CmoCh17G001910 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G001910
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like
LocationCmo_Chr17: 1133937 .. 1135760 (+)
RNA-Seq ExpressionCmoCh17G001910
SyntenyCmoCh17G001910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTTCAGTGTTCTTCGACAATCTTCTTTCTGTAAAATGTCTTCAATTGGAACATCCAAGGGAATTCTGGAGATCGCCAAGTTCGGGATTTATGTTACTGTACCGATCTTTTTAATGTACACCTTCGCCAACAATAGCAAAAATCTCCAGAAATTCATTGGCAAAGTAAGTGTCTATTTCCCTTTCTTCCTTCCCTAAAATTATGTTTGTGGATCTGCACATAGTTACATATGGACTGGTTCTTGACAAATACTTTCCCTTGTTTCGGGGTGGAGGTGTCCTGTAATTGCTGATTGCTGTTAAGATTATCTGTTAGGGATTTATCGAGCTGTTAGGGATTTGCTATGGGAAATTCACTGGTTTTTCAAGGTATCGGAACTCGTTGATGGTTAATTCACCATCTTCTGTGAATGAAAAAATAAAATATAACAGAGAGTAACTTATGGGGAAAAAAAGTTTTCAATGATGCTCATACTGAGAGAGGGGAGTTTGGATAAATGAAGAACGTGTTTATATTTGGTTAAATTACCAGTTTAATCTCTCAATTAGTAGCACAAAATTTAACCTCTAACAATTCATTAAACATAAAATTTAAATCTATTTCTGTAGATCAATTAATTTTTAGAGCCTCACACACTATTGAAAGTTAAGGCTCCTTTTAGACATAAGATTGAAACTTTGAAGACCTATTAGACACTTTCGAAAGTTAATAGACCAAATAAGCACAAATTTCAAAGTTTAGGGGCCTAACTCGTAATTGAACCTTTATATTTTCTTAATTGATTTAGCTCTAGCTTTGTTCATTTTATGCTTGTATCCTCCATGGGTTGATGAATCTATGAGCGTTCCAGGCAGTATTGAACCACAGAAGTTACTTAAAATGCATTTTGTTAGCCAAATCAAGCCTTTCATATGAATTGGGCAGTTCATATGTCTGCATCTTCAGCTTCATTAGAAGTAAAAACTATCGATACAATATTATTGTTCTTATCTTCACAAGCATTAGTTCTTATGTTCTACTATATAATATCAAGGGTTTAATTGAATTACTTCCTCTTCTGATAGTCTTATATAGTGTATCCTCCTGAGGGACCGAGGCCTCCGTCACCAGAAGAAGTAAGAGAGATGGCACGGGAATTGGCTCGAAAGAACAACATGCGCTGATGATATGTGGTCAGTGAGTAATGCAGCATTTAAGTCATATTTTCAGGGTTGTCGAGTTGATTGTTTCACATGTATTTATCTGTTCATAGAGTAATTGATGACTATCAATATTTAGGAGCAACTATGAATCAGCCTTTGGTTAGTTCAGGTGGGATAAAGATGATAAGGGCCAAACTCAACTTGCTGAGAGATAAACAGCCTATCTGTACTATGGTCGTGCTACTGTTCTAACTGTGGTAATATGTCTGTGTAATAATGGGGGAAAAAGTCTTATTTAGATCAATGTGTGGGATTGATACACAGTGATGCTGTTTTTCTTAATAAAGTAGAACTTTGGAGAATAATCTGAGAGATTTACCTAAGACCAATATGTTTCTATTTCCTTCTCTAAAACTCCCTCCCATGTCTTCTCCCTCCAACTCCCTTCCCTGTATTTCACCTCTGACGACGACAATGCTCTCTTCCATGCCTTCTTCCTCGCAACGGTGACAACGAGTAGAGTTGTTTCTTCTGCCTTCTAGAGGTCGAACGAGCGAGAAAAGCTATAAATAATCCTGAGAAAGGGTTGGTGACACAGGTTAGAAAGCTTTGTTTTGAAAAACTCTGTCAAATTTCATTTTTAAGTCTGGAATGTGAATGGAGACATGTTATATGTGGAG

mRNA sequence

TTTCTTCAGTGTTCTTCGACAATCTTCTTTCTGTAAAATGTCTTCAATTGGAACATCCAAGGGAATTCTGGAGATCGCCAAGTTCGGGATTTATGTTACTGTACCGATCTTTTTAATGTACACCTTCGCCAACAATAGCAAAAATCTCCAGAAATTCATTGGCAAATCTTATATAGTGTATCCTCCTGAGGGACCGAGGCCTCCGTCACCAGAAGAAGTAAGAGAGATGGCACGGGAATTGGCTCGAAAGAACAACATGCGCTGATGATATGTGGAGCAACTATGAATCAGCCTTTGGTTAGTTCAGGTGGGATAAAGATGATAAGGGCCAAACTCAACTTGCTGAGAGATAAACAGCCTATCTGTACTATGGTCGTGCTACTGTTCTAACTGTGGTAATATGTCTGTGTAATAATGGGGGAAAAAGTCTTATTTAGATCAATGTGTGGGATTGATACACAGTGATGCTGTTTTTCTTAATAAAGTAGAACTTTGGAGAATAATCTGAGAGATTTACCTAAGACCAATATGTTTCTATTTCCTTCTCTAAAACTCCCTCCCATGTCTTCTCCCTCCAACTCCCTTCCCTGTATTTCACCTCTGACGACGACAATGCTCTCTTCCATGCCTTCTTCCTCGCAACGGTGACAACGAGTAGAGTTGTTTCTTCTGCCTTCTAGAGGTCGAACGAGCGAGAAAAGCTATAAATAATCCTGAGAAAGGGTTGGTGACACAGGTTAGAAAGCTTTGTTTTGAAAAACTCTGTCAAATTTCATTTTTAAGTCTGGAATGTGAATGGAGACATGTTATATGTGGAG

Coding sequence (CDS)

ATGTCTTCAATTGGAACATCCAAGGGAATTCTGGAGATCGCCAAGTTCGGGATTTATGTTACTGTACCGATCTTTTTAATGTACACCTTCGCCAACAATAGCAAAAATCTCCAGAAATTCATTGGCAAATCTTATATAGTGTATCCTCCTGAGGGACCGAGGCCTCCGTCACCAGAAGAAGTAAGAGAGATGGCACGGGAATTGGCTCGAAAGAACAACATGCGCTGA

Protein sequence

MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEEVREMARELARKNNMR
Homology
[Close]
BLAST of CmoCh17G001910 vs. ExPASy TrEMBL
Match: A0A6J1H3E4 (uncharacterized protein LOC111460043 OS=Cucurbita moschata OX=3662 GN=LOC111460043 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNMR 76
          VREMARELARKNNMR
Sbjct: 61 VREMARELARKNNMR 75

[Close]
BLAST of CmoCh17G001910 vs. ExPASy TrEMBL
Match: A0A6J1L334 (uncharacterized protein LOC111499403 OS=Cucurbita maxima OX=3661 GN=LOC111499403 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.8e-33
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFGIYVT+PIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNMR 76
          VREMARELARKNN+R
Sbjct: 61 VREMARELARKNNIR 75

[Close]
BLAST of CmoCh17G001910 vs. ExPASy TrEMBL
Match: A0A6J1CAY1 (uncharacterized protein LOC111009565 OS=Momordica charantia OX=3673 GN=LOC111009565 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.4e-32
Identity = 70/75 (93.33%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFG+YV++PIFLMYTFANNSKNLQ+FIGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGLYVSIPIFLMYTFANNSKNLQRFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNMR 76
          VREMARELARKNN+R
Sbjct: 61 VREMARELARKNNIR 75

[Close]
BLAST of CmoCh17G001910 vs. ExPASy TrEMBL
Match: A0A0A0LIL9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G205950 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-31
Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFGIYVT+PI LMYTFANNSKNLQ+F+GKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNMR 76
          VREMARELARKNN+R
Sbjct: 61 VREMARELARKNNIR 75

[Close]
BLAST of CmoCh17G001910 vs. ExPASy TrEMBL
Match: A0A1S3BLQ1 (uncharacterized protein LOC103491216 OS=Cucumis melo OX=3656 GN=LOC103491216 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.4e-31
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFGIYVT+PI LMYTFANNSKNLQ+F+GKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNM 75
          VREMARELARKNN+
Sbjct: 61 VREMARELARKNNI 74

[Close]
BLAST of CmoCh17G001910 vs. TAIR 10
Match: AT4G14615.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52825.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 120.6 bits (301), Expect = 5.6e-28
Identity = 57/76 (75.00%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIG-KSYIVYPPEGPRPPSPE 60
          MSS+GTSKG+LEI KFG+YV VPI LMYTFANNS N++KF+G +SY+VYP E PRPPSP+
Sbjct: 1  MSSVGTSKGVLEIVKFGVYVAVPIVLMYTFANNSTNIKKFMGNRSYVVYPEEAPRPPSPD 60

Query: 61 EVREMARELARKNNMR 76
          E+REMARELARK N+R
Sbjct: 61 ELREMARELARKKNIR 76

[Close]
BLAST of CmoCh17G001910 vs. TAIR 10
Match: AT1G52825.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14615.1); Has 52 Blast hits to 49 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 112.1 bits (279), Expect = 2.0e-25
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGK-SYIVYPPEGPRPPSPE 60
          MSS+GTSKGILEIAKFG+YV VPI L+YTFANNS N++KF+G  SY+VYP E PRPPSPE
Sbjct: 1  MSSVGTSKGILEIAKFGVYVAVPIVLIYTFANNSTNIKKFMGNHSYVVYPKEAPRPPSPE 60

Query: 61 EVREMARELARK 72
          E+REMA++LA K
Sbjct: 61 ELREMAKQLALK 72

The following BLAST results are available for this feature:
BLAST of CmoCh17G001910 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G001910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H3E41.5e-33100.00uncharacterized protein LOC111460043 OS=Cucurbita moschata OX=3662 GN=LOC1114600... [more]
A0A6J1L3345.8e-3397.33uncharacterized protein LOC111499403 OS=Cucurbita maxima OX=3661 GN=LOC111499403... [more]
A0A6J1CAY16.4e-3293.33uncharacterized protein LOC111009565 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A0A0LIL91.9e-3193.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G205950 PE=4 SV=1[more]
A0A1S3BLQ15.4e-3193.24uncharacterized protein LOC103491216 OS=Cucumis melo OX=3656 GN=LOC103491216 PE=... [more]
BLAST of CmoCh17G001910 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G14615.15.6e-2875.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G52825.12.0e-2575.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018625Protein Pet100PFAMPF09803Pet100coord: 11..72
e-value: 2.2E-9
score: 37.7
NoneNo IPR availablePANTHERPTHR35700:SF2PROTEIN, PUTATIVE-RELATEDcoord: 1..73
NoneNo IPR availablePANTHERPTHR35700OS07G0181800 PROTEINcoord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G001910.1CmoCh17G001910.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0033617 mitochondrial cytochrome c oxidase assembly
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion