CmoCh17G003310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G003310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	multiple organellar RNA editing factor 3, mitochondrial
Location	Cmo_Chr17: 1996016 .. 1999797 (+)
RNA-Seq Expression	CmoCh17G003310
Synteny	CmoCh17G003310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTCGGCGAACATTTTTCACTGTCCTTAGCCGAAGCTTCTCCTCTTCTTCTTCTTCTTCCTTCTCTCTTCCGTCTTCTATTTCTTCTCGCCTGAGATTTGCTTTTCCTCTGCTCGACAGACAGAGTCGAATAATCCCTAATTCATTCAATTTTCCAGTTCGATTCAGGACTTCGGGGTCCGGATACTCTCCACTCAATGATCCTTCTCCTAATTGGAGCAATCGACCTCCAAAAGAGACGATACTCCTCGATGGCTGTGATTACGAGCATTGGCTGATCGTGATGGAGTTTCCAAATGATCCGAAACCATCGGAGGAGGAGATGGTGAACTCTTATGTCAAAACTCTAGCCGCTGTTGTGGGAAGGTATCGGAATGAAACAACTTATTATATGCGGATTACTTATTGGTGTGTCTTTTGCTTGGATTATCTTGTTTGTTGATTTTAGGGTTTTCGTTTTCTTCTGATTCTCAGTGAAGAAGAGGCGAAGAAGAAAATTTACTCTGTCAGTACAACTACGTATACTGGCTTTGGTGCCTTGATTTCGGAAGAGCTTTCTTACAAAGTGAAAGGTAATAGTTTCTGTGCGCGTTATGATTAGATGAAGGAGCCTTGGGAATTTGATTTGTTCTTCTTTTATTTGTTTGGATTTTTTCGATTATTTGGATTACAATTGAAGATTGAAAATTGTAGTTTTGAGCTCAAGCGCCTCATATGTTTGATGAAAGTTCCCTCATGAATTTGATTAGTTAAAGCTCCCATTAATAATCATAGCTTGTTTTTTTTGTCTCATTTTCTTGATTATGGTACTCATTTGAATTCTTATCAAAAATTGGTTTGTATGTTGAAACCAAATAGGTGGAACTAGAGATAAGCTTAATTTTCAATAACCAAAAACCCAAAAATCAATTAGTTATCAAACTACGCTTAAGAACTTTCCCATGAAGTTTGCTGTAGAATTCACTCGGGTATTGGTTTGTATTATTTTGTGACATTTTTTGGAAGAACTTTTCCCTTTCTATTTTGTTGTGCTTTAGTGTAACAACCCAGCCTACCGCTAGCCGATATTGTCTTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAAGCTTTAAAACGTGTATGCCAGGGGAAGGTTTCCACACCCTTATAAATGGTGGTTTGTTCTCCCCCAACCAATGGACCCCCAACCAATATGGGACATCACAATCCACCCCCCTTCGGGACCCAACGTCCTGGCACTCTTTCCTTCCTCCAATCGATGTGGGACCGCCCCCAAATCCACCCTCCTTTGGGGCTCAGCGTCCTTGCTGGCACACCGCCTCGTGTCTACCCCCTTTGGGGAACAATGAAAAGGCTGGCACATCGTCCGATGTTTGGCTCTGATACCATTCGGGCTTCTCCTCACCCTTTTGGCTCTGTAACGACCCAGGCCCACCGCTAGCAGATATTATCCTCTTTGGGCTTTCCTTTTTGGGCTTCCCCTCAAAGCTTTAAAACGCGTATGCTAGGGGAAGGTTTCCACATCCTTATAAATGGTGGTTTGTTCTCCTCCCCAACTAACGTAGGACATCGCATCTAGAATCAACTCGATTATAGTTTTATCATTCTTGTGTTACCAGTATGAAGGTTTGACATTGTTTTGTGATAATTTCTATTTGGTTTTTGTAAAGAACAATATTGGGTGACTTGAGCTCTTTGTTCCCATGAAACAGAATTGCCAGGAGTTCTATGGGTTTTACCAGATTCATATCTTGATGTTCCAAACAAAGATTATGGAGGTGATTACTCTTCTAAACTCTATGGAATTGTTATAAATTGGAACCAGTTGATTTCTCAAGTTAAATGCTCATTGCTTGTACGAGTTTTTCGTGTTGTTTTCAGGCGATTTGTTCATTGATGGAAAGGTCTACCCAAGACCGCAGTTTAGGTACACCGAGAGGCAACAATCTGGTAGAGTTAGGCCTCGTCCACGGTACGATAGACGCCGAGAAACTATGCAAGTTGAACGGAGCCAACCGATTCAGAGACAAAGCTGGGGTCAAGACCAGAGAGATCCAATGCAGCAACCACCACCATCCATGGACGGTCAAAATACAGCTCGAAGTGGTGTCGGAGATTTCTCGACAAACCCAGGCGAGTTTAATCGGGGTAATCACTGATTGATGAATGCTTGAAAATTTGAATATTTATCGGTTCCTTAATGCATGAAGTTTAGGCATCATATGTCTAGATTGGTCTGGATTTTTGTCACTCCTCTACCTATCATATGAGATTTCTACGAGTTCTTAATACTCTTAGATCAAGTCTAGACATCATAATATCTAGCATCTAAATGCATTGAAATGTGAATATTTAGTATGTTGACTAGAATCCTTGATATTGGGAAATGATTGAACTACATTGATCTTTCCTTCTTCTTGGTTGTTCTCTCATTGTTTACCAGCTGATCTGATGAAATTTCACATGATTTTGTTATTTATTTATTTTGATCTTCATTTGGTTTTGCCTTCTTATAACTTTTGTTTTTCCTATTTATTATTTTATGAATGAGTAGAGGAGATTCAAACTTATGTGATGGGAAGCTCTTGTGCCTGAGTTGTTACGGAGGTCGGGTTATATATCCTTAGTTTTAAATGTTTGTAGTGAGTAGTTTTGTGCCAAAATCTGAATTATTGAATAATTCAAATGAAATATGGCCATCGGTCGGTTATAGTTACATAAACTAGTTGTTGCCGCCCAAACTCATTGCTAGTAGATCTTGTCTGCTTTGGTCCGTTACACATCGTCGTTAGCCTCACAGTTTTAAAATGCCTCTTCTAGGGAGAGATTTTTACGCTCTTATAAGTAATATTTCGCTGGGATCACACTAGGTGTGTTCTTATTCTATTGGTAAGAATTACTTTCGCCAATAATTTTCTTGTTAAGTGAGGAAGCTGATTGAGAGCGGACTTGCGATTGTGCGGCACTTACTTCCCAGCAACAAGTGAGTTAAGTTTATTCGTTGTTGCGTCGTCTACAGCCAAGCGACGTATGCTCGAGCCTCCGGCACCCGTTCAAGAAGAAAGTTCTTCCTAGTAAAGTGAGTTAAGCCTATTCGTTCTTGCATTGTTTACGGCCAAGTAGCCAAGCGACGTATGCTCAAGTCTCTGGCCCCAGTTCAAGAAGAAAGTTTTAGCAAACGGGGGCGGAGAGATTTCAAAAGAGGGTTTTGGAAAACAAGATTTGAGAAATTGAAATTGACTTTATATGGGAAAGTAAGCAAGAGATTTCGAAAGACGGTTTTGGAAAACAAGATTTGAGAAGACGAACGAAGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCGTCCCCAAAAGGCCTCATACCAATAGAGAGTGTATTCTTAGATTATTCTTAGATTATAAACTCATGATCATTCCCTGAGAGATGAGATTTCGAAAGAGGGTTTTAGAAAACAAGATTTGAGAAATTGAAATTGACTTTATTATGAGAAAGTAAGCGAAAGACAACAATGATAGCTTACTACATATAACTGATTTGAGAAATTGACGTTATTATGAGAAAGTAAGCAAAAGATAATAATGACAGTTTACTACATATAACTATCGAGGATAATCTAAGGTAAGACCAAAAATCAAAATGACTCCCGTCATAGGACATTGCCCTTTCAAATTTAGCCGTTTCAAATTTACAGGGTTTTCCTAATTAAGGTTTTTTTTTTAGGTTTCAAATTAA

mRNA sequence

ATGGCCGCTCGGCGAACATTTTTCACTGTCCTTAGCCGAAGCTTCTCCTCTTCTTCTTCTTCTTCCTTCTCTCTTCCGTCTTCTATTTCTTCTCGCCTGAGATTTGCTTTTCCTCTGCTCGACAGACAGAGTCGAATAATCCCTAATTCATTCAATTTTCCAGTTCGATTCAGGACTTCGGGGTCCGGATACTCTCCACTCAATGATCCTTCTCCTAATTGGAGCAATCGACCTCCAAAAGAGACGATACTCCTCGATGGCTGTGATTACGAGCATTGGCTGATCGTGATGGAGTTTCCAAATGATCCGAAACCATCGGAGGAGGAGATGGTGAACTCTTATGTCAAAACTCTAGCCGCTGTTGTGGGAAGGTATCGGAATGAAACAACTTATTATATGCGGATTACTTATTGGTGTGTCTTTTGCTTGGATTATCTTGGTTTTCGTTTTCTTCTGATTCTCAGTGAAGAAGAGGCGAAGAAGAAAATTTACTCTGTCAGTACAACTACGTATACTGGCTTTGGTGCCTTGATTTCGGAAGAGCTTTCTTACAAAGTGAAAGAATTGCCAGGAGTTCTATGGGTTTTACCAGATTCATATCTTGATGTTCCAAACAAAGATTATGGAGGTGATTACTCTTCTAAACTCTATGGAATTGTTATAAATTGGAACCAGTTGATTTCTCAAGTTAAATGCTCATTGCTTGTACGAGCGATTTGTTCATTGATGGAAAGGTCTACCCAAGACCGCAGTTTAGGTACACCGAGAGGCAACAATCTGGTAGAGTTAGGCCTCGTCCACGGTACGATAGACGCCGAGAAACTATGCAAGTTGAACGGAGCCAACCGATTCAGAGACAAAGCTGGGGTCAAGACCAGAGAGATCCAATGCAGCAACCACCACCATCCATGGACGGTCAAAATACAGCTCGAAGTGGTGTCGGAGATTTCTCGACAAACCCAGGCGAGTTTAATCGGGGTTTCAAATTAA

Coding sequence (CDS)

ATGGCCGCTCGGCGAACATTTTTCACTGTCCTTAGCCGAAGCTTCTCCTCTTCTTCTTCTTCTTCCTTCTCTCTTCCGTCTTCTATTTCTTCTCGCCTGAGATTTGCTTTTCCTCTGCTCGACAGACAGAGTCGAATAATCCCTAATTCATTCAATTTTCCAGTTCGATTCAGGACTTCGGGGTCCGGATACTCTCCACTCAATGATCCTTCTCCTAATTGGAGCAATCGACCTCCAAAAGAGACGATACTCCTCGATGGCTGTGATTACGAGCATTGGCTGATCGTGATGGAGTTTCCAAATGATCCGAAACCATCGGAGGAGGAGATGGTGAACTCTTATGTCAAAACTCTAGCCGCTGTTGTGGGAAGGTATCGGAATGAAACAACTTATTATATGCGGATTACTTATTGGTGTGTCTTTTGCTTGGATTATCTTGGTTTTCGTTTTCTTCTGATTCTCAGTGAAGAAGAGGCGAAGAAGAAAATTTACTCTGTCAGTACAACTACGTATACTGGCTTTGGTGCCTTGATTTCGGAAGAGCTTTCTTACAAAGTGAAAGAATTGCCAGGAGTTCTATGGGTTTTACCAGATTCATATCTTGATGTTCCAAACAAAGATTATGGAGGTGATTACTCTTCTAAACTCTATGGAATTGTTATAAATTGGAACCAGTTGATTTCTCAAGTTAAATGCTCATTGCTTGTACGAGCGATTTGTTCATTGATGGAAAGGTCTACCCAAGACCGCAGTTTAGGTACACCGAGAGGCAACAATCTGGTAGAGTTAGGCCTCGTCCACGGTACGATAGACGCCGAGAAACTATGCAAGTTGAACGGAGCCAACCGATTCAGAGACAAAGCTGGGGTCAAGACCAGAGAGATCCAATGCAGCAACCACCACCATCCATGGACGGTCAAAATACAGCTCGAAGTGGTGTCGGAGATTTCTCGACAAACCCAGGCGAGTTTAATCGGGGTTTCAAATTAA

Protein sequence

MAARRTFFTVLSRSFSSSSSSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFPVRFRTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAVVGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKELPGVLWVLPDSYLDVPNKDYGGDYSSKLYGIVINWNQLISQVKCSLLVRAICSLMERSTQDRSLGTPRGNNLVELGLVHGTIDAEKLCKLNGANRFRDKAGVKTREIQCSNHHHPWTVKIQLEVVSEISRQTQASLIGVSN

Homology

[Close]

BLAST of CmoCh17G003310 vs. ExPASy Swiss-Prot
Match: Q84JZ6 (Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF3 PE=1 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 6.0e-63
Identity = 133/213 (62.44%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 1   MAARRTFFTVLSRSFSSSSSSSFSLPSSISSRLRFAFPLLDR--QSRIIPNSFNFPVRFR 60
           ++ RRT  T+L+++ SSS+S S S P ++SSR RFA PL+++   SR          R +
Sbjct: 4   ISTRRTLSTLLNKTLSSSTSYSSSFP-TLSSRSRFAMPLIEKVSSSRTSLGPCYISTRPK 63

Query: 61  TSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTL 120
           TSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF  DPKP+EEEM+NSYVKTL
Sbjct: 64  TSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF-TDPKPTEEEMINSYVKTL 123

Query: 121 AAVVGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALI 180
            +V+G                                EEEAKKKIYSV T+TYTGFGALI
Sbjct: 124 TSVLG-------------------------------CEEEAKKKIYSVCTSTYTGFGALI 183

Query: 181 SEELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 212
           SEELS KVK LPGVLWVLPDSYLDVPNKDYGGD
Sbjct: 184 SEELSCKVKALPGVLWVLPDSYLDVPNKDYGGD 183

[Close]

BLAST of CmoCh17G003310 vs. ExPASy Swiss-Prot
Match: Q9LKA5 (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF8 PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-40
Identity = 96/202 (47.52%), Postives = 127/202 (62.87%), Query Frame = 0


Query: 10  VLSRSFSSSSSSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFPVRFRTSGSGYSPLND 69
           + +RSF+SS+  + S  SS+ SR R   PL+   S +        V+  ++ +  S LND
Sbjct: 21  LFTRSFASSAPLAKSPASSLLSRSR---PLVAAFSSVFRGGL-VSVKGLSTQATSSSLND 80

Query: 70  PSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAVVGRYRNET 129
           P+PNWSNRPPKETILLDGCD+EHWL+V+E P   +P+ +E+++SY+KTLA +VG      
Sbjct: 81  PNPNWSNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVG------ 140

Query: 130 TYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 189
                                    SE+EA+ KIYSVST  Y  FGAL+SE+LS+K+KEL
Sbjct: 141 -------------------------SEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKEL 186

Query: 190 PGVLWVLPDSYLDVPNKDYGGD 212
             V WVLPDSYLDV NKDYGG+
Sbjct: 201 SNVRWVLPDSYLDVRNKDYGGE 186

[Close]

BLAST of CmoCh17G003310 vs. ExPASy Swiss-Prot
Match: Q38732 (DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-33
Identity = 84/185 (45.41%), Postives = 103/185 (55.68%), Query Frame = 0


Query: 28  SISSRLRFAFPLLDRQSRIIPNSFNFP-VRFRTSGSGYSPLNDPSPNWSNRPPKETILLD 87
           SI S    +F    R   I   S  +P VR  T G   S  N+ + N  +   +ETI+L 
Sbjct: 25  SILSTSSLSFLPCTRPHPIKSRSAAYPTVRALTDGEYSSRRNNNNNN--SGEERETIMLP 84

Query: 88  GCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAVVGRYRNETTYYMRITYWCVFCLDYL 147
           GCDY HWLIVMEFP DP P+ E+M+++Y+ TLA V+G                       
Sbjct: 85  GCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLG----------------------- 144

Query: 148 GFRFLLILSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKELPGVLWVLPDSYLDVPNK 207
                   S EEAKK +Y+ STTTYTGF   ++EE S K K LPGVLWVLPDSY+DV NK
Sbjct: 145 --------SMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNK 176

Query: 208 DYGGD 212
           DYGGD
Sbjct: 205 DYGGD 176

[Close]

BLAST of CmoCh17G003310 vs. ExPASy Swiss-Prot
Match: Q9LPZ1 (Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MORF9 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.2e-32
Identity = 90/211 (42.65%), Postives = 111/211 (52.61%), Query Frame = 0


Query: 14  SFSSSSSSSFSLPS--SISSRLRFA-----------FPLLDRQSRIIPNSFNFPVRFRTS 73
           SF+++SSSS  L +   +S   RF+            PLL   S          V+  T 
Sbjct: 3   SFTTTSSSSLLLKTLLPVSHLNRFSTLSGIRVGDSWTPLLRNISTAGSRRRVAIVKAATV 62

Query: 74  GSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAA 133
            S YS     S   ++   +ETI+L GCDY HWLIVMEFP DP PS ++M+++Y+ TLA 
Sbjct: 63  DSDYS-----SKRSNSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLAT 122

Query: 134 VVGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALISE 193
           V+G                               S EEAKK +Y+ STTTYTGF   I E
Sbjct: 123 VLG-------------------------------SMEEAKKNMYAFSTTTYTGFQCTIDE 177

Query: 194 ELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 212
           E S K K LPGVLWVLPDSY+DV NKDYGGD
Sbjct: 183 ETSEKFKGLPGVLWVLPDSYIDVKNKDYGGD 177

[Close]

BLAST of CmoCh17G003310 vs. ExPASy Swiss-Prot
Match: O82169 (Multiple organellar RNA editing factor 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF6 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.4e-29
Identity = 91/215 (42.33%), Postives = 114/215 (53.02%), Query Frame = 0


Query: 3   ARRTFFTVLSRSFSSSS--SSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFP---VRF 62
           +R T   V  R FS+S+  +S   LPS + SR RF+ P +      IP    F     R 
Sbjct: 6   SRSTASCVAKRFFSTSNAVASPSPLPSHLISR-RFS-PTIFHAVGYIPALTRFTTIRTRM 65

Query: 63  RTSGSGYSPLNDPSPNWSNRPPKETI-LLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVK 122
             SG  YSPL   S N+S+RPP E   L  GCDYEHWLIVME P      +++M++ YV+
Sbjct: 66  DRSGGSYSPLKSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQ 125

Query: 123 TLAAVVGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGA 182
           TLA +VG                               SEEEA+KKIY+VS   Y GFG 
Sbjct: 126 TLAKIVG-------------------------------SEEEARKKIYNVSCERYFGFGC 185

Query: 183 LISEELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 212
            I EE S K++ LPGVL+VLPDSY+D   KDYG +
Sbjct: 186 EIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAE 186

[Close]

BLAST of CmoCh17G003310 vs. ExPASy TrEMBL
Match: A0A6J1H5X4 (multiple organellar RNA editing factor 3, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111460412 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.1e-91
Identity = 180/211 (85.31%), Postives = 180/211 (85.31%), Query Frame = 0


Query: 1   MAARRTFFTVLSRSFSSSSSSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFPVRFRTS 60
           MAARRTFFTVLSRSFSSSSSSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFPVRFRTS
Sbjct: 1   MAARRTFFTVLSRSFSSSSSSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFPVRFRTS 60

Query: 61  GSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAA 120
           GSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAA
Sbjct: 61  GSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAA 120

Query: 121 VVGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALISE 180
           VVG                               SEEEAKKKIYSVSTTTYTGFGALISE
Sbjct: 121 VVG-------------------------------SEEEAKKKIYSVSTTTYTGFGALISE 180

Query: 181 ELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 212
           ELSYKVKELPGVLWVLPDSYLDVPNKDYGGD
Sbjct: 181 ELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 180

[Close]

BLAST of CmoCh17G003310 vs. ExPASy TrEMBL
Match: A0A6J1L4U9 (multiple organellar RNA editing factor 3, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111499149 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 2.4e-86
Identity = 173/211 (81.99%), Postives = 174/211 (82.46%), Query Frame = 0


Query: 1   MAARRTFFTVLSRSFSSSSSSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFPVRFRTS 60
           MAARR FFTVLSRSF  SSSSS S PSSISSRLR AFPLLDRQS+IIPNSFNFPVRFRTS
Sbjct: 1   MAARRAFFTVLSRSF--SSSSSLSHPSSISSRLRLAFPLLDRQSQIIPNSFNFPVRFRTS 60

Query: 61  GSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAA 120
           GSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAA
Sbjct: 61  GSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAA 120

Query: 121 VVGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALISE 180
           VVG                               SEEEAKKKIYSVSTTTYTGFGALISE
Sbjct: 121 VVG-------------------------------SEEEAKKKIYSVSTTTYTGFGALISE 178

Query: 181 ELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 212
           ELSYKVKELPGVLWVLPDSYLDVPNKDYGGD
Sbjct: 181 ELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 178

[Close]

BLAST of CmoCh17G003310 vs. ExPASy TrEMBL
Match: A0A0A0KCH1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318670 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 3.3e-80
Identity = 164/213 (77.00%), Postives = 170/213 (79.81%), Query Frame = 0


Query: 2   AARRTFFTVLSRSF--SSSSSSSFSLPS-SISSRLRFAFPLLDRQSRIIPNSFNFPVRFR 61
           A RRT FTVLSRS   SSSSSSSF LPS  ISSRLRFAFPLL+RQ +IIP SFN P+RF+
Sbjct: 5   ATRRTLFTVLSRSISSSSSSSSSFLLPSPPISSRLRFAFPLLNRQDQIIPASFNLPIRFK 64

Query: 62  TSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTL 121
            SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIV+EFPNDPKPSEEEMVN+YVKTL
Sbjct: 65  ASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVLEFPNDPKPSEEEMVNTYVKTL 124

Query: 122 AAVVGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALI 181
           AAVVG                               SEEEAKKKIYSVSTTTYTGFGALI
Sbjct: 125 AAVVG-------------------------------SEEEAKKKIYSVSTTTYTGFGALI 184

Query: 182 SEELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 212
           SEELSYKVKELPGVLWVLPDSYLDVPNKDYGGD
Sbjct: 185 SEELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 186

[Close]

BLAST of CmoCh17G003310 vs. ExPASy TrEMBL
Match: A0A6J1C9B1 (multiple organellar RNA editing factor 3, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111009569 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 4.0e-78
Identity = 156/210 (74.29%), Postives = 166/210 (79.05%), Query Frame = 0


Query: 2   AARRTFFTVLSRSFSSSSSSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFPVRFRTSG 61
           A RRT FTVL+RS S SSS SFS P  +SSRLRFAF L++R  +I PN+FN P+RF+TSG
Sbjct: 5   ATRRTLFTVLTRSRSFSSSFSFSSP--VSSRLRFAFALINRLGQIAPNAFNLPIRFKTSG 64

Query: 62  SGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAV 121
           SGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIV+EFPNDPKPSEEEMVNSY+KTLAAV
Sbjct: 65  SGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVLEFPNDPKPSEEEMVNSYIKTLAAV 124

Query: 122 VGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALISEE 181
           VG                               SEEEAKKKIYSVSTTTYTGFGALISEE
Sbjct: 125 VG-------------------------------SEEEAKKKIYSVSTTTYTGFGALISEE 181

Query: 182 LSYKVKELPGVLWVLPDSYLDVPNKDYGGD 212
           LSYKVKELPGVLWVLPDSYLDVPNKDYGGD
Sbjct: 185 LSYKVKELPGVLWVLPDSYLDVPNKDYGGD 181

[Close]

BLAST of CmoCh17G003310 vs. ExPASy TrEMBL
Match: A0A1S3C8E0 (multiple organellar RNA editing factor 3, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103497830 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 4.0e-78
Identity = 161/212 (75.94%), Postives = 167/212 (78.77%), Query Frame = 0


Query: 2   AARRTFFTVLSRSF--SSSSSSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFPVRFRT 61
           A RRT FTVLSRS   SSSSSSSF L S ISSRLRFAFPLL+RQ +IIP SFN P+RF+ 
Sbjct: 5   ATRRTLFTVLSRSLSASSSSSSSFLLSSPISSRLRFAFPLLNRQDQIIPTSFNLPIRFKA 64

Query: 62  SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA 121
           SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIV+EFP DPKPSEEEMVN+YVKTLA
Sbjct: 65  SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVLEFP-DPKPSEEEMVNTYVKTLA 124

Query: 122 AVVGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALIS 181
           AVVG                               SEEEAK KIYSVSTTTYTGFGALIS
Sbjct: 125 AVVG-------------------------------SEEEAKTKIYSVSTTTYTGFGALIS 184

Query: 182 EELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 212
           EELSYKVKELPGVLWVLPDSYLDVPNKDYGGD
Sbjct: 185 EELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 184

[Close]

BLAST of CmoCh17G003310 vs. TAIR 10
Match: AT3G06790.2 (plastid developmental protein DAG, putative )

HSP 1 Score: 242.7 bits (618), Expect = 4.3e-64
Identity = 133/213 (62.44%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 1   MAARRTFFTVLSRSFSSSSSSSFSLPSSISSRLRFAFPLLDR--QSRIIPNSFNFPVRFR 60
           ++ RRT  T+L+++ SSS+S S S P ++SSR RFA PL+++   SR          R +
Sbjct: 4   ISTRRTLSTLLNKTLSSSTSYSSSFP-TLSSRSRFAMPLIEKVSSSRTSLGPCYISTRPK 63

Query: 61  TSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTL 120
           TSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF  DPKP+EEEM+NSYVKTL
Sbjct: 64  TSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF-TDPKPTEEEMINSYVKTL 123

Query: 121 AAVVGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALI 180
            +V+G                                EEEAKKKIYSV T+TYTGFGALI
Sbjct: 124 TSVLG-------------------------------CEEEAKKKIYSVCTSTYTGFGALI 183

Query: 181 SEELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 212
           SEELS KVK LPGVLWVLPDSYLDVPNKDYGGD
Sbjct: 184 SEELSCKVKALPGVLWVLPDSYLDVPNKDYGGD 183

[Close]

BLAST of CmoCh17G003310 vs. TAIR 10
Match: AT3G06790.1 (plastid developmental protein DAG, putative )

HSP 1 Score: 241.5 bits (615), Expect = 9.5e-64
Identity = 133/213 (62.44%), Postives = 152/213 (71.36%), Query Frame = 0


Query: 1   MAARRTFFTVLSRSFSSSSSSSFSLPSSISSRLRFAFPLLDR--QSRIIPNSFNFPVRFR 60
           ++ RRT  T+L+++ SSS+S S S P ++SSR RFA PL+++   SR          R +
Sbjct: 4   ISTRRTLSTLLNKTLSSSTSYSSSFP-TLSSRSRFAMPLIEKVSSSRTSLGPCYISTRPK 63

Query: 61  TSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTL 120
           TSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF  DPKP+EEEM+NSYVKTL
Sbjct: 64  TSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF-TDPKPTEEEMINSYVKTL 123

Query: 121 AAVVGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALI 180
            +V+G              W                 +EEAKKKIYSV T+TYTGFGALI
Sbjct: 124 TSVLG--------------W-----------------QEEAKKKIYSVCTSTYTGFGALI 183

Query: 181 SEELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 212
           SEELS KVK LPGVLWVLPDSYLDVPNKDYGGD
Sbjct: 184 SEELSCKVKALPGVLWVLPDSYLDVPNKDYGGD 183

[Close]

BLAST of CmoCh17G003310 vs. TAIR 10
Match: AT3G15000.1 (cobalt ion binding )

HSP 1 Score: 168.7 bits (426), Expect = 7.8e-42
Identity = 96/202 (47.52%), Postives = 127/202 (62.87%), Query Frame = 0


Query: 10  VLSRSFSSSSSSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFPVRFRTSGSGYSPLND 69
           + +RSF+SS+  + S  SS+ SR R   PL+   S +        V+  ++ +  S LND
Sbjct: 21  LFTRSFASSAPLAKSPASSLLSRSR---PLVAAFSSVFRGGL-VSVKGLSTQATSSSLND 80

Query: 70  PSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAVVGRYRNET 129
           P+PNWSNRPPKETILLDGCD+EHWL+V+E P   +P+ +E+++SY+KTLA +VG      
Sbjct: 81  PNPNWSNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVG------ 140

Query: 130 TYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 189
                                    SE+EA+ KIYSVST  Y  FGAL+SE+LS+K+KEL
Sbjct: 141 -------------------------SEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKEL 186

Query: 190 PGVLWVLPDSYLDVPNKDYGGD 212
             V WVLPDSYLDV NKDYGG+
Sbjct: 201 SNVRWVLPDSYLDVRNKDYGGE 186

[Close]

BLAST of CmoCh17G003310 vs. TAIR 10
Match: AT1G11430.1 (plastid developmental protein DAG, putative )

HSP 1 Score: 139.4 bits (350), Expect = 5.1e-33
Identity = 90/211 (42.65%), Postives = 111/211 (52.61%), Query Frame = 0


Query: 14  SFSSSSSSSFSLPS--SISSRLRFA-----------FPLLDRQSRIIPNSFNFPVRFRTS 73
           SF+++SSSS  L +   +S   RF+            PLL   S          V+  T 
Sbjct: 3   SFTTTSSSSLLLKTLLPVSHLNRFSTLSGIRVGDSWTPLLRNISTAGSRRRVAIVKAATV 62

Query: 74  GSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAA 133
            S YS     S   ++   +ETI+L GCDY HWLIVMEFP DP PS ++M+++Y+ TLA 
Sbjct: 63  DSDYS-----SKRSNSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLAT 122

Query: 134 VVGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGALISE 193
           V+G                               S EEAKK +Y+ STTTYTGF   I E
Sbjct: 123 VLG-------------------------------SMEEAKKNMYAFSTTTYTGFQCTIDE 177

Query: 194 ELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 212
           E S K K LPGVLWVLPDSY+DV NKDYGGD
Sbjct: 183 ETSEKFKGLPGVLWVLPDSYIDVKNKDYGGD 177

[Close]

BLAST of CmoCh17G003310 vs. TAIR 10
Match: AT2G35240.1 (plastid developmental protein DAG, putative )

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-30
Identity = 91/215 (42.33%), Postives = 114/215 (53.02%), Query Frame = 0


Query: 3   ARRTFFTVLSRSFSSSS--SSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFP---VRF 62
           +R T   V  R FS+S+  +S   LPS + SR RF+ P +      IP    F     R 
Sbjct: 6   SRSTASCVAKRFFSTSNAVASPSPLPSHLISR-RFS-PTIFHAVGYIPALTRFTTIRTRM 65

Query: 63  RTSGSGYSPLNDPSPNWSNRPPKETI-LLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVK 122
             SG  YSPL   S N+S+RPP E   L  GCDYEHWLIVME P      +++M++ YV+
Sbjct: 66  DRSGGSYSPLKSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQ 125

Query: 123 TLAAVVGRYRNETTYYMRITYWCVFCLDYLGFRFLLILSEEEAKKKIYSVSTTTYTGFGA 182
           TLA +VG                               SEEEA+KKIY+VS   Y GFG 
Sbjct: 126 TLAKIVG-------------------------------SEEEARKKIYNVSCERYFGFGC 185

Query: 183 LISEELSYKVKELPGVLWVLPDSYLDVPNKDYGGD 212
            I EE S K++ LPGVL+VLPDSY+D   KDYG +
Sbjct: 186 EIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAE 186

The following BLAST results are available for this feature:

BLAST of CmoCh17G003310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84JZ6	6.0e-63	62.44	Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana ...	[more]
Q9LKA5	1.1e-40	47.52	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabido...	[more]
Q38732	2.2e-33	45.41	DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1	[more]
Q9LPZ1	7.2e-32	42.65	Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana ...	[more]
O82169	7.4e-29	42.33	Multiple organellar RNA editing factor 6, mitochondrial OS=Arabidopsis thaliana ...	[more]

BLAST of CmoCh17G003310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H5X4	1.1e-91	85.31	multiple organellar RNA editing factor 3, mitochondrial OS=Cucurbita moschata OX...	[more]
A0A6J1L4U9	2.4e-86	81.99	multiple organellar RNA editing factor 3, mitochondrial OS=Cucurbita maxima OX=3...	[more]
A0A0A0KCH1	3.3e-80	77.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318670 PE=4 SV=1	[more]
A0A6J1C9B1	4.0e-78	74.29	multiple organellar RNA editing factor 3, mitochondrial-like OS=Momordica charan...	[more]
A0A1S3C8E0	4.0e-78	75.94	multiple organellar RNA editing factor 3, mitochondrial-like OS=Cucumis melo OX=...	[more]

BLAST of CmoCh17G003310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06790.2	4.3e-64	62.44	plastid developmental protein DAG, putative	[more]
AT3G06790.1	9.5e-64	62.44	plastid developmental protein DAG, putative	[more]
AT3G15000.1	7.8e-42	47.52	cobalt ion binding	[more]
AT1G11430.1	5.1e-33	42.65	plastid developmental protein DAG, putative	[more]
AT2G35240.1	5.3e-30	42.33	plastid developmental protein DAG, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31346:SF1	MULTIPLE ORGANELLAR RNA EDITING FACTOR 3, MITOCHONDRIAL	coord: 47..212
IPR039206	MORF/ORRM1/DAG-like	PANTHER	PTHR31346	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED	coord: 47..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G003310.1	CmoCh17G003310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016554	cytidine to uridine editing
biological_process	GO:0080156	mitochondrial mRNA modification
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005739	mitochondrion