CmoCh17G002880 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G002880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	UDP-N-acetylmuramoylalanine--D-glutamate ligase
Location	Cmo_Chr17: 1739125 .. 1743561 (-)
RNA-Seq Expression	CmoCh17G002880
Synteny	CmoCh17G002880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAACAAATTTTCTCTCTGAAGCCGCTGGACGTCGCCGCTGTTAGCTCCGTAGCTTGAGCTCTGTAAGTATCTCTGAAGCGTCGAGGCATAAACCACTCTGTTTTCTTTTGGAAATTACAATGGATTCCGTTTTATAATCATGTTAATGCGTTTTGTTTTTGGATTCTCAGTTTAAATGAAGTTTCTAGGTTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGCTTCCATGGAAATGTTCATGATTAAAACGGGCTTCTGTGTGAGAACTCTCCTTCTTCTTCCTTATTCCTTAATTCACCATTTGAAATATTTTTCTTCACTGTATTTAGTTGATATGCTTGTTGTAATGGTTTTTTCGTCTTCATTTAGGTCTGTCTTTCGATAAATCTTATAGAATTGATTCGCTACGAGGATCTGAGGTGTTTGGTTAATAGTTCTTTACAATTTTTTTATGCTTTATGTCTAAGTAGATTGAAGAAATCTTGCTTTTCAATGAATGTCCACTAACGTTAGATTTTTCGTGTTCGAGACCACGAAGTAAGTAAGTGGTATTGAGTGGAAATTGTAACGAGCCACATGCTTCATGGGAATTCCCAACAGTTGTGGCAGCTGCTATTAATCTAACTGATAGTGATAAAACGTATTAGAATCCTGGATGTGCTTTCTTCAAATGTTTCATAGCTCTCCTAATTTAGTCTTTCTTCTTATTGTCTGAGTTGTTTCTACATATTTCTTGATTTGCCTCTTATTCTTCTTGTCCAAGTTCCTTATTAAAACCATCTTCTCTCATTCAAAGAAGGGAAGGTGTCGACAACTTGGGCACACAACTCAATTGGTTAACACATTGAATTATCGACCAAAATGTCAAAGGTTTGAATTCCTGCCCACATTGGTGTGTCATATCCATGAAAAATGCAGAAATTCCGAGCCAGCTCTTCATGACTTACCCCTTTGCCTATAGTTTATGGTCTTCATGAAAGGAAGCATTTGAATGGGCCATGACCCCAAGCTGCATTCATGACTTTCTTGCACTCATTATGTTGGGCCACCCTTTCAGAGGAGAGAAGAACAACAAGTATACAAGCTAGCAGTCTCCCACTATCTTAAACAACTGGAAAACTTTCTTGTAGTTTTATTTATGGGAAGGGGTTTAATAAATGTCATGTCATTTTTATCTAAAGAAACGAAAAAGTTAGCAGCCTCCTAGATGAGCAAAACCACTAGAATCATCTGAAATCTTTCCCACTGATAAGAGGAGAGCAGATAAAAGACTTAAACCGCCACAACCCACCAAACAAACAAGCAAAATCAGCAAAGCTAGTTGAGAGTGGGACTCTTCAACCGGACTAGAACACCCATACCAAACCAACCAAGGCACTGGAGAACCTTAAACCTTGAGAGACAAACACTTTTCTTTTTTATTGGATTCTTAAATATAAGAAAGTACTGATTCATTGGTGCATGCACACGTTGAGATTGATTTAATTGTAAACACCGTGAATCAGACTGAGCCTCTTTCTTCGTCCTCTGTTTCATGAGAAAGGAAAAATTTTGTTGCAAGCTGGGGCGTGTGCCATTGTTGGGGGTCTTTGAGGAGAAAGAAACAATAGTATTTTTAGAGGATATGAGAGACCTTTGAATGAGGTTGGGCCCTGTACTAGGCTCGATGGTTCCTTCTAGGCGTTTGGGGCTAAACCTATTGTAATTATTTATTAGGTCTTGTTGGATTGGAGCCCGTTCTTGTAGGTTACCTCCCTTCTTTTGTGGGCTCGTCTTTTTTGTATGCTCTTGTATTCTTTCATTTTTCCTCAATGAATGTTCAGTTATTCATTAAGGAAAAATACTAGTTTTTTTTTTTTTAACAAGTAAGAAAGTACTACTTATGAGTAATAAGGAAGTACTGATTCAATCGCGCTCTTTTGAAGTCAGTTTCTTGTTTGATGGCCTGTTGATTGGTATATGATGTTGTCTCTATTTTGCCTTTGCATCATCAGATGATAAAGTAACAGTTTTGGAATCGGAGAAGATAGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTTAATCCTTGGAGGAATCACGATGCTGCTGAAGAGGCCAGGAAAGACACCTAATGCTTCAACTGTTGACCGGAGTAGCTGCTTTGCAAGGTTTGTTCATCATTCCATCCTTATAATCAGCCTAACTGAGGTTCGAATCATTTTTTGGTTTTTTTTTTCCCACCCAAAATGGATGTCTGACATACTGTTTAAAAATTTAAAAACTGAGGTTGAGATCGGCATTTTGAAAATTCAACTGCTTGACAAAAGCTATAGAAATCAAACGGAATGCACTGAAACCAACAAAACCTTATTGAAAGTATACTGATTAGATTTCTGCTTTATACCTTATAAAACCAAACATTGCTGAAACAACGTTAGAAATCACAACTCTCCACAATAGTATGATATTGTCCACTTTGAGCATATGCTCTCATGGCTTTGTTTTTGGTTTCCCCAAAAGGCCTCATACCAATGGAGATGTATTCCTTACTTATAAACCTATGATCAACCCCTTAATGAGCCGATATGGGACTCCTCTCCCAACAATCCCCAACAATCCTCCTCTCGAATAAAGTACACCATAAAGCCTCCATTGAAGCCTATTGGAGCCTTCAAACAACCTCCCTTAATCTAGGCTCGACTTCTTCTCTGGAGCCCTCGAACAAAGTACACCATTTGTTTGAAACTTGAGTCACTTTTGACTACACCTTCGAGACTCACAATTTCTTTGTTACGATATTTAAGGATTCTATTGACATGGCGGTTCAATTAGTTTTTTTAGGTTTTTTTTTTCTTTCTATTCTAAGGGCCCCTATGCCTTGACTCGATATTCGAGTGAGCTTGTTTGATTGCCTGGTTTCTTATACAGAAAAACCACGAACTTTTTAAAACAAACAAACAATGCCAATGTTGTAGCAGGAAAATCAAAATGTACGAATCAAGATTCAAAGTGGGATCAACAATGTTGGAGTTTGATTTGGAACTTTCCCCCCCTTTTTTATAGGAAACTTAGAAATATATATCACTTCAAGGAAGAAGATGAGAGAACAACTTAGGATCCAGGAGTAAATGTGTGAAAAGTTAGTGCAAACTTAAATTAATTTTCATTAGTCATTTTTTACTTATTAGAAATGAATGTTAGCTGCACTTATGGCTTGTAATTAGGAAAGATGTTAGTTGCACTTATGGTCCATAGGTCGGTCTAGTGATCATTGGAGGAAGTAATGGAAGCACGATGATTATAAAAAAATGAGATCAAATCCCATAAACCTACCTAAGATATCACAAACAGGTGAGTTTTTTGATTACCAAATTTTGCTAGGTCAGGTAGTCAATATACATAGTCTAGTTCAAACGCGCACAAATTTTTTATAATCTCTTATAAAATGCTAAGTAACTGTTGCATTTGAAACAACTCTGACCCATCAAAACTTCTTAATGGAACCAACTTTGTGAAGGAAACAACTGTTAAATTCGCGTCCCATGAGATTAGTCAAGATGCACGTAACTAGGTTTAAGAAAGACATTTGAAAACAAAAACTACTCATTAAAGCTCTGGTTGAACAAAATTTCTTCCTAACTCTCAATTTGGCCTTCCAAACCACGTTGATTTCTTTCTAAGTCTAACCATAAGCCCCAAACGAAGACTCTGACCTTGTTGATCCATAAGACTTTAACCTGCATCCACATAGAAGACTATCCCATGAACAACCAAATCACTGTAACACTGCCGCCAAAATTTTTCTAATGAATGAACAATGAAAGAACAAATTGTGGCTTTAGGATATTCGAACTTCAAACGAATATACCTACAATGATCCTACCATTGTTTTTAAGACATGAACCGACACTCTGTTCATTTACATCGGTATACAAGAACTCTCTTCTTACAAAAATCCTCATTGCCACAGTATTTAGCGGTTTCTTCTTGTCGGTTTTGCAGGTTGAGAACGAAATTACAGGGGAGCAGGAGATACGAGCTCAGGCTTTTAAGTTTCACCTAATAAGATGGGGTATTTTAGAAAGCTGCTTCTTTATGACATTGGAGGTCTTCTTATGATTGATTCCATATTAAAGTCGAATGACATCACCAAACCAAAGGTCTGATAATTCAATTCAATTAACAATCTCTTATGGTAGAAATGACAGATTTTCATATAGTCTGATACCCATATTAGAGTTGAATCATAATCCCATATTCAGGACTGTCATTCTAATTCAACTTAACTCATCATGCCTTCTGGAATATAGTCCTTAGGTTGTTATACGTCGTGACTCGAAACCTACCAGATGATTTGACTATGCTATGCAGTACACACCATTGTTGAAAATATTTCTTAGGTGAAAGAAAAAGAATGTCTAACAATCAGCCTG

mRNA sequence

AATAACAAATTTTCTCTCTGAAGCCGCTGGACGTCGCCGCTGTTAGCTCCGTAGCTTGAGCTCTTTTAAATGAAGTTTCTAGGTTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGCTTCCATGGAAATGTTCATGATTAAAACGGGCTTCTGTATTGAAGAAATCTTGCTTTTCAATGAATGTCCACTAACGTTAGATTTTTCGTGTTCGAGACCACGAAATGATAAAGTAACAGTTTTGGAATCGGAGAAGATAGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTTAATCCTTGGAGGAATCACGATGCTGCTGAAGAGGCCAGGAAAGACACCTAATGCTTCAACTGTTGACCGGAGTAGCTGCTTTGCAAGGTTGAGAACGAAATTACAGGGGAGCAGGAGATACGAGCTCAGGCTTTTAAGTTTCACCTAATAAGATGGGGTATTTTAGAAAGCTGCTTCTTTATGACATTGGAGGTCTTCTTATGATTGATTCCATATTAAAGTCGAATGACATCACCAAACCAAAGGTCTGATAATTCAATTCAATTAACAATCTCTTATGGTAGAAATGACAGATTTTCATATAGTCTGATACCCATATTAGAGTTGAATCATAATCCCATATTCAGGACTGTCATTCTAATTCAACTTAACTCATCATGCCTTCTGGAATATAGTCCTTAGGTTGTTATACGTCGTGACTCGAAACCTACCAGATGATTTGACTATGCTATGCAGTACACACCATTGTTGAAAATATTTCTTAGGTGAAAGAAAAAGAATGTCTAACAATCAGCCTG

Coding sequence (CDS)

ATGAAGTTTCTAGGTTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGCTTCCATGGAAATGTTCATGATTAAAACGGGCTTCTGTATTGAAGAAATCTTGCTTTTCAATGAATGTCCACTAACGTTAGATTTTTCGTGTTCGAGACCACGAAATGATAAAGTAACAGTTTTGGAATCGGAGAAGATAGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTTAATCCTTGGAGGAATCACGATGCTGCTGAAGAGGCCAGGAAAGACACCTAA

Protein sequence

MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVLESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT

Homology

[Close]

BLAST of CmoCh17G002880 vs. ExPASy TrEMBL
Match: A0A6J1H837 (uncharacterized protein LOC111460420 OS=Cucurbita moschata OX=3662 GN=LOC111460420 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 72/96 (75.00%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFLGWYVKIGTVSALIGASMEMFMIKTGF                        DKVTVL
Sbjct: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGF-----------------------YDKVTVL 60

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 97
          ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT
Sbjct: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 73

[Close]

BLAST of CmoCh17G002880 vs. ExPASy TrEMBL
Match: A0A6J1KWK7 (uncharacterized protein LOC111498883 OS=Cucurbita maxima OX=3661 GN=LOC111498883 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 72/96 (75.00%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFLGWYVKIGTVSALIGASMEMFMIKTGF                        DKVTVL
Sbjct: 11 MKFLGWYVKIGTVSALIGASMEMFMIKTGF-----------------------YDKVTVL 70

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 97
          ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT
Sbjct: 71 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 83

[Close]

BLAST of CmoCh17G002880 vs. ExPASy TrEMBL
Match: A0A5A7SQJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001150 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.8e-23
Identity = 64/95 (67.37%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 1   MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
           MKFLGWYVKIGTVSALIGASME+FMIKTGF                        DKVTV+
Sbjct: 90  MKFLGWYVKIGTVSALIGASMELFMIKTGF-----------------------YDKVTVI 149

Query: 61  ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKD 96
           ESE++AWENSPEAQAIREALNPWRN DAA EAR+D
Sbjct: 150 ESERLAWENSPEAQAIREALNPWRNGDAAAEARQD 161

[Close]

BLAST of CmoCh17G002880 vs. ExPASy TrEMBL
Match: A0A5A7QYM4 (UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Striga asiatica OX=4170 GN=STAS_27425 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.3e-23
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEE----ILLFN--ECPLTLDFSCSRPRN 60
          MKFL WY+KI  VSALIG SME+FMIKTGFC  E      LF   +C ++  F C+   +
Sbjct: 1  MKFLDWYLKIAAVSALIGGSMELFMIKTGFCFAENHAIASLFGRIQCCVSCLFMCTFSED 60

Query: 61 DKVTVLESEKIAWENSPEAQAIREALNPWRNHDAAE 91
          DKVTVLESEK AWENSPEAQA+R+ALNPWR+HD  E
Sbjct: 61 DKVTVLESEKRAWENSPEAQAMRDALNPWRDHDNQE 96

[Close]

BLAST of CmoCh17G002880 vs. ExPASy TrEMBL
Match: A0A6J1CA87 (uncharacterized protein LOC111009736 OS=Momordica charantia OX=3673 GN=LOC111009736 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.1e-23
Identity = 63/95 (66.32%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 1   MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
           MKFL WYVKIG VSALIGASMEMFMIKTGF                        DKVTVL
Sbjct: 81  MKFLDWYVKIGAVSALIGASMEMFMIKTGF-----------------------YDKVTVL 140

Query: 61  ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKD 96
           ESEK+AWENSPEAQA+REALNPWRN DA  EA+KD
Sbjct: 141 ESEKLAWENSPEAQAVREALNPWRNRDAVAEAKKD 152

[Close]

BLAST of CmoCh17G002880 vs. TAIR 10
Match: AT3G62450.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 7.4e-17
Identity = 47/87 (54.02%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 2  KFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVLE 61
          +FL WY+KI   SA+IG  ME FMIKTGF                        DKVTV+E
Sbjct: 5  RFLDWYLKIAIGSAIIGGGMEFFMIKTGF-----------------------YDKVTVIE 64

Query: 62 SEKIAWENSPEAQAIREALNPWRNHDA 89
          +E+ A ENSPEAQAIREALNPWRN DA
Sbjct: 65 AERRALENSPEAQAIREALNPWRNKDA 68

The following BLAST results are available for this feature:

BLAST of CmoCh17G002880 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh17G002880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H837	1.2e-27	75.00	uncharacterized protein LOC111460420 OS=Cucurbita moschata OX=3662 GN=LOC1114604...	[more]
A0A6J1KWK7	1.2e-27	75.00	uncharacterized protein LOC111498883 OS=Cucurbita maxima OX=3661 GN=LOC111498883...	[more]
A0A5A7SQJ1	1.8e-23	67.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7QYM4	5.3e-23	63.54	UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Striga asiatica OX=4170 GN=ST...	[more]
A0A6J1CA87	9.1e-23	66.32	uncharacterized protein LOC111009736 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]

BLAST of CmoCh17G002880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62450.1	7.4e-17	54.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36377	DNA MISMATCH REPAIR PROTEIN	coord: 1..91
None	No IPR available	PANTHER	PTHR36377:SF1	DNA MISMATCH REPAIR PROTEIN	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G002880.1	CmoCh17G002880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane