CmoCh17G002760 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G002760
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cytochrome c oxidase assembly factor 4-like protein
Location	Cmo_Chr17: 1652571 .. 1652982 (-)
RNA-Seq Expression	CmoCh17G002760
Synteny	CmoCh17G002760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCTATAATACAGGAAAATTCCATTTTAATTATTCCCTTAACTTGAGCAGTTCGAACTGCCTGTAAAATTAGCGTCGTACCTGAACGTAGAAAAATGGGGAATCCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACGGGAGCGACGCCGACGCCGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCCTCTTTCTACTTATCGTTACAGGTTCTTCGTGGCCATTGCGATCGTCATCTTCTTCTTTTTTACGTTCTGCTAAAACCCTAAGCCCTGAACTGCTAATTGATGTTTATTGTCTTGATCACCATAATTTTCAGGAATGTCTTATCAAAACTAACAGGAACTGGAAAGATTGCCAGGCTGGTACGCCGCCATCTCTCATTTCTTCTGGTTCTAAGTTCTAG

mRNA sequence

AACCTATAATACAGGAAAATTCCATTTTAATTATTCCCTTAACTTGAGCAGTTCGAACTGCCTGTAAAATTAGCGTCGTACCTGAACGTAGAAAAATGGGGAATCCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACGGGAGCGACGCCGACGCCGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCCTCTTTCTACTTATCGTTACAGGAATGTCTTATCAAAACTAACAGGAACTGGAAAGATTGCCAGGCTGGTACGCCGCCATCTCTCATTTCTTCTGGTTCTAAGTTCTAG

Coding sequence (CDS)

ATGGGGAATCCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACGGGAGCGACGCCGACGCCGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCCTCTTTCTACTTATCGTTACAGGAATGTCTTATCAAAACTAACAGGAACTGGAAAGATTGCCAGGCTGGTACGCCGCCATCTCTCATTTCTTCTGGTTCTAAGTTCTAG

Protein sequence

MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAGTPPSLISSGSKF

Homology

[Close]

BLAST of CmoCh17G002760 vs. ExPASy TrEMBL
Match: A0A6J1L1R2 (uncharacterized protein LOC111499062 OS=Cucurbita maxima OX=3661 GN=LOC111499062 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQA 56
          MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQA
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQA 55

[Close]

BLAST of CmoCh17G002760 vs. ExPASy TrEMBL
Match: A0A6J1H3G8 (uncharacterized protein LOC111460064 OS=Cucurbita moschata OX=3662 GN=LOC111460064 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQA 56
          MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQA
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQA 55

[Close]

BLAST of CmoCh17G002760 vs. ExPASy TrEMBL
Match: A0A0A0KEH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQA 56
          MG PPISPENQPPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQA
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQA 55

[Close]

BLAST of CmoCh17G002760 vs. ExPASy TrEMBL
Match: A0A1S3C8M5 (cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497907 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.1e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQA 56
          MG PPISPEN+PPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQA
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQA 55

[Close]

BLAST of CmoCh17G002760 vs. ExPASy TrEMBL
Match: A0A5A7SQI1 (Cytochrome c oxidase assembly factor 4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001040 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.1e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQA 56
          MG PPISPEN+PPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQA
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQA 55

[Close]

BLAST of CmoCh17G002760 vs. TAIR 10
Match: AT5G18920.1 (Cox19-like CHCH family protein )

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 12 PPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQ 55
          PP H  DAD DDENVKQL ECSS YLSLQ+CL+ +NR+WK CQ
Sbjct: 19 PPNHQMDADDDDENVKQLKECSSLYLSLQDCLVDSNRDWKSCQ 61

The following BLAST results are available for this feature:

BLAST of CmoCh17G002760 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh17G002760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L1R2	2.6e-24	100.00	uncharacterized protein LOC111499062 OS=Cucurbita maxima OX=3661 GN=LOC111499062...	[more]
A0A6J1H3G8	2.6e-24	100.00	uncharacterized protein LOC111460064 OS=Cucurbita moschata OX=3662 GN=LOC1114600...	[more]
A0A0A0KEH3	1.8e-20	89.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1	[more]
A0A1S3C8M5	5.1e-20	87.27	cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX...	[more]
A0A5A7SQI1	5.1e-20	87.27	Cytochrome c oxidase assembly factor 4-like protein OS=Cucumis melo var. makuwa ...	[more]

BLAST of CmoCh17G002760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18920.1	1.6e-13	72.09	Cox19-like CHCH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR48236	COX19-LIKE CHCH FAMILY PROTEIN	coord: 3..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G002760.1	CmoCh17G002760.1	mRNA