CmoCh17G003640 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G003640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr17: 2232328 .. 2239999 (+)
RNA-Seq Expression	CmoCh17G003640
Synteny	CmoCh17G003640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATCTTTTAATCAGATGGGGTTTGTTCTCTATCCATGATTGAGTAATTTGGGTAATTCCCAGGGAATTCTCTTAACAGGAAACCTTGACCATCTACATATGCCTCATTGAAAAGATTCATTCTGTCCTGAATAGAAACAGATGGGAAGAAGAAAGATGTACTTCCAGGGGATTATGTCCATTGCAAAGGAAATCGAGGAAAGAGGTTAGAATGTATCGTTTTTATTTTCTTTAAATTTTCAATGTTTTCGACATTAATAATATAGATGATGTTTTCTTTTAAAAATTATATTCGTATTTTATAAGAGTATGAGACGTTACGTCGTTACAAGTTTACAATTTTAAGTCACTAAGATCTCATAGGTTGACATTTTAGCAAGGTCTTATTATTATTGCTCCTCACTCCTCACTCACCATTTCTTGTTCTTAAGCTTCAACACACAATCTGTAGCATCACTATTGTATGAGTTTGCTATTAGTAATCACGACTCTCTACAATAGTATGATATTGTCCACTTTAAGCATAAGCTCTCATGGCTTTGTTTTGGGTTTACCCAAAAGGCTTCATACCAATGGAAATTGTATTCCTCACTTATAAATTCATGATCTTCCACTAAATTAACCAATGTGGTACTCACTCCCAGTTATTTTCAACATTTGCTTGCAGGTAGCCGTTGCACTAAATGTGGAGGCAAATGACAATCAGCCCGTGGGGTCCTCATCACCAGGCTTTCTCTCTGATGCTAACGTGCATTATATACATCTTCCAGACCTACATGCATGCAGCTGCCAGGTATGTGTATAGCTCTCTCATATTCATCTTTAATTGATCATTTCCCCCTCCCCAATGTGATTGGTTTTGACATCTTATTTATGATACTTACTTTTGAATCTATTAAACGCTCCAGTCCTCGCTACTTTATTGTGTCTGACACGAAGGGGGCAACCCCTCCTCTAAATCATAATGGCTGTTATAGTAAATTAAACTTTAGCGCTATAATTTAAGGTTTATTTTCGGTGGCTTGTTCTCTTGTGTATTGATTACACATGGTCACAATGATTTCACTAAGAAAGAGGATTAGGTTATATATAATATTCAAGCCTAGAGCGTCATAGCATTATTAGGGCCTATGAAATGAAATTTTGTTGGTGGAATGCTGACAACATGACCACCAACAAGATTGGCTCGCCCGAGAGGTGGGGTCCTGAAAGCCGAATTGGAGAAAATAGTTAAAATTCCTAATAGTTGACACTCTGGTGTTATAAAATGTGTTCGATTCATATTTGGTTATGTTAGAATCTTTCAACAAAATAATAAGAAGACAGTGGGGGTAGCTGTTTGAATTATTGTTTTATTCAGTCTGGTCCAAATTCCAATATTAAAATATTAGGTTTAGATGGCATGTACTTAGATTGGGTAAAGGGATAGTTTAATTAATTAATACATTACTATTTTCTTTTCGAGTCGTAATTTTGATTTTGAGTTTTTATTGTTGGATGAAAGTCACGTCTGCTAATTTAAGGAATGATAATAGGTTTATAATCAAGGAATATTATCTCCATTAGTACGAGATCTTTAGAAAACTCAAAACAAAGTCATGAAAGCTTTACTTAAAGTGGATAATATTATACCATTGTGGAGAGTCGTGTTCATCTAACATCTACCTTGTTATTTGTATTAGTACTATAATAGTTAATAAGTTATAAAATGTTGAAGGGTTAGGTTATTGAAAGTTTAAATTACAAATTTAATTTTTGATTTTTGAGATTTGTATTGGTTAGTCTTGAACATTTAGAAGTAGGGTAAATTTTTAGTTGGGTCTAAATATAAATATATAAATAGATTATTAAAAATTCAAATTTAAAAAAAAAAATTATTTATTAAATAATATTAAAAATAATGAAAGTTTAGAGACTAAAATTATAAAATTTTAATGGTATAATCTATAATTTTTAAAAATAATTAATTTGTTAAATATAAATATAAATTTTATATTCATTGAAATCTTGTATTTTAAATTTTTTATCTAGTAAATTTGATAAATTTTTTTTTTTAAGTTTAGGGATTTTTTATAATTTTAAAAGTTAAATACAAATAGATATCATTTTAAAAATTGAAAACTAAATTTATAATTTAATCTTTAAATTTGTTGATAAGCACGTATGTATTTATGTTTTATTTATGAATTTGTATGTTGTATAAATTAGAATGCAACTGCAAATTAGTTTAGAAATTAAGATTTATGTGGAATTAAAAATTTTCCAATTTTCTAGAGCCAGACACTCCAAAATTAATAAATTGTTAATTAGAGTGAACAAGGAATTATGTGAAGGGAATATGGAGGCAGGGGCATAGCTGTACACACTCCCCATAAAAGTGAGAAAAGTCCAAAAAGCCCACAAAATAATTAAACAAAATAAAACGGAGTTGGAGATAAAAAGACACGGCCAGATAGACGGACCCACATAGCACGTGCACTTTTTAAACTTATTTTCCCTATTTTCTAAAAACTCTCAATATTATTTATCTCTCTCTCTCTTTTTTTTTTTTAACTCTAAATTTTGTGTTATTTTAAAATTTGTTTTAAATATTAAGAATTAAGAAGTCAAAGGCAGATGGCACGTCATCAAGGTATAAATTCTTTAATGCCGCATAACATTTGGTGATGCTTTGTAGGCCGTGTCACCAATAACTGATCAAACCCATAAATCGTTATCATCTAGATGGGTGGGGGACTAAAGAACTCAAATAAGGACACCTATTAACAATGCAAACAAACGTGTTCAAACAAAAAACAATAATCAACTAATTCATTTGATTTTTTTTTATGTTTGTTTAATTAATTAAAATATTATTATTTAGATGAAAGAAAAAAAAAGTAGAAGTCAAATCACGGGACGGTTCGTCCATTCACGACCAAGAAACACTGGATTCTCTTTTGGGTAGGCCCTAAAAGGAGAAGGAAGACTAGAATGCCAATAGATGTCTATTATTGAATTCACCCGACCCGATAGTATTCCATTTTTGAAACGTCCAGTGCCAAAATTACTGAATGGGTAAGTCGCCTGACTGACTTTTCCTTTCTCTTTTTTTTTTTTCGGGAGAATGGCGCTGCTCAAAACAAGGGACAAAAACAAAATCACAAGCTTCTGATAAAAAACGAGTAAGAAAACGCGAAGCGTTCTCTTGGTTATCGTTTTTAGGTTTTTCTTTTAGGGTTTCTATCAGAATTTTAAAAATGAGTCATTCACAACCAATATGTAATGTCACAAAAATCACAAAAATACCTTCCTTTAGGTCGGAAGAATCTCCATTTCTACCCAAAATAAACAAATAAATTAATAATAATATGAAAGAAAAAGAAATCCACTTTAACGATGACACAACTTTGTTTTGATTTTAATTACAAGAACATTCTCAAAAGCTTTGGTGACATATTTTTTAAACAATTAAAATACATTTTAGGTTAATCTTAGTGGAAGTTGTGGAAACTATATGTTATTTAATTAAAATTGATATCTTACGTAGCCAGTAAGGAATCGAAGCTGATATTTATAGGAATGAAGGTGAAGGGGCAAAAAGGCAATCATTCGCTACAGGAATCGCAATACATTAAAGACTCAAAGGTGCCAAAAGGTTAGCTCTGCACTCCCACTCCCACATAATTCCATATGATTTTCAACTTTTTCTGCCATCGACTATGTTGGTTCTTGGTTTACCTTTCATAAAGCAATTAAAGATCGCCACAGAAAAGTATATTAATTCCACCGTCACATCAATAATTTTTTTTTTCTTTTTCCTTTTTATACTCAATATTTATTTTCTAATTTTTTATTTTTTTTTATTTTGAATTCTTATTTATAAAATTTTATCATAAATGGAATAGAATCACTTATATTATTGATTTATTTTGTTTTTTCCTAACAACATTTTGCAATTTTCTTTATTTCGATTCCGAGGGTAAGAAATTTCATAAACTGGTTTTTTTTTTTTTTTTTTTTTAATCTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTAATCTTTTGATAGCGTGTCCTTTTAAAGTGGAATTCATTCTTTGTTTTTTCCTTTCCATTTACTCAGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAACGGAGCACCTAACAACGTATCTTCACAGACCAAGAACTATGAAATCGCCCCTTTCATTCTGGGGTGATGGAGGGATCATACCATTCGAGCCTTTTTTTTCATGTTTTTCCCGGAGGTTTGGAGAAAGCTCCAATCCATAGGATTTTCTTAATCCTCCCCAAAAGCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCTTCCACAGGGACCAGGAGATTTGAAAAAGGATCTTCGAGTGTCTAAGGTTGGGCCAGGAGGGTTTCTTAGGATCTCTTCTGTTTCATCGATTTTGTCTGGATCCTCCTTTTCTTCTGAAAAAAGGAAGAAGAAGTATCTTTTTCGGTTGATCCCTCTCGTTTCTATTTAGTCCTCTCCATTTCCTTCATTTCTTTCCGTTTCTTAGTAAGAATGAGTGACGGTATTCTGCCTAAATAGTAGACACAAGTAATAAATTAGAGAATACTAAAGATTCGAGCCATAAAATTTCTCAATTCTGACACAACGTACTTATTAGATCTAATATAATTATTTTGCGGTATCCAGGCTAATATCAATCCAATAAAGGAAGCTAAGCTATAAAATTACCTTGTTGATAAAATTTCTCAAACCAAGAATACTTGTTTTAGATTCGAAATATATATGTATAAACTTTTGGATAAATATTTTTAATACTTGATGAAATAAAATAAATAAATAAACAATATTTTTTTCAAATTACATTTAAAGCCGCCTAAACTTAGGTCTCTTATTTATTATTTATTTTTTCTTAAAAGAAAAAAGAAAATAATATAGTGAAATATAACTGATGTAGCACAAAATTCTAATGGAAGCCTCCGGGGGGCTTAAATGTCAACTGATGGATGCATTGAATATCCATCAAAAGTTTGGAGCCAGATCATCGGACACGTGTATATTTCCCATTGGTGATGTTCTTTTGTAAGGGTTTTTTATTTTTTTATTATTGCGTGAGAGAAAATATAAATGAAAAAAATACAAAAATTGTTTAATTACCCCCATACCCTCCGTAAGGCTTTGCTATGGGCTTCCCAAAAGGCCTCAAGTATAAGCTGTCATGACTTTACTTTGTGCTTCCCCAAAAGGCCTTGTACCAATAAAGAGAGTATTCCTTAATTATAAACCCACGATCATTCTCTAAATTAGCCGATGTGGGACTTTCTTTCAACATCCAACAATTATTACATTTTTTTTAATAAATAAGAGATTAATTACTATTTTTAAAAGTCGAAAAAAATAATAGTATTTGAAAATTTATTTATTAATGTAATAAAATAATGGTTTGAAAAAAAAACACAACAACAAAAGAAAAAAAAAACACACGCAATTGTCGAAATTTACTTGTTGAAGTTGACAGGGCAATGTATAAAAAGGATGTTGGTGTTGGCCCAAGGAATTTGTCAATTAGGAGAAGGAATGGACGCCAAAGAATAAGAAATTCATTTTATTTTATTTTCTTGGTTTTTTTTTTTAAAGGAAAGTAAATCTATATTTTAATTTTTGTTTTTTATTCCACTCCGGTGATGAGATTCGGACATTAGATTTTTTAATCGAGCATAAATATTTTATATCAGTTGAGCTATGTTTTCAATTATACGTTCCGTCTTTGAACTCTCCAGTTTTTTTATTTGGTAAAGTTTAATTTTATAATAAATTTTAAAAAAATTAATAAATTAATTTTAAAAATATTGAATTTATGATAAATGTACAAAATAAAAAAAAATCAATTTAGATATAAAAAAAAATTAGAAATTAAATTAATTGAAAAGAAATCTGAATCACGAACCCCAGCTGGGTGCGGACCCAACCGAGCCATTATAGACCATCAGACGAGCCCCAAGCCTTTGGCTGTGGCTCTATAAAATACGAGTCACATGGTGCAGAGTCGAAGCAATAAGTCATAGTTTTGGTTCACTTCTCTCTCTCTCTAACTACTTGCAGAAGGGGACGCCTTAAGAACGGGTTCCATATATATCCTCTTCAATCACAACATTCTCTGTCTTTTCGCTCTCGTAAAGCCGTGATTCCATCTTCTTCAGAGTTCTTCCTGTTTCTGTTGATCGAGAATTTGTTGTAGAAGGAATTTCCCTAAAGGTACGCATCTTATCATAAGTTCCTAATCTTCTTCCTGCTGTTATCGTTAGAATTTTTAATCTTCTTCTCTGATTCTCGAGAATTTTCAATCAAGATTGTTAATCCTAGTGATTCTGATTGGTTTACTTTTTTTTCCTGATTTCGTAATACCTCTTTTTTTGCTTCATTTCTTCGTAAGAATCGGTCTCGATTTGATTTCTGATGTTTTGCTGTAAATTCTGATTTCGTTAGGGAGTTGACGTTTCTGTTCGGCTAAATCTGTTATATCCTTTTGTTTTACTCTTGCTCAGGATTTTTTTCTTAGCTTGCTTTGGAACGCGTTGTGTAAATTTGGAGGAGAGAGATTAGATTAA

mRNA sequence

ATATCTTTTAATCAGATGGGGTTTGTTCTCTATCCATGATTGAGTAATTTGGGTAATTCCCAGGGAATTCTCTTAACAGGAAACCTTGACCATCTACATATGCCTCATTGAAAAGATTCATTCTGTCCTGAATAGAAACAGATGGGAAGAAGAAAGATGTACTTCCAGGGGATTATGTCCATTGCAAAGGAAATCGAGGAAAGAGGTAGCCGTTGCACTAAATGTGGAGGCAAATGACAATCAGCCCGTGGGGTCCTCATCACCAGGCTTTCTCTCTGATGCTAACGTGCATTATATACATCTTCCAGACCTACATGCATGCAGCTGCCAGGAATGAAGGTGAAGGGGCAAAAAGGCAATCATTCGCTACAGGAATCGCAATACATTAAAGACTCAAAGGTGCCAAAAGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGGACCAGGAGATTTGAAAAAGGATCTTCGAGTGTCTAAGGTTGGGCCAGGAGGGTTTCTTAGGATCTCTTCTGTTTCATCGATTTTGTCTGGATCCTCCTTTTCTTCTGAAAAAAGGAAGAAGAACCGTGATTCCATCTTCTTCAGAGTTCTTCCTGTTTCTGTTGATCGAGAATTTGTTGTAGAAGGAATTTCCCTAAAGGATTTTTTTCTTAGCTTGCTTTGGAACGCGTTGTGTAAATTTGGAGGAGAGAGATTAGATTAA

Coding sequence (CDS)

ATGCAGCTGCCAGGAATGAAGGTGAAGGGGCAAAAAGGCAATCATTCGCTACAGGAATCGCAATACATTAAAGACTCAAAGGTGCCAAAAGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGGACCAGGAGATTTGAAAAAGGATCTTCGAGTGTCTAAGGTTGGGCCAGGAGGGTTTCTTAGGATCTCTTCTGTTTCATCGATTTTGTCTGGATCCTCCTTTTCTTCTGAAAAAAGGAAGAAGAACCGTGATTCCATCTTCTTCAGAGTTCTTCCTGTTTCTGTTGATCGAGAATTTGTTGTAGAAGGAATTTCCCTAAAGGATTTTTTTCTTAGCTTGCTTTGGAACGCGTTGTGTAAATTTGGAGGAGAGAGATTAGATTAA

Protein sequence

MQLPGMKVKGQKGNHSLQESQYIKDSKVPKAPLFSRIHTSLISIWTAISRAQGPGDLKKDLRVSKVGPGGFLRISSVSSILSGSSFSSEKRKKNRDSIFFRVLPVSVDREFVVEGISLKDFFLSLLWNALCKFGGERLD

Homology

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BLAST of CmoCh17G003640 vs. ExPASy TrEMBL
Match: A0A4D6LLJ5 (Uncharacterized protein ycf68 OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g272 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 42/81 (51.85%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 31  APLFSRIHTSLISIWTAISRAQ-----------------------GPGDLKKDLRVSKVG 83
           APLFSRIHTSLISIWT ISRAQ                       G G LKKDLRVSKV 
Sbjct: 181 APLFSRIHTSLISIWTVISRAQSLRTPPISAMRCVYLSISLLTRKGAG-LKKDLRVSKVV 240

The following BLAST results are available for this feature:

BLAST of CmoCh17G003640 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh17G003640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D6LLJ5	1.9e-05	51.85	Uncharacterized protein ycf68 OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g272 PE=3...	[more]

BLAST of CmoCh17G003640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022546	Uncharacterised protein family Ycf68	PFAM	PF10839	DUF2647	coord: 29..52 e-value: 6.0E-5 score: 23.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G003640.1	CmoCh17G003640.1	mRNA