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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATACCTCTCTGGTCGCCGGAACGCTTTCAATGGTCGCCAACAACGGCGTCGGGTTCGCTAAATTCCTCAATCGCCTCGATATCCTATCCAATTACAGTTTCTCCGCTACCGATTCAATCACCGACCAGATCCCACCGTCTTCCGCCGCTGGAGCTCTTCAATTATCGGCCGCTCTGTTCCCCGTCGCAACCATTGCTCCGCCGCCTGTCAAATCGATTTCGTGCCGATCGTCCTCTCGGATGTTTCTCCGTAGAAAACGACGCACGAAGCGTAGATTGTACAGCGGCGATGATTCCGAGGGCGGCGAGGATAATGGATTCGACGGCGGCGATTTTGACGGACCGTACGGTGGAGATGGCGGCGGAGGCGGCGGTAGGGGTTGGAATTTCGATAGATTTGAGGGGAGTGATTGGGACGAATCATCGTCGTCTTCTACATCTTTGAATCCTGCGTATTATTTCGTTTACGAAGTGGTTTGTTGGATCGCGCTCTCGAACTGTGTGCATTTTGCGTTCAAGAAGGTTGTTAGATTTGCAGCTGAAGCAATTGGGAACTCCGAAAGGGTAAAATTGTTCCTGAGATTGATCTCTGTTTGTTGA mRNA sequence ATGGATACCTCTCTGGTCGCCGGAACGCTTTCAATGGTCGCCAACAACGGCGTCGGGTTCGCTAAATTCCTCAATCGCCTCGATATCCTATCCAATTACAGTTTCTCCGCTACCGATTCAATCACCGACCAGATCCCACCGTCTTCCGCCGCTGGAGCTCTTCAATTATCGGCCGCTCTGTTCCCCGTCGCAACCATTGCTCCGCCGCCTGTCAAATCGATTTCGTGCCGATCGTCCTCTCGGATGTTTCTCCGTAGAAAACGACGCACGAAGCGTAGATTGTACAGCGGCGATGATTCCGAGGGCGGCGAGGATAATGGATTCGACGGCGGCGATTTTGACGGACCGTACGGTGGAGATGGCGGCGGAGGCGGCGGTAGGGGTTGGAATTTCGATAGATTTGAGGGGAGTGATTGGGACGAATCATCGTCGTCTTCTACATCTTTGAATCCTGCGTATTATTTCGTTTACGAAGTGGTTTGTTGGATCGCGCTCTCGAACTGTGTGCATTTTGCGTTCAAGAAGGTTGTTAGATTTGCAGCTGAAGCAATTGGGAACTCCGAAAGGGTAAAATTGTTCCTGAGATTGATCTCTGTTTGTTGA Coding sequence (CDS) ATGGATACCTCTCTGGTCGCCGGAACGCTTTCAATGGTCGCCAACAACGGCGTCGGGTTCGCTAAATTCCTCAATCGCCTCGATATCCTATCCAATTACAGTTTCTCCGCTACCGATTCAATCACCGACCAGATCCCACCGTCTTCCGCCGCTGGAGCTCTTCAATTATCGGCCGCTCTGTTCCCCGTCGCAACCATTGCTCCGCCGCCTGTCAAATCGATTTCGTGCCGATCGTCCTCTCGGATGTTTCTCCGTAGAAAACGACGCACGAAGCGTAGATTGTACAGCGGCGATGATTCCGAGGGCGGCGAGGATAATGGATTCGACGGCGGCGATTTTGACGGACCGTACGGTGGAGATGGCGGCGGAGGCGGCGGTAGGGGTTGGAATTTCGATAGATTTGAGGGGAGTGATTGGGACGAATCATCGTCGTCTTCTACATCTTTGAATCCTGCGTATTATTTCGTTTACGAAGTGGTTTGTTGGATCGCGCTCTCGAACTGTGTGCATTTTGCGTTCAAGAAGGTTGTTAGATTTGCAGCTGAAGCAATTGGGAACTCCGAAAGGGTAAAATTGTTCCTGAGATTGATCTCTGTTTGTTGA Protein sequence MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAALFPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFLRLISVC
Homology
BLAST of CmoCh17G003320 vs. ExPASy TrEMBL
Match: A0A6J1H560 (uncharacterized protein LOC111460236 OS=Cucurbita moschata OX=3662 GN=LOC111460236 PE=4 SV=1) HSP 1 Score: 382.1 bits (980), Expect = 1.4e-102 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query: 1 MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAAL 60
MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAAL
Sbjct: 1 MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAAL 60
Query: 61 FPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGFDGGDFDGPYGGD 120
FPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGFDGGDFDGPYGGD
Sbjct: 61 FPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGFDGGDFDGPYGGD 120
Query: 121 GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180
GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA
Sbjct: 121 GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180
Query: 181 AEAIGNSERVKLFLRLISVC 201
AEAIGNSERVKLFLRLISVC
Sbjct: 181 AEAIGNSERVKLFLRLISVC 200
BLAST of CmoCh17G003320 vs. ExPASy TrEMBL
Match: A0A6J1KZI4 (uncharacterized protein LOC111499005 OS=Cucurbita maxima OX=3661 GN=LOC111499005 PE=4 SV=1) HSP 1 Score: 364.0 bits (933), Expect = 4.0e-97 Identity = 191/200 (95.50%), Postives = 194/200 (97.00%), Query Frame = 0
Query: 1 MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAAL 60
MDTSLVAGTLS+VANNGVGFAKFLNRLDILSNYS SATDSITDQIPPSSAAGALQLS AL
Sbjct: 1 MDTSLVAGTLSIVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSAAGALQLSVAL 60
Query: 61 FPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGFDGGDFDGPYGGD 120
FPVATIAPPPVKSISCRSSSR FLRRKRRTKRRLYS DDSEGGEDNGFD GDFDGPYGGD
Sbjct: 61 FPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSSDDSEGGEDNGFDCGDFDGPYGGD 120
Query: 121 GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180
GGGGGGRGWNFDRF G+DWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA
Sbjct: 121 GGGGGGRGWNFDRFGGNDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180
Query: 181 AEAIGNSERVKLFLRLISVC 201
AEAIGNSERVKLF+RLISVC
Sbjct: 181 AEAIGNSERVKLFMRLISVC 200
BLAST of CmoCh17G003320 vs. ExPASy TrEMBL
Match: A0A0A0KG90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318150 PE=4 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 4.3e-83 Identity = 172/201 (85.57%), Postives = 182/201 (90.55%), Query Frame = 0
Query: 1 MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAAL 60
MD+SLVAGTLSMVANN +GFAK LNRLD +SNY S TDSITDQIPPSS A AL+LSAAL
Sbjct: 1 MDSSLVAGTLSMVANNSIGFAKLLNRLDFVSNYCISVTDSITDQIPPSSTAAALRLSAAL 60
Query: 61 FPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGFDGGDFDGPYGGD 120
FPVATIAPPPVKS+S RS+SR FLRRKRRTKRRLYS DDSEG ED+GF GGDFDGP GGD
Sbjct: 61 FPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYS-DDSEGREDDGFGGGDFDGPIGGD 120
Query: 121 GGG-GGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRF 180
GGG GGGRGWNFDRF G+DWDESSSSS+S NPAYYFVYEVVCWIALSNCVHFAFKKVVRF
Sbjct: 121 GGGSGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRF 180
Query: 181 AAEAIGNSERVKLFLRLISVC 201
AAEAIGNSER KL +RLISVC
Sbjct: 181 AAEAIGNSERGKLAMRLISVC 200
BLAST of CmoCh17G003320 vs. ExPASy TrEMBL
Match: A0A6J1CBL0 (uncharacterized protein LOC111009719 OS=Momordica charantia OX=3673 GN=LOC111009719 PE=4 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 3.6e-82 Identity = 171/200 (85.50%), Postives = 183/200 (91.50%), Query Frame = 0
Query: 1 MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAAL 60
MD+SLVAGTLSM ANNG+GFAKFLNRLD +SNY SA+DSIT+QIPPSSAAGALQLSAAL
Sbjct: 1 MDSSLVAGTLSMAANNGLGFAKFLNRLDFVSNYCVSASDSITEQIPPSSAAGALQLSAAL 60
Query: 61 FPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGFDGGDFDGPYGGD 120
FPVATIAPPPVKSIS RS+SR FLRRKRRTKRRLYS DDSEGGED+GF G +FDG YGG
Sbjct: 61 FPVATIAPPPVKSISRRSASRTFLRRKRRTKRRLYS-DDSEGGEDDGFGGDNFDGSYGG- 120
Query: 121 GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180
GGGG GRGWNFDRF G+DWDESSSSS+ NPAYYFVYEVVCWIALSNCVHFAFKKVVRFA
Sbjct: 121 GGGGSGRGWNFDRFGGNDWDESSSSSSPSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180
Query: 181 AEAIGNSERVKLFLRLISVC 201
A+AIGNSER KL +RLISVC
Sbjct: 181 ADAIGNSERGKLSMRLISVC 198
BLAST of CmoCh17G003320 vs. ExPASy TrEMBL
Match: A0A1S3C7S8 (uncharacterized protein LOC103497828 OS=Cucumis melo OX=3656 GN=LOC103497828 PE=4 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 6.2e-82 Identity = 170/201 (84.58%), Postives = 181/201 (90.05%), Query Frame = 0
Query: 1 MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAAL 60
MD+SLVAGTLSMVANN +GFAK LNRLD +SNY SATDSITDQIP SS A +L+LSAAL
Sbjct: 1 MDSSLVAGTLSMVANNSIGFAKLLNRLDFVSNYCISATDSITDQIPSSSTAASLRLSAAL 60
Query: 61 FPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGFDGGDFDGPYGGD 120
FPVATIAPPPVKS+S RS+SR FLRRKRRTKRRLYS DDSEG ED+GF GGDFDGPYGGD
Sbjct: 61 FPVATIAPPPVKSVSNRSASRTFLRRKRRTKRRLYS-DDSEGREDDGFGGGDFDGPYGGD 120
Query: 121 -GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRF 180
GGGGGGRGWNFDRF G+DWDESS SS+S NPAYYFVYEVVCWIALSNCVHFAFKKVVRF
Sbjct: 121 GGGGGGGRGWNFDRFGGNDWDESSFSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRF 180
Query: 181 AAEAIGNSERVKLFLRLISVC 201
AAEA GNSER KL +RLISVC
Sbjct: 181 AAEAFGNSERGKLSMRLISVC 200
BLAST of CmoCh17G003320 vs. TAIR 10
Match: AT3G06780.1 (glycine-rich protein ) HSP 1 Score: 132.9 bits (333), Expect = 2.9e-31 Identity = 98/212 (46.23%), Postives = 131/212 (61.79%), Query Frame = 0
Query: 1 MDTSLVAGTLSM-VANNGVGFAK-FLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSA 60
M+ SL+A T+++ A G+ F K L RLD+ ++ SF+ DS+ D P G +Q SA
Sbjct: 1 MEFSLIADTVTVCTAKQGIAFGKSLLQRLDLANHISFA--DSVVDHQSP--GGGIVQASA 60
Query: 61 ALFPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGF----DGGDFD 120
+FPV IAPPPV+S S ++ R +R+KRRT+R + GD + G+ F D G D
Sbjct: 61 IIFPVDAIAPPPVRSSSYKTIRR--IRKKRRTRRVSFGGDGDDAGDFGRFLLEGDFGGSD 120
Query: 121 GPYGGDGGG--GGGRGWNF----DRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNC 180
GP+G GGG GGG+GWN+ F +WD SS SS S +PA FVYEV+CWIALSNC
Sbjct: 121 GPFGFGGGGNDGGGKGWNYGGGGGGFGRDNWDGSSFSSWS-DPAMEFVYEVICWIALSNC 180
Query: 181 VHFAFKKVVRFAAEAIGNSERVKLFLRLISVC 201
VHFAFK++VR + + ER KL + L VC
Sbjct: 181 VHFAFKRIVRI----VTDGEREKLNIALSPVC 201
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1H560 | 1.4e-102 | 100.00 | uncharacterized protein LOC111460236 OS=Cucurbita moschata OX=3662 GN=LOC1114602... | [more] |
| A0A6J1KZI4 | 4.0e-97 | 95.50 | uncharacterized protein LOC111499005 OS=Cucurbita maxima OX=3661 GN=LOC111499005... | [more] |
| A0A0A0KG90 | 4.3e-83 | 85.57 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318150 PE=4 SV=1 | [more] |
| A0A6J1CBL0 | 3.6e-82 | 85.50 | uncharacterized protein LOC111009719 OS=Momordica charantia OX=3673 GN=LOC111009... | [more] |
| A0A1S3C7S8 | 6.2e-82 | 84.58 | uncharacterized protein LOC103497828 OS=Cucumis melo OX=3656 GN=LOC103497828 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G06780.1 | 2.9e-31 | 46.23 | glycine-rich protein | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 94..119 |
| None | No IPR available | PANTHER | PTHR36751 | F3E22.8 PROTEIN | coord: 1..200 |
Relationships
The following mRNA feature(s) are a part of this gene:
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