CmoCh17G003300 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G003300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr17: 1995128 .. 1995379 (+)
RNA-Seq ExpressionCmoCh17G003300
SyntenyCmoCh17G003300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCTCGTGCTGACCTGGCAAAGATTGGAAGAGAAGGATTCGAACTAATTGACGAATACTTCGGTCGAGTACCGGCGACGAGAAGAGCGGCGGCGGCGGTGGCGAGGCCGGCTCTGCCGCAGGCGCCGTGTAAGGCGGAGCAACCTCCGAGGAAGATGAGAGAAAAGCTGCCTGTACCGGTGAACTGCAATCAGGTCGCCAGAGCCCGCGGCGGAGTTGTGATAACGACTTGGCGTGCGCCAAAATGA

mRNA sequence

ATGGCTCCTCGTGCTGACCTGGCAAAGATTGGAAGAGAAGGATTCGAACTAATTGACGAATACTTCGGTCGAGTACCGGCGACGAGAAGAGCGGCGGCGGCGGTGGCGAGGCCGGCTCTGCCGCAGGCGCCGTGTAAGGCGGAGCAACCTCCGAGGAAGATGAGAGAAAAGCTGCCTGTACCGGTGAACTGCAATCAGGTCGCCAGAGCCCGCGGCGGAGTTGTGATAACGACTTGGCGTGCGCCAAAATGA

Coding sequence (CDS)

ATGGCTCCTCGTGCTGACCTGGCAAAGATTGGAAGAGAAGGATTCGAACTAATTGACGAATACTTCGGTCGAGTACCGGCGACGAGAAGAGCGGCGGCGGCGGTGGCGAGGCCGGCTCTGCCGCAGGCGCCGTGTAAGGCGGAGCAACCTCCGAGGAAGATGAGAGAAAAGCTGCCTGTACCGGTGAACTGCAATCAGGTCGCCAGAGCCCGCGGCGGAGTTGTGATAACGACTTGGCGTGCGCCAAAATGA

Protein sequence

MAPRADLAKIGREGFELIDEYFGRVPATRRAAAAVARPALPQAPCKAEQPPRKMREKLPVPVNCNQVARARGGVVITTWRAPK
Homology
BLAST of CmoCh17G003300 vs. ExPASy TrEMBL
Match: A0A0A0KG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.0e-17
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 0

Query: 4  RADLAKIGREGFELIDEYFGRVPAT--RRAAAAVARPALPQAPCKAEQPPRKMREKLPVP 63
          R DLAKIGREGF++IDEYFGR  +T  RR AA  ARPALPQ P KAEQPPR  +EK    
Sbjct: 13 RGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPRIRKEKPVAA 72

Query: 64 VNCNQVARARGGVVITTWR 81
          V  +QVA+  GG VITTWR
Sbjct: 73 VTSDQVAKHGGGTVITTWR 91

BLAST of CmoCh17G003300 vs. ExPASy TrEMBL
Match: A0A0A0KI19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.5e-10
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 5  ADLAKIGREGFELIDEYFGRVPAT---RRAAAAVARPALPQAPCK-AEQPPRKMREKLPV 64
          A+LA+IG EGF+LID++FGR   T   R  AA   RPA  Q P K AEQPP K +EK   
Sbjct: 13 ANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPPSKTKEKQGA 72

Query: 65 PVNCNQVARARGGVVITTWRA 82
           V  + +A+ RGG+VITTWR+
Sbjct: 73 VVTSDHLAKTRGGIVITTWRS 93

BLAST of CmoCh17G003300 vs. ExPASy TrEMBL
Match: A0A5A7U5Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001240 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 4  RADLAKIGREGFELIDEYFGRVPATRRAAAAVARPALPQAPCKAEQPPRKMREKLPVPVN 63
          R DLA+IG E F LI+E++ R    RR    V  PA PQ P  A QPP++M E  P P+ 
Sbjct: 9  RNDLARIGVEAFALIEEHYDR---PRRRPRQVV-PAPPQ-PVVAIQPPKRMVESSP-PIR 68

Query: 64 CNQVARARGGVVITTW 80
          C+Q+A+A GG++I  W
Sbjct: 69 CDQLAKAHGGIIIKEW 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KG955.0e-1765.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1[more]
A0A0A0KI194.5e-1053.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1[more]
A0A5A7U5Q52.0e-0547.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G003300.1CmoCh17G003300.1mRNA