CmoCh17G002900 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G002900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionBRCT domain-containing protein
LocationCmo_Chr17: 1751798 .. 1752310 (-)
RNA-Seq ExpressionCmoCh17G002900
SyntenyCmoCh17G002900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTGACTGCTCAAATTTCTTTATAATAGAACGTTTGAGATTCGTTTGAAATAATTTTTGAAGTGCTTGAAAACAAATTTAAAATGTTATTAGAAAGTCATTTCAAATGAACTCTCAACCAACGATGAAATGAAGATCACATCCAAAAGCAATCAAATATCATTTGATGCTCGTGTCCTAATATTGTTGAATGATTATGCAGACATCGTCTTTTTGTAGATCATGTCAAGAGGACTCGTTCGACGATATGGCTCAAGAAAGGTGGAAATAAGTTCCATCCTGTTACCAAACGTCGATAACTTCGTTACATAATCGTCTTGCAGTGTATAGTATATGGTTTTGATGTGCTCTATGTATTAGATTTCATAGTTTAATGTAAATGCTTAGGCTAATAGGGTAAGTGCATGTTATAATTTTATTTATTAATCTTATTATCATAAGGTTATGCAAAATGCAATTATATTTTTATTTATTTTATTATCGAGTAACTTAATGTAATGATGCGATT

mRNA sequence

ATGGATCTTGACTGCTCAAATTTCTTTATAATAGAACGTTTGAGATTCAAAGTCATTTCAAATGAACTCTCAACCAACGATGAAATGAAGATCACATCCAAAAGCAATCAAATATCATTTGATGCTCGTGTCCTAATATTACATCGTCTTTTTGTAGATCATGTCAAGAGGACTCGTTCGACGATATGGCTCAAGAAAGGTGGAAATAAGTTCCATCCTGTTACCAAACGTCGATAACTTCGTTACATAATCGTCTTGCAGTGTATAGTATATGGTTTTGATGTGCTCTATGTATTAGATTTCATAGTTTAATGTAAATGCTTAGGCTAATAGGGTAAGTGCATGTTATAATTTTATTTATTAATCTTATTATCATAAGGTTATGCAAAATGCAATTATATTTTTATTTATTTTATTATCGAGTAACTTAATGTAATGATGCGATT

Coding sequence (CDS)

ATGGATCTTGACTGCTCAAATTTCTTTATAATAGAACGTTTGAGATTCAAAGTCATTTCAAATGAACTCTCAACCAACGATGAAATGAAGATCACATCCAAAAGCAATCAAATATCATTTGATGCTCGTGTCCTAATATTACATCGTCTTTTTGTAGATCATGTCAAGAGGACTCGTTCGACGATATGGCTCAAGAAAGGTGGAAATAAGTTCCATCCTGTTACCAAACGTCGATAA

Protein sequence

MDLDCSNFFIIERLRFKVISNELSTNDEMKITSKSNQISFDARVLILHRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR
Homology
[Close]
BLAST of CmoCh17G002900 vs. ExPASy TrEMBL
Match: A0A6J1H849 (uncharacterized protein LOC111460430 OS=Cucurbita moschata OX=3662 GN=LOC111460430 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.7e-09
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 48   HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
            HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR
Sbjct: 1104 HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 1134

[Close]
BLAST of CmoCh17G002900 vs. ExPASy TrEMBL
Match: A0A6J1KUR0 (uncharacterized protein LOC111498885 OS=Cucurbita maxima OX=3661 GN=LOC111498885 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-08
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 48   HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
            HRLFVDHVKRTRSTIWLKKGGNKFHPVTK R
Sbjct: 1257 HRLFVDHVKRTRSTIWLKKGGNKFHPVTKHR 1287

[Close]
BLAST of CmoCh17G002900 vs. ExPASy TrEMBL
Match: A0A6J1CA00 (uncharacterized protein LOC111009745 OS=Momordica charantia OX=3673 GN=LOC111009745 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 48   HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
            HRLFVDHVKRTRSTIWLKK GNKFHPV K +
Sbjct: 1045 HRLFVDHVKRTRSTIWLKKDGNKFHPVAKHQ 1075

[Close]
BLAST of CmoCh17G002900 vs. ExPASy TrEMBL
Match: A0A0A0KCR3 (BRCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G067940 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.8e-06
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 48   HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
            HR+FVDHVKRTRSTIWLKK GNKF PVTK +
Sbjct: 1123 HRIFVDHVKRTRSTIWLKKDGNKFQPVTKHQ 1153

[Close]
BLAST of CmoCh17G002900 vs. ExPASy TrEMBL
Match: A0A5A7STY9 (BRCT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001170 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.2e-06
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 48   HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
            HRLFVDH+KRTRSTIWLKK  NKF P+TKR+
Sbjct: 1116 HRLFVDHIKRTRSTIWLKKDDNKFQPITKRQ 1146

[Close]
BLAST of CmoCh17G002900 vs. TAIR 10
Match: AT3G21480.1 (BRCT domain-containing DNA repair protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.6e-04
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 0 

Query: 48   HRLFVDHVKRTRSTIWLKKGGNKF 72
            +RLF DHV+RTRSTIW+K G  KF
Sbjct: 1013 YRLFTDHVRRTRSTIWIKDGKGKF 1036

The following BLAST results are available for this feature:
BLAST of CmoCh17G002900 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G002900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H8494.7e-09100.00uncharacterized protein LOC111460430 OS=Cucurbita moschata OX=3662 GN=LOC1114604... [more]
A0A6J1KUR01.8e-0896.77uncharacterized protein LOC111498885 OS=Cucurbita maxima OX=3661 GN=LOC111498885... [more]
A0A6J1CA001.3e-0687.10uncharacterized protein LOC111009745 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A0A0KCR34.8e-0683.87BRCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G067940 PE=4 S... [more]
A0A5A7STY98.2e-0680.65BRCT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
BLAST of CmoCh17G002900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G21480.12.6e-0470.83BRCT domain-containing DNA repair protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G002900.1CmoCh17G002900.1mRNA