CmoCh17G002570 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G002570
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTVP38/TMEM64 family membrane protein slr0305-like
LocationCmo_Chr17: 1521744 .. 1524604 (-)
RNA-Seq ExpressionCmoCh17G002570
SyntenyCmoCh17G002570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCAGGTGGAGGAAGAGTATTTAATAATTAAAATAATATTTGATATTGAACAGTGACATTGAGCTTGACTCAACTAAAGTTAAAAAAGAGGGGAGCGTACCCCAAGCCTTTTCTGACATTGATTTGCATGCAGCGCTTCTGGCGTACTGCATCACCAGAGTTGCTAAGGCTGCTTTGGAAAAAGCTTTGGCCGAGAATGGAGATGCTGTTGATTATTTGGGTCTCTCCCCGCGTCTACCCGTCGCAGCTGAATCACCTGTTGATCTTAACCTGCCCCTCATAATCAAGATTGACTCTCCTCAAGATGATCGTATATGAAAAGAGTTCTTTTGACATGTAAATTCTTCATTCTCCTCCTTCAATAGGCCCGGCTTCTCTGAACGATGGAAAAGTGTCATTTTTTATTTATGTACAATTCATATTCCATAACGTAGGATCTAGTTTCTTGATATAGAGTGGCCGATTTCTAAATTAAGCATGTGCTAAAGAGTAGCTGCTTGGTTTTTTACTATTACAATAAAAGTGACAGTCCTACTGACTAAAAGCATTCGTTTAGTGAGTTATCTTTGTGATCTAAAGTGATTCTGGTACTGGACCTGGTTTTTTAATCAGTTCATCATAGGCACATATATATTCAGTTCAATATGTGGCGGTGGGATTTCGAACTTGAGACCTCCTTAAAGTTATTGAAGGTGTATGCCTAAGCCTGGATAGGCATATTGTGGTTGAAAAACCAGTAATCTTTCCGCTTCAAATTGTATAGTAATTTTCCTGTCCTTGATTAGACAGAAAAGAACTTCAACTAAACCAAACCTGAGGCGATAGCTTTTACTTCCCTACTCTCAGACGTCTTTTTGCCTTTCCTTTCTCATCAGTCTTTTTATATAAGCATTGAGGACGTAAAAGGTTCATGCTGCCATATTCCACTTCGGATTTGCTTGCCTGCAATCAGTATTAACTGGGTTGCCATTGCAGCAGTGCTGCTCGTGTTTTTGATCATCGGCTAGCAAAGCGCCTCATCATAGGTGAGCTTATCCTAAGGCATGGTTCAGTTAACTTTTTTGTATGCTAGGATAAAAGGTAATTATTAAGCCATCAAACTTGATGATGGATTGAAATAATTATTGTTCGTTTACTTGAATTCTTGATTTTTAGGACAACTACCTTTGAATGAATCACTAATTGATTGGGAATGATTATTATTAGTTCACTTGAATTCTTACTTTTTTGGATAGTATCCTTTGAATGTGTCACTAATTGAATAGAATGAATGATTATTATTATTTCTTCACTTGAATTCTTAATTTTTAGGATAATATCCTTTGAATGAATCACTAAGGTGTGGAAAAAGGATTCAAATTTCAAATGATAGTAGATTGAAACTTAACGTTTTTGTTCTGAAGTTTATGTATAGGTGTGAAATCTACATATTCACTAAGAATATTCAATGGCTTGTATTGCAGGCAACTAACTGGTAAGCAGATGAATTTAGAAGAAGTATCTACATATTCTTACTTTGTATTCATTAAGCATTTATTTTATTCCTTTACTTTTTATTTGCACCCATTAATACTTTTGACCTCTCTTTGAGAAAATCTTGCCATTGCGCTGCTGAAATCATGAGCTTGGTTGGGGAGACTGCTTTTGTTCTAAAGTGAAATATGTTCAGGTAAATTTCTTAAAAGTTACTTCAATTATCTTTTAGTGGCTGAAGTTGCTTTTTCTTCTGTGATTACATGTCTGTGACTTGTGATTTCAAGTGCTAACAAAACAAAATTAGAATAAGAACTGTAACTCCATGATTGAATTGAATGAATTATTAGATTGCTTCTTACAACTTGTGACCTTTTTGATAAAATTTAGGCATTGAAGCAGTAAATGGAAAAACTCCTGTCTGTCAGAGACTTGTAATCCCAAATATATTGTCTCATTGTTGTTTGTGGTGAAGAAGGAATTGACATGAAGATGCTTCCAATATTTGTTGATAATCATAGAATATGATTCTTCAGATCGGTCTGTAGAATTCATTAGCTGCCATGGTAGGTGGATAGAACACTGCATATGAGGACCACCAAGAAATTAAGTTTTTTCTCCTTACAGTCTAAGTTTCATAGTTTTTCTGTACCTTCATTAACTATTTACCTCCTTTGTTTGCCATGTTAATCAGCTACACAAACAAAGATCAGAAACCATGTGATTTGGGCATGCTTGAGCTGGATGCTTGTAGGTGAGAGATTTTAACCTTTTTAGTTCAATAATTGGCTAGAAGAGAATTGAACCATCGACCTTTAGGATGATAATTTGAGTCTTATCCACTCCACCCTGATTGACAATTTTAATCCTCACTATTTATTTTCTTCTTCTATCCGTCTCTTTCATGATTGAAAACAGCATGTGGTGCTTCTCGGCACCCTCTGCACTTATGGAAATGCCATATAGCATTGTTGCAGAAGCTCCTTTCTCTTTTTGTTACTCAAACAAAAGAGCACGATTATTCGGTTCCCGAACCTAGGCCAGGCAAACACCCTCGGCCCCAGTCGTATAAAATAGGTTCATCAAGTGCAATTATTTTTCATTATTAGCTCAGGAAACTTTTAAGTTGCAAATATTAGACTAGACAATGAAGGGTATAGATCAGCTGCTAACTTGTTTGGATGTATGGATCGGATGGATGAAGGAACACAGTTTTTTGGGTTAAATCTGGTTGAAAAGTTGGTTTTATAACGAGGCACTGTTAGTGATTAAAATAACGTTAGTCTTTTAGCTTAAATTAAGGGAAGAAAGAAAGTCTTTTTGTTTAGGTGTTTTGTCTCCATTGAATTGGCTTTTCTTTATAGGTAAAGCGACCCTATATTAA

mRNA sequence

ATGCTTCAGGTGGAGGAAGATGACATTGAGCTTGACTCAACTAAAGTTAAAAAAGAGGGGAGCGTACCCCAAGCCTTTTCTGACATTGATTTGCATGCAGCGCTTCTGGCGTACTGCATCACCAGAGTTGCTAAGGCTGCTTTGGAAAAAGCTTTGGCCGAGAATGGAGATGCTGTTGATTATTTGGGTCTCTCCCCGCGTCTACCCGTCGCAGCTGAATCACCTGTTGATCTTAACCTGCCCCTCATAATCAAGATTGACTCTCCTCAAGATGATCGTAAAGCGACCCTATATTAA

Coding sequence (CDS)

ATGCTTCAGGTGGAGGAAGATGACATTGAGCTTGACTCAACTAAAGTTAAAAAAGAGGGGAGCGTACCCCAAGCCTTTTCTGACATTGATTTGCATGCAGCGCTTCTGGCGTACTGCATCACCAGAGTTGCTAAGGCTGCTTTGGAAAAAGCTTTGGCCGAGAATGGAGATGCTGTTGATTATTTGGGTCTCTCCCCGCGTCTACCCGTCGCAGCTGAATCACCTGTTGATCTTAACCTGCCCCTCATAATCAAGATTGACTCTCCTCAAGATGATCGTAAAGCGACCCTATATTAA

Protein sequence

MLQVEEDDIELDSTKVKKEGSVPQAFSDIDLHAALLAYCITRVAKAALEKALAENGDAVDYLGLSPRLPVAAESPVDLNLPLIIKIDSPQDDRKATLY
Homology
[Close]
BLAST of CmoCh17G002570 vs. ExPASy TrEMBL
Match: A0A5A7SW85 (TVP38/TMEM64 family membrane protein slr0305-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00770 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0 

Query: 17  KKEGSVPQAFSDIDLHAALLAYCITRVAKAALEKALAENGDAVDYLGLSPRLPVAAESPV 76
           +KEG+VP+ FSDIDLHA +LAYC+TRVAKAALEKALAENGD VDYLGLS +LP+  ESPV
Sbjct: 250 RKEGTVPEGFSDIDLHAVVLAYCVTRVAKAALEKALAENGDGVDYLGLSSQLPIVDESPV 309

Query: 77  DLNLPLIIKIDSPQ-DDRK 95
           DLN PLIIKIDSPQ DDRK
Sbjct: 310 DLNQPLIIKIDSPQVDDRK 328

[Close]
BLAST of CmoCh17G002570 vs. ExPASy TrEMBL
Match: A0A6J1H6Q0 (uncharacterized protein LOC111460118 OS=Cucurbita moschata OX=3662 GN=LOC111460118 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 33  AALLAYCITRVAKAALEKALAENGDAVDYLGLSPRLPVAAESPVDLNLPLIIKIDSPQDD 92
           +ALLAYCITRVAKAALEKALAENGDAVDYLGLSPRLPVAAESPVDLNLPLIIKIDSPQDD
Sbjct: 213 SALLAYCITRVAKAALEKALAENGDAVDYLGLSPRLPVAAESPVDLNLPLIIKIDSPQDD 272

Query: 93  R 94
           R
Sbjct: 273 R 273

[Close]
BLAST of CmoCh17G002570 vs. ExPASy TrEMBL
Match: A0A6J1KX66 (uncharacterized protein LOC111499017 OS=Cucurbita maxima OX=3661 GN=LOC111499017 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.5e-23
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 33  AALLAYCITRVAKAALEKALAENGDAVDYLGLSPRLPVAAESPVDLNLPLIIKIDSPQDD 92
           +A+LAYCITRVAKAALEKALAENGDAVDYLGLSPRLPVAAESPVDLNLPLIIKIDSPQDD
Sbjct: 213 SAVLAYCITRVAKAALEKALAENGDAVDYLGLSPRLPVAAESPVDLNLPLIIKIDSPQDD 272

Query: 93  R 94
           R
Sbjct: 273 R 273

[Close]
BLAST of CmoCh17G002570 vs. ExPASy TrEMBL
Match: A0A0A0KC10 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G237630 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.3e-18
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 33  AALLAYCITRVAKAALEKALAENGDAVDYLGLSPRLPVAAESPVDLNLPLIIKIDSPQDD 92
           + +LAYC+TRVAKAALEKALAENGD VDYLGLS +LP+  ESPVDLN PLIIKIDSPQDD
Sbjct: 213 SVVLAYCVTRVAKAALEKALAENGDGVDYLGLSSQLPIVDESPVDLNQPLIIKIDSPQDD 272

[Close]
BLAST of CmoCh17G002570 vs. ExPASy TrEMBL
Match: A0A1S3C8Q0 (TVP38/TMEM64 family membrane protein slr0305-like OS=Cucumis melo OX=3656 GN=LOC103497924 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.9e-18
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 33  AALLAYCITRVAKAALEKALAENGDAVDYLGLSPRLPVAAESPVDLNLPLIIKIDSPQ-D 92
           + +LAYC+TRVAKAALEKALAENGD VDYLGLS +LP+  ESPVDLN PLIIKIDSPQ D
Sbjct: 213 SVVLAYCVTRVAKAALEKALAENGDGVDYLGLSSQLPIVDESPVDLNQPLIIKIDSPQVD 272

Query: 93  DRK 95
           DRK
Sbjct: 273 DRK 275

[Close]
BLAST of CmoCh17G002570 vs. TAIR 10
Match: AT5G19070.1 (SNARE associated Golgi protein family )

HSP 1 Score: 51.2 bits (121), Expect = 5.4e-07
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 33  AALLAYCITRVAKAALEKALAEN-GDAVDYLGLSPRLPVAAESPVDLNLPLIIKIDS--P 92
           + +L  C+T+VAK AL KALAE+ GD  + +   P L V  ++  DLN PL+IKID+  P
Sbjct: 213 SVILMVCVTKVAKDALRKALAEHGGDMNEAVAALPELTVTDDASTDLNEPLLIKIDAQQP 272

[Close]
BLAST of CmoCh17G002570 vs. TAIR 10
Match: AT1G03260.1 (SNARE associated Golgi protein family )

HSP 1 Score: 48.5 bits (114), Expect = 3.5e-06
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 33  AALLAYCITRVAKAALEKALAENGDAVDYLGLSPR--LPVAAESPVDLNLPLIIKID 88
           A +L  CITRVAK++L+KALAENG  +D         LP+ AE P DL  PL+I+ID
Sbjct: 215 AVILIICITRVAKSSLDKALAENGTELDGKKNDDASVLPI-AEPPPDLQEPLVIRID 270

The following BLAST results are available for this feature:
BLAST of CmoCh17G002570 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G002570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SW851.8e-2681.01TVP38/TMEM64 family membrane protein slr0305-like OS=Cucumis melo var. makuwa OX... [more]
A0A6J1H6Q02.5e-2398.36uncharacterized protein LOC111460118 OS=Cucurbita moschata OX=3662 GN=LOC1114601... [more]
A0A6J1KX665.5e-2396.72uncharacterized protein LOC111499017 OS=Cucurbita maxima OX=3661 GN=LOC111499017... [more]
A0A0A0KC105.3e-1881.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G237630 PE=4 SV=1[more]
A0A1S3C8Q06.9e-1880.95TVP38/TMEM64 family membrane protein slr0305-like OS=Cucumis melo OX=3656 GN=LOC... [more]
BLAST of CmoCh17G002570 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G19070.15.4e-0748.39SNARE associated Golgi protein family [more]
AT1G03260.13.5e-0652.63SNARE associated Golgi protein family [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G002570.1CmoCh17G002570.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane