCTCTGGTCCTAGAAGCTTTATTACAAATTAGACCAGCAGATGAATGAAAAATCTTTCTTTTCTCATCTCTGATGTGCTAATTCAACTGGCGAGATTTGTTGTAGGACACATTTCTAGTACTCCTTTAGTACCATACTGCCATTTATCTTTAGCAACATCATTATTTAATGATATGCTATATTGTTTCTTAGGTCCATGTTATTTTTGAATGCTGATGATGCGATTAGGATGATTGATGTTCGATCTACCTCAGTTTTGCATCAGTTTACCCACTTGCTGAAACCTCCCTCCGTAGTCAATTTTAACAGTTATGAATAATGAAACATGATAAAGAGTAAACCTTGTAGTCACGTATTACTAGACTTCCTCTATCCCACTCTCCTCCCTATCTCTCTCGACCCATCCACCAGAGTATGTTGGGCTGGAATGCTTCTATTCCTATCCCATCCTTGATTTACTCTTGTAGTCTTACAAAATTTTCCTCTATTAACAGTGTAAAACAATGTTTACATGGATAATTTCGTTTCGATATTAATCCTCCTTTAGTTGCATGATCCTTTCAACTAGTTAGTGTATAGAAAGCTAGCTCAATTTGAGCATTTCTTTCAACTACAGCCAAGGACACCTTTAAATTTCAATAAGAACTTTTTTAGTTGTTACTTGATTTCCATTTCCATTTATGATCATCATTACTCTTGTCATATACAGTTTGAAACTGGATCTGGATCATCTTCTATTGTTTTCAGTTTAGTCATAATTTCTTGTTTCTTTGAGGCTTTTTTGCACTTCTGATCTTGAATTAGTAATTGCCTGTAACTTTTGTTGGCAGAATTCATAGATGAAAGAGTGATTCTGGCGATTTATGATGGCCATCCTTCACAATGAGCCTCTCAATTACAAGGTATTGGCACTTTGAACTGGAATAATTGATTGTATTTATTATATTATGCTAGATACTTTATTTTTAATTTTCTTCGGGTCTCGTTTGATAATCATTTGGTTTTTAGAAATCAACCTGATAGATGCTACTTCACGTGTAAAATTGTTGGTTTTTAGATGCTATTTTTGCAACGTTTTCGAA

mRNA sequence

ACAAATTTCTCGCCGGAGCAGAAGATCAGGCGAGGGGATATGAGCTCATTGGCGCATCAACTTTGTGGATTGAGGAGTTCCCCTCTTTCTTCAACGCCGATTTCAACTCGGAAGCGTTTTTCTCCGGTAGTTTCTGCTGCAGCTTCCCCTACTCCCATTTCCAATGCGCAGACCAAAGAGCGCCTTAAGCTCAAGCAACTCTTCAAGGAAGCTTATGAACGTTGCTGTATTACCCCCATGGATGGCGTCTCCTTCACGCTTGAGGACTTCCATGCTGCTCTTGCGAATTACGACTTCGTTTCGGAACTCGGAACCAAGGTGAAAGGTACTGTATTCTCTACCGATGCTAATGGGGCACTAGTTGATACTTCTGCAAAGGGAACTGCATACTTGCCCACCCAAGAAGCATGCATTTTTAATATAAGACATGTAGAAGAAGCAGGCATATATCCTGGTTTAGAAGAGGAGTTTGTAATTATTGGTGAACAGGAACAGGAAGATGACGGCAGCCTAATTCTGAGCTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTTCAAGCTGAGGATTTTGTTATCAAGGGTAAGGTTGTTGATGGAAACAAAGGGGGAGTAGTTGTTCTTGTGGAAGGCCTTAAAGGATTTGTTCCTTTCTCTCAAATATCAGCAAAATCAACTGCAGAGGAGCTGCTTAATAAAGAGCTACTTCTGAAGTTTGTGGAGGTTGATGAAAAACTATATCGGCTAATCCTAAGTAATTCCAAGGCAATTGTCAGTAGCCAGTCAGAGCTAAGAATTGGGTCAGTAGTTACTGGAATTGTGCAGATTCTGAAACCATATGGAGCCTTCGTTGACATCGGTGGAGTTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATACCAGATATTGCAGCCGTTCTTCAACCAGGAGATATGCTAAAGGTCATGATTTTGAGCTATGACCGCGATCGAGGCCGTATTAGTCTTTCTACCAAGAAACTGGAACCTTCTCCTGGAGACATGCTTCACAATCCAAAGCTTGTTTTTGAGAAGGCGGACGAGATGGCTCAGACATTCAGGCAAAGAATAGCACAAGCAGAAGCAATGGCTCGTGCAGAGCTTCTCGAATTTCAGCCTGAGAATTCATAGATGAAAGAGTGATTCTGGCGATTTATGATGGCCATCCTTCACAATGAGCCTCTCAATTACAAGGTATTGGCACTTTGAACTGGAATAATTGATTGTATTTATTATATTATGCTAGATACTTTATTTTTAATTTTCTTCGGGTCTCGTTTGATAATCATTTGGTTTTTAGAAATCAACCTGATAGATGCTACTTCACGTGTAAAATTGTTGGTTTTTAGATGCTATTTTTGCAACGTTTTCGAA

Coding sequence (CDS)

ATGAGCTCATTGGCGCATCAACTTTGTGGATTGAGGAGTTCCCCTCTTTCTTCAACGCCGATTTCAACTCGGAAGCGTTTTTCTCCGGTAGTTTCTGCTGCAGCTTCCCCTACTCCCATTTCCAATGCGCAGACCAAAGAGCGCCTTAAGCTCAAGCAACTCTTCAAGGAAGCTTATGAACGTTGCTGTATTACCCCCATGGATGGCGTCTCCTTCACGCTTGAGGACTTCCATGCTGCTCTTGCGAATTACGACTTCGTTTCGGAACTCGGAACCAAGGTGAAAGGTACTGTATTCTCTACCGATGCTAATGGGGCACTAGTTGATACTTCTGCAAAGGGAACTGCATACTTGCCCACCCAAGAAGCATGCATTTTTAATATAAGACATGTAGAAGAAGCAGGCATATATCCTGGTTTAGAAGAGGAGTTTGTAATTATTGGTGAACAGGAACAGGAAGATGACGGCAGCCTAATTCTGAGCTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTTCAAGCTGAGGATTTTGTTATCAAGGGTAAGGTTGTTGATGGAAACAAAGGGGGAGTAGTTGTTCTTGTGGAAGGCCTTAAAGGATTTGTTCCTTTCTCTCAAATATCAGCAAAATCAACTGCAGAGGAGCTGCTTAATAAAGAGCTACTTCTGAAGTTTGTGGAGGTTGATGAAAAACTATATCGGCTAATCCTAAGTAATTCCAAGGCAATTGTCAGTAGCCAGTCAGAGCTAAGAATTGGGTCAGTAGTTACTGGAATTGTGCAGATTCTGAAACCATATGGAGCCTTCGTTGACATCGGTGGAGTTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATACCAGATATTGCAGCCGTTCTTCAACCAGGAGATATGCTAAAGGTCATGATTTTGAGCTATGACCGCGATCGAGGCCGTATTAGTCTTTCTACCAAGAAACTGGAACCTTCTCCTGGAGACATGCTTCACAATCCAAAGCTTGTTTTTGAGAAGGCGGACGAGATGGCTCAGACATTCAGGCAAAGAATAGCACAAGCAGAAGCAATGGCTCGTGCAGAGCTTCTCGAATTTCAGCCTGAGAATTCATAG

Protein sequence

MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQAEAMARAELLEFQPENS
Homology
[Close]
BLAST of CmoCh17G003780 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 4.2e-145
Identity = 271/384 (70.57%), Postives = 320/384 (83.33%), Query Frame = 0 

Query: 1   MSSLAHQLC-GLRSSPLSSTPIS--------TRKRFSPVVSAAASPTPISNAQTKERLKL 60
           M+SLA QL  GLR  PLS++ +S         + RFSP+VSA A    +SNAQT+ER KL
Sbjct: 1   MASLAQQLAGGLRCPPLSNSNLSKPFSPKHTLKPRFSPIVSAVA----VSNAQTRERQKL 60

Query: 61  KQLFKEAYERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTS 120
           KQLF++AYERC   PM+GVSFT++DFH AL  YDF SE+G++VKGTVF TDANGALVD +
Sbjct: 61  KQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDIT 120

Query: 121 AKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAW 180
           AK +AYLP  EACI+ I++VEEAGI PG+ EEFVIIGE E +D  SLILSLR +QY LAW
Sbjct: 121 AKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADD--SLILSLRQIQYELAW 180

Query: 181 ERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFV 240
           ERCRQLQAED V+KGK+V  NKGGVV LVEGL+GFVPFSQIS+KS+AEELL KE+ LKFV
Sbjct: 181 ERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFV 240

Query: 241 EVDEKLYRLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQ 300
           EVDE+  RL++SN KA+  SQ++L IGSVVTG VQ LKPYGAF+DIGG+NGLLHVSQIS 
Sbjct: 241 EVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 NHIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQ 360
           + + DIA VLQPGD LKVMILS+DR+RGR+SLSTKKLEP+PGDM+ NPKLVFEKA+EMAQ
Sbjct: 301 DRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 361 TFRQRIAQAEAMARAELLEFQPEN 376
           TFRQRIAQAEAMARA++L FQPE+
Sbjct: 361 TFRQRIAQAEAMARADMLRFQPES 378

[Close]
BLAST of CmoCh17G003780 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 5.7e-142
Identity = 262/383 (68.41%), Postives = 317/383 (82.77%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTR---KRFSPVVSAAASPT-----PISNAQTKERLKLK 60
           M+SLA Q  GLR SPLSS+   +R   K F    SA+ SPT      +S+ QTKERL+LK
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVAMSSGQTKERLELK 60

Query: 61  QLFKEAYERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSA 120
           ++F++AYERC  +PM+GV+FT++DF AA+  YDF SE+GT+VKGTVF TDANGALVD SA
Sbjct: 61  KMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDISA 120

Query: 121 KGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWE 180
           K +AYL  ++ACI  I+HVEEAGI PG+ EEFVIIGE E +D  SL+LSLR++QY LAWE
Sbjct: 121 KSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDD--SLLLSLRNIQYELAWE 180

Query: 181 RCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVE 240
           RCRQLQAED ++K KV+  NKGG+V LVEGL+GFVPFSQIS+K+ AEELL KE+ LKFVE
Sbjct: 181 RCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVE 240

Query: 241 VDEKLYRLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQN 300
           VDE+  +L+LSN KA+  SQ++L IGSVV G+VQ LKPYGAF+DIGG+NGLLHVSQIS +
Sbjct: 241 VDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHD 300

Query: 301 HIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQT 360
            + DIA VLQPGD LKVMILS+DRDRGR+SLSTKKLEP+PGDM+ NPKLVFEKA+EMAQT
Sbjct: 301 RVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 360

Query: 361 FRQRIAQAEAMARAELLEFQPEN 376
           FRQRIAQAEAMARA++L FQPE+
Sbjct: 361 FRQRIAQAEAMARADMLRFQPES 381

[Close]
BLAST of CmoCh17G003780 vs. ExPASy Swiss-Prot
Match: P46228 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsA PE=1 SV=4)

HSP 1 Score: 271.6 bits (693), Expect = 1.4e-71
Identity = 145/304 (47.70%), Postives = 201/304 (66.12%), Query Frame = 0 

Query: 66  PMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPTQEACI 125
           P   + FT EDF A L  YD+    G  V GTVF+ +  GAL+D  AK  A+LP QE  I
Sbjct: 7   PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 66

Query: 126 FNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAEDFVIK 185
             +   EE  + P    EF I+   ++ +DG L LS+R ++Y  AWER RQLQ ED  ++
Sbjct: 67  NRVESPEEV-LQPSEMREFFIL--SDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVR 126

Query: 186 GKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRLILSNS 245
            +V   N+GG +V +EGL+GF+P S IS +   E+L+ +EL LKF+EVDE   RL+LS+ 
Sbjct: 127 SEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHR 186

Query: 246 KAIVS-SQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAVLQPG 305
           +A+V    + L +G VV G V+ +KPYGAF+DIGGV+GLLH+S+IS +HI    +V    
Sbjct: 187 RALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVN 246

Query: 306 DMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRI-AQAEAM 365
           D +KVMI+  D +RGRISLSTK+LEP PGDM+ NP++V+EKA+EMA  +R+++  QAE +
Sbjct: 247 DEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQQAEGL 306

Query: 366 ARAE 368
              E
Sbjct: 307 VVTE 307

[Close]
BLAST of CmoCh17G003780 vs. ExPASy Swiss-Prot
Match: P73530 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1A PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 4.4e-70
Identity = 147/308 (47.73%), Postives = 202/308 (65.58%), Query Frame = 0 

Query: 70  VSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPTQEACIFNIR 129
           + FTLEDF A L  YD+    G  V GTVFS ++ GAL+D  AK  AY+P QE  I  + 
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69

Query: 130 HVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAEDFVIKGKVV 189
             EE  + P    EF I+   ++ +DG L LS+R ++Y  AWER RQLQAED  ++  V 
Sbjct: 70  DPEEV-LQPNETREFFIL--TDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVF 129

Query: 190 DGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRLILSNSKAIV 249
             N+GG +V +EGL+GF+P S ISA+   E+L+ ++L LKF+EVDE+  RL+LS+ +A+V
Sbjct: 130 ATNRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALV 189

Query: 250 S-SQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAVLQPGDMLK 309
               + L +  VV G V+ +KPYGAF+DIGGV+GLLH+S+IS +HI    +V    D +K
Sbjct: 190 ERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIK 249

Query: 310 VMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQAEAMARAEL 369
           VMI+  D +RGRISLSTK+LEP PG ML +  LV E ADEMA+ FRQ+      +A A+ 
Sbjct: 250 VMIIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQK-----RLAEAQG 309

Query: 370 LEFQPENS 377
           + ++P  S
Sbjct: 310 IPYEPPTS 309

[Close]
BLAST of CmoCh17G003780 vs. ExPASy Swiss-Prot
Match: O33698 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpsA PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.3e-42
Identity = 100/284 (35.21%), Postives = 163/284 (57.39%), Query Frame = 0 

Query: 75  EDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPTQEACIFNIRHVEEA 134
           +DF  AL      S+ G  V+G V     +GA +D   K  A+LP +EA +  +  + EA
Sbjct: 12  DDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDL-EA 71

Query: 135 GIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAEDFVIKGKVVDGNKG 194
            +    E EF++I  ++Q +DG + +SLR++    AW R  +LQ     ++ KV   NKG
Sbjct: 72  HLPKDEELEFLVI--RDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKG 131

Query: 195 GVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRLILSNSKAI-VSSQS 254
           GV   +EGL+ F+P S ++ K   + L  K L + F+EV+    +L+LS  +A   +   
Sbjct: 132 GVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVR 191

Query: 255 ELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAVLQPGDMLKVMILS 314
           E+ +G ++ G V  LKP+G FVD+GG   LL ++QISQ  + D+ A+ + GD ++ ++++
Sbjct: 192 EIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVA 251

Query: 315 YDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRI 358
            D  +GRISLSTK LE  PG++L N   +   A + A+  R+++
Sbjct: 252 IDNTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292

[Close]
BLAST of CmoCh17G003780 vs. ExPASy TrEMBL
Match: A0A6J1H681 (30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459974 PE=4 SV=1)

HSP 1 Score: 723.4 bits (1866), Expect = 4.9e-205
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRL 240
           DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRL
Sbjct: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRL 240

Query: 241 ILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAV 300
           ILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAV
Sbjct: 241 ILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPENS 377
           EAMARAELLEFQPENS
Sbjct: 361 EAMARAELLEFQPENS 376

[Close]
BLAST of CmoCh17G003780 vs. ExPASy TrEMBL
Match: A0A6J1H453 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459974 PE=4 SV=1)

HSP 1 Score: 719.5 bits (1856), Expect = 7.1e-204
Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRL 240
           DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRL
Sbjct: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRL 240

Query: 241 ILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAV 300
           ILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAV
Sbjct: 241 ILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPE 375
           EAMARAELLEFQPE
Sbjct: 361 EAMARAELLEFQPE 374

[Close]
BLAST of CmoCh17G003780 vs. ExPASy TrEMBL
Match: A0A6J1KY62 (30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499271 PE=4 SV=1)

HSP 1 Score: 708.4 bits (1827), Expect = 1.6e-200
Identity = 367/376 (97.61%), Postives = 372/376 (98.94%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFHA+LANYDFVSE+GTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIG QEQED+GSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRL 240
           DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKL RL
Sbjct: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240

Query: 241 ILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAV 300
           +LSNSKAI SSQSELRIGSVVTGIVQILKPYGAF+DIGGVNGLLHVSQISQNHI DIAAV
Sbjct: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPENS 377
           EAMARAELLEFQPENS
Sbjct: 361 EAMARAELLEFQPENS 376

[Close]
BLAST of CmoCh17G003780 vs. ExPASy TrEMBL
Match: A0A6J1L0J3 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499271 PE=4 SV=1)

HSP 1 Score: 704.5 bits (1817), Expect = 2.4e-199
Identity = 365/374 (97.59%), Postives = 370/374 (98.93%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFHA+LANYDFVSE+GTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIG QEQED+GSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRL 240
           DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKL RL
Sbjct: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240

Query: 241 ILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAV 300
           +LSNSKAI SSQSELRIGSVVTGIVQILKPYGAF+DIGGVNGLLHVSQISQNHI DIAAV
Sbjct: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPE 375
           EAMARAELLEFQPE
Sbjct: 361 EAMARAELLEFQPE 374

[Close]
BLAST of CmoCh17G003780 vs. ExPASy TrEMBL
Match: A0A6J1CCC9 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009918 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 9.7e-161
Identity = 309/391 (79.03%), Postives = 335/391 (85.68%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTR----KRFS------------PVVSAAASPTPISNAQ 60
           M+SLAH++      PLSS  +S      +RFS            PVVS+AAS TPISNAQ
Sbjct: 1   MNSLAHRV------PLSSLRLSVSSSSWRRFSRKESHNHKFRALPVVSSAASTTPISNAQ 60

Query: 61  TKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDAN 120
           TKERLKLKQLFKEAYERCC TPMDGVSFTLEDFHAAL+NYDFVSELGTKVKGTVFSTDA+
Sbjct: 61  TKERLKLKQLFKEAYERCCTTPMDGVSFTLEDFHAALSNYDFVSELGTKVKGTVFSTDAS 120

Query: 121 GALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRS 180
           GALVDT+AKGTAYLP +EACI  IRHVEEAGIYPGLEEEFVII   E E DGSLILSLR 
Sbjct: 121 GALVDTTAKGTAYLPIEEACILKIRHVEEAGIYPGLEEEFVIIA--EHETDGSLILSLRR 180

Query: 181 VQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNK 240
           +QYGLAWERCRQLQAED VIKGKVV  NKGGV VLVEGL+GFVPFSQISAKSTAEELL+K
Sbjct: 181 LQYGLAWERCRQLQAEDVVIKGKVVGANKGGVFVLVEGLRGFVPFSQISAKSTAEELLDK 240

Query: 241 ELLLKFVEVDEKLYRLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLL 300
           EL LKFVEVDE+L RLILSN KAI +SQ+ELRIGSVVTG VQILK YGAF+DIGGVNGLL
Sbjct: 241 ELRLKFVEVDEELSRLILSNCKAIANSQAELRIGSVVTGTVQILKSYGAFIDIGGVNGLL 300

Query: 301 HVSQISQNHIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFE 360
           H+SQIS NHI D+A VL+PGD LKVMILSYD +RGR+SLSTK LEP+PGDM+HNPKLVFE
Sbjct: 301 HISQISHNHISDMATVLRPGDTLKVMILSYDHERGRVSLSTKNLEPTPGDMIHNPKLVFE 360

Query: 361 KADEMAQTFRQRIAQAEAMARAELLEFQPEN 376
           KADEMAQTFRQRIAQAEAMAR +LL  QPE+
Sbjct: 361 KADEMAQTFRQRIAQAEAMARVDLLRLQPES 383

[Close]
BLAST of CmoCh17G003780 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 505.4 bits (1300), Expect = 4.0e-143
Identity = 262/383 (68.41%), Postives = 317/383 (82.77%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTR---KRFSPVVSAAASPT-----PISNAQTKERLKLK 60
           M+SLA Q  GLR SPLSS+   +R   K F    SA+ SPT      +S+ QTKERL+LK
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVAMSSGQTKERLELK 60

Query: 61  QLFKEAYERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSA 120
           ++F++AYERC  +PM+GV+FT++DF AA+  YDF SE+GT+VKGTVF TDANGALVD SA
Sbjct: 61  KMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDISA 120

Query: 121 KGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWE 180
           K +AYL  ++ACI  I+HVEEAGI PG+ EEFVIIGE E +D  SL+LSLR++QY LAWE
Sbjct: 121 KSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDD--SLLLSLRNIQYELAWE 180

Query: 181 RCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVE 240
           RCRQLQAED ++K KV+  NKGG+V LVEGL+GFVPFSQIS+K+ AEELL KE+ LKFVE
Sbjct: 181 RCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVE 240

Query: 241 VDEKLYRLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQN 300
           VDE+  +L+LSN KA+  SQ++L IGSVV G+VQ LKPYGAF+DIGG+NGLLHVSQIS +
Sbjct: 241 VDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHD 300

Query: 301 HIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQT 360
            + DIA VLQPGD LKVMILS+DRDRGR+SLSTKKLEP+PGDM+ NPKLVFEKA+EMAQT
Sbjct: 301 RVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 360

Query: 361 FRQRIAQAEAMARAELLEFQPEN 376
           FRQRIAQAEAMARA++L FQPE+
Sbjct: 361 FRQRIAQAEAMARADMLRFQPES 381

[Close]
BLAST of CmoCh17G003780 vs. TAIR 10
Match: AT1G71720.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 99.0 bits (245), Expect = 8.7e-21
Identity = 65/208 (31.25%), Postives = 118/208 (56.73%), Query Frame = 0 

Query: 156 GSLILSLRSVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAK 215
           G  +LS R     +AW R RQ++  +  I+ K+ + N GG++  +EGL+ F+P  ++  K
Sbjct: 258 GRPLLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKK 317

Query: 216 ----STAEELLNKELLLKFVEVDEKLYRLILSNSKAIVSSQSELRIGSVVTGIVQILKPY 275
               +  +E + +  L++   ++E    LIL  S+ +   +  LR G+++ G V  + PY
Sbjct: 318 VNTFTELKENVGRRFLVQITRLNEDKNDLIL--SEKVAWEKLYLREGTLLEGTVVKILPY 377

Query: 276 GAFVDIG--GVNGLLHVSQISQNHIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLE 335
           GA V +G    +GLLH+S I++  I  ++ VLQ  + +KV+++       +ISLS   LE
Sbjct: 378 GAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVK-SLFPDKISLSIADLE 437

Query: 336 PSPGDMLHNPKLVFEKADEMAQTFRQRI 358
             PG  + + + VF +A+EMA+ +R+++
Sbjct: 438 SEPGLFISDREKVFTEAEEMAKKYREKM 462

[Close]
BLAST of CmoCh17G003780 vs. TAIR 10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-18
Identity = 54/180 (30.00%), Postives = 99/180 (55.00%), Query Frame = 0 

Query: 171 WERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEE---------- 230
           W+  +         +G+V   N GG+++    L GF+P+ Q+S   + +E          
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156

Query: 231 -LLNKELLLKFVEVDEKLYRLILSNSKAIVSSQSE-LRIGSVVTGIVQILKPYGAFVDIG 290
            L+  +L +K V+ DE+  +LILS   A+    S+ + +G V  G V  ++ YGAF+ + 
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216

Query: 291 ------GVNGLLHVSQISQNHIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSP 333
                  + GL+HVS++S +++ D+  VL+ GD ++V++ + D+++ RI+LS K+LE  P
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276

[Close]
BLAST of CmoCh17G003780 vs. TAIR 10
Match: AT4G29060.1 (elongation factor Ts family protein )

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-10
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 0 

Query: 254 ELRIGSVVTGIVQILKPYGAFVDIGG-VNGLLHVSQISQNHIPDIAAVLQPGDMLKVMIL 313
           EL  G+  TG V+ ++P+GAFVD G   +GL+HVSQ+S N + D+++V+  G  +KV ++
Sbjct: 132 ELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLV 191

Query: 314 SYDRDRGRISLSTKKLEPSP 333
             D +  RISL+ ++ +  P
Sbjct: 192 EADIESKRISLTMRENDDPP 211

[Close]
BLAST of CmoCh17G003780 vs. TAIR 10
Match: AT4G29060.2 (elongation factor Ts family protein )

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-10
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 0 

Query: 254 ELRIGSVVTGIVQILKPYGAFVDIGG-VNGLLHVSQISQNHIPDIAAVLQPGDMLKVMIL 313
           EL  G+  TG V+ ++P+GAFVD G   +GL+HVSQ+S N + D+++V+  G  +KV ++
Sbjct: 132 ELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLV 191

Query: 314 SYDRDRGRISLSTKKLEPSP 333
             D +  RISL+ ++ +  P
Sbjct: 192 EADIESKRISLTMRENDDPP 211

The following BLAST results are available for this feature:
BLAST of CmoCh17G003780 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P293444.2e-14570.5730S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=... [more]
Q93VC75.7e-14268.4130S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ... [more]
P462281.4e-7147.7030S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA... [more]
P735304.4e-7047.7330S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus... [more]
O336982.3e-4235.2130S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805... [more]
BLAST of CmoCh17G003780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H6814.9e-205100.0030S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX... [more]
A0A6J1H4537.1e-204100.0030S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX... [more]
A0A6J1KY621.6e-20097.6130S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3... [more]
A0A6J1L0J32.4e-19997.5930S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3... [more]
A0A6J1CCC99.7e-16179.0330S ribosomal protein S1, chloroplastic-like isoform X1 OS=Momordica charantia O... [more]
BLAST of CmoCh17G003780 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G30510.14.0e-14368.41ribosomal protein S1 [more]
AT1G71720.18.7e-2131.25Nucleic acid-binding proteins superfamily [more]
AT3G23700.12.4e-1830.00Nucleic acid-binding proteins superfamily [more]
AT4G29060.15.3e-1040.00elongation factor Ts family protein [more]
AT4G29060.25.3e-1040.00elongation factor Ts family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 343..363
NoneNo IPR availableGENE3D2.40.50.140coord: 176..250
e-value: 3.1E-5
score: 25.7
coord: 74..175
e-value: 2.2E-6
score: 29.4
NoneNo IPR availableGENE3D2.40.50.140coord: 251..331
e-value: 5.6E-22
score: 79.5
NoneNo IPR availablePANTHERPTHR1072430S RIBOSOMAL PROTEIN S1coord: 1..375
NoneNo IPR availablePANTHERPTHR10724:SF1130S RIBOSOMAL PROTEIN S1, CHLOROPLASTICcoord: 1..375
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 256..326
e-value: 3.2E-24
score: 96.5
coord: 89..163
e-value: 0.0059
score: 25.8
coord: 179..245
e-value: 7.6E-5
score: 32.1
IPR003029S1 domainPFAMPF00575S1coord: 180..243
e-value: 2.5E-7
score: 31.0
coord: 255..326
e-value: 5.4E-19
score: 68.3
IPR003029S1 domainPROSITEPS50126S1coord: 91..163
score: 10.796713
IPR003029S1 domainPROSITEPS50126S1coord: 181..245
score: 12.28162
IPR003029S1 domainPROSITEPS50126S1coord: 258..326
score: 21.371054
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 177..247
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 89..189
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 250..332

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G003780.1CmoCh17G003780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding