CmoCh17G001510 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G001510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	peroxisomal membrane protein PMP22
Location	Cmo_Chr17: 861747 .. 864723 (-)
RNA-Seq Expression	CmoCh17G001510
Synteny	CmoCh17G001510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAATGATCGAGTGAGTACCTTCGATGGTAGGGTTCAGAGACGCGTCCAATCTCGGTCTACCGGCGTCGCAAACCAACCCCCTGCGATCAAAGTCAAACATTCGTTAATTCCAATACTTAAATTCCTCCAAAACCCCTATTCTATTCCCGATCATCACAACAATCTTCGCTTATTGTTCCCATTTTCATCCCAAGATCTTGGAGATCCCCAACTCAAGAACTATGTCTTCCATAGTTACCGATGCCTGGAAAGGCTATCTCCTTCAACTTCAGAAGAATCCTCTCAGAACAAAGGTCTGTTGTTTCATTCAGAATCTGATTCGGCTTCTTCGGGTTGTTCTATCTATGTTCTACCTTTCTTTTTAGGCGATCACTGCTGGGGTTTTAGCTGGTTGCAGCGATACGGTGGCTCAGAAGATTTCTGGGATCAAAAAGCTTCAAATCAGACGATTACTTCTTGTGATGGTACAGTTCCTTTATTAATTCTGTGATTCTCTGTGGATAATGGCTGGTGAGGTGCTAAAAATGTGTTGTATTACTGCTCTGTAGCTCTATGGCTTTGCTTATGCTGGACCGTTTGGGCATTTTTTGCACAAGTTAATGGATAAAATTTTCAAGGGGAAGAAAGGAAACACAACTGTTGCAAAGAAGGTAGTATCTGTTTCTTCCTTAAATGTTTCTAAACCTGAATCCTTTCCTTGTAATCTTAGCCGTTTTCTGTGGTTATATTGATTGCTGAAGGTGATATTGGAACAATTGACCAGCTCTCCTTGGAACAATTTGTTTTTCATGATATACTATGGTTTGGTTGTTGAAGGTAAGCAAATCTGCTGCAATTTTTTATATCACGATATTGTTCATTTTGAACATAAGCTCTCGTGGCTTTGCTTTTGGTTTCCCCAAAAGTTCTCGTACCAATAGAGATTTGTTCCTTATACACCCATGATCATTGCTTCCTTAATTAGCCAATGTGGTATTCCCTCCCAACAATCCTCGAGAAATGGGTTACTGACGGGATTTTGTGTAGTTTTTCATGTTTTGTCCAGAAGTATTCAACCCTCCATAGTGTTGGTTGTCATAATCTGGTTCTAATCTCTATGGATGTCCTATGTTCATAAAGGTCATGTTGGCTAAAAGGTTGACAAACTTAGAGCCTCTAATTTCAGGAAGACCATGGAGTTTGGTGAAGGCTAAAGTTCGAAAGGATTATCCAACTATTCAGCTTACTGCTTGGCGGGTATGGAATTCAAACCTATTGTTCTTTTTATTTGATTTGGGTTTGTGTCGCTGTTAGAAATGAAGAAAGCTTAGTATAATAGATAATAAGAATGAGATGCTTATGAATTGCAGTTCTGGCCTATAGTTGGTTGGGTGAATTACCAGTACATGCCTCTGCAGTTTCGAGTCATATTTCACAGCTTTGTTGCTTCATGCTGGTGAGACCCCTTCATTATTTTTCAACTATTCCTGCAAGCAAAAAAAAAACAAATATATATTGTGAGATCCCACGTCGGTTGAAGAGGGAGAACGAAGCATTCCTTATAAGGGTGTAGAAACCTCTCTCTAGCACACACGATTTTAGACTGACGATGATACGTAATGTGCTAAAGCAAACAATATCTGTTAGCGGTAGGCTTGGTTATAAATGGTATCAGAATCAGACACCGGTCGGTGTGCCAACGAGGACGTTGGGCCCTCAAAGAGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGAGAACGAAACATTTCTTATAAGAGTGTAGAAACCTCTCCCTAGTATATACGTTTTAAAAGCCGTGAGGCTGAGAGCAATACGTAACGGGCCAAAGCAGACAATATCTGCTAGCGGTAGGCTTGGTTATAAATGGTATCAGAGCCAGATACCAGGCCGTGTGCCAATGAAGACATTGGACCCCCAAGGAGGGTGGATTTTGAGATCCCACATCGGTTGGAGAGGGGAACGAAACATTTCTTATAAGGATGTAGAAACCTCTACCTAGTATATGCGTTTTAAAAATCGTGAGGCTGACGGCGATATGTAACGGGCCAAAGCGGACAATATCTATTAGCGGTGGGCTTGGGCTATTAACCATTACAAATCTATATAAGTTACAGCAAAAAGAGTCAAAAGAAATGAAAGAAACAATATTGTTTACACGTTAATCTGAGCATTAGAATTTGATGTTTGTACCATCTGGCTTGATAATGTTACTTATATTAGGCCATTTCACCATAAACTGGAAGATCAAGAAACTGCAGACATTACAAGAAACACCTCTAAATTTTGTTATTGTTTCATAAATGCTTCAAAATAGAGTATCGATTACGGTTCATGATCACGGTCACACCATTCCATATCTCAATTTCATCCAACATTCAAGTAGTTTTGAAACGATTGTGAATGTCACGACTCATGGGTGATGTTGCAACTTTTGAAAAAATATGAATACTTTTTAACGAAAGACAAAGGTCGTGGGGTATGCTTTGTAACTTAGCCTACAAGAATAAAAAGCTATATATATATATATATATATTATATATATTATCTGGAAAAGAATATTGTGATGTGATCTTGTACATATTCTCCCCGTAACACAATTGTGGTTTCTGGTTTCAGGGGAATCTTTCTGAATCTGAAAGCAAGATCAGTTGCGGTGAAGGCAGCATAAGCTGAATCATCATTTCTCTAATTTAAGCCTTAAAGTCGCTTTCTTTACTTTGGTATCTGTAGAACACATTAGCTTTTGATATGAGCTGTGATTGCTCGTCTTCTGTTTTGACTCGCACCACGAATAATACAAGGGTAGTTAAGGAATAAACTAAGGAAGCTCGTCTCTTTTTTGTTTTTTTTTTTCCTTTGCCCTTATTGGTTAGCATTAAAGTAAGAGGGTAAGAGAAAAATTACTTTTGTAACTCTCGTAGATTTGCTCCTAGTTTTTCCAAAAGGTCCCATAGAATATTCCTTACTT

mRNA sequence

ATGCGAAATGATCGAGTGAGTACCTTCGATGGTAGGGTTCAGAGACGCGTCCAATCTCGGTCTACCGGCGTCGCAAACCAACCCCCTGCGATCAAAATCTTGGAGATCCCCAACTCAAGAACTATGTCTTCCATAGTTACCGATGCCTGGAAAGGCTATCTCCTTCAACTTCAGAAGAATCCTCTCAGAACAAAGGCGATCACTGCTGGGGTTTTAGCTGGTTGCAGCGATACGGTGGCTCAGAAGATTTCTGGGATCAAAAAGCTTCAAATCAGACGATTACTTCTTGTGATGCTCTATGGCTTTGCTTATGCTGGACCGTTTGGGCATTTTTTGCACAAGTTAATGGATAAAATTTTCAAGGGGAAGAAAGGAAACACAACTGTTGCAAAGAAGGTGATATTGGAACAATTGACCAGCTCTCCTTGGAACAATTTGTTTTTCATGATATACTATGGTTTGGTTGTTGAAGGAAGACCATGGAGTTTGGTGAAGGCTAAAGTTCGAAAGGATTATCCAACTATTCAGCTTACTGCTTGGCGGTTCTGGCCTATAGTTGGTTGGGTGAATTACCAGTACATGCCTCTGCAGTTTCGAGTCATATTTCACAGCTTTGTTGCTTCATGCTGGGGAATCTTTCTGAATCTGAAAGCAAGATCAGTTGCGGTGAAGGCAGCATAAGCTGAATCATCATTTCTCTAATTTAAGCCTTAAAGTCGCTTTCTTTACTTTGGTATCTGTAGAACACATTAGCTTTTGATATGAGCTGTGATTGCTCGTCTTCTGTTTTGACTCGCACCACGAATAATACAAGGGTAGTTAAGGAATAAACTAAGGAAGCTCGTCTCTTTTTTGTTTTTTTTTTTCCTTTGCCCTTATTGGTTAGCATTAAAGTAAGAGGGTAAGAGAAAAATTACTTTTGTAACTCTCGTAGATTTGCTCCTAGTTTTTCCAAAAGGTCCCATAGAATATTCCTTACTT

Coding sequence (CDS)

ATGCGAAATGATCGAGTGAGTACCTTCGATGGTAGGGTTCAGAGACGCGTCCAATCTCGGTCTACCGGCGTCGCAAACCAACCCCCTGCGATCAAAATCTTGGAGATCCCCAACTCAAGAACTATGTCTTCCATAGTTACCGATGCCTGGAAAGGCTATCTCCTTCAACTTCAGAAGAATCCTCTCAGAACAAAGGCGATCACTGCTGGGGTTTTAGCTGGTTGCAGCGATACGGTGGCTCAGAAGATTTCTGGGATCAAAAAGCTTCAAATCAGACGATTACTTCTTGTGATGCTCTATGGCTTTGCTTATGCTGGACCGTTTGGGCATTTTTTGCACAAGTTAATGGATAAAATTTTCAAGGGGAAGAAAGGAAACACAACTGTTGCAAAGAAGGTGATATTGGAACAATTGACCAGCTCTCCTTGGAACAATTTGTTTTTCATGATATACTATGGTTTGGTTGTTGAAGGAAGACCATGGAGTTTGGTGAAGGCTAAAGTTCGAAAGGATTATCCAACTATTCAGCTTACTGCTTGGCGGTTCTGGCCTATAGTTGGTTGGGTGAATTACCAGTACATGCCTCTGCAGTTTCGAGTCATATTTCACAGCTTTGTTGCTTCATGCTGGGGAATCTTTCTGAATCTGAAAGCAAGATCAGTTGCGGTGAAGGCAGCATAA

Protein sequence

MRNDRVSTFDGRVQRRVQSRSTGVANQPPAIKILEIPNSRTMSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLLVMLYGFAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPWSLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSVAVKAA

Homology

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BLAST of CmoCh17G001510 vs. ExPASy Swiss-Prot
Match: Q9ZS51 (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana OX=3702 GN=PMP22 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.7e-62
Identity = 110/174 (63.22%), Postives = 141/174 (81.03%), Query Frame = 0


Query: 53  YLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLLVMLYGFAYAGPFGHFL 112
           YL QLQ++PLRTKAITAGVL+G SD V+QK+SGI+K+Q+RR+LL +++   + GP GHF 
Sbjct: 14  YLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGHFF 73

Query: 113 HKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPWSLVKAKVRKDY 172
           H  +DK FKGKK   TVAKKVILEQLT SP N+L FMIYYG+V+E  PW+LV+ +++K Y
Sbjct: 74  HTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTY 133

Query: 173 PTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSVAVKAA 227
           PT+QLTAW F+P+VGW+NY+Y+PL FRVI HS VA  WGIFL L+ARS+ +  A
Sbjct: 134 PTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTLALA 187

[Close]

BLAST of CmoCh17G001510 vs. ExPASy Swiss-Prot
Match: Q54GD8 (PXMP2/4 family protein 3 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290223 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.7e-21
Identity = 57/184 (30.98%), Postives = 107/184 (58.15%), Query Frame = 0


Query: 38  NSRTMSSIVTDA---WKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRL 97
           NS+ +S  +TDA   W  Y+ +L+  P++TKA+T+  L+  S  VAQK    KK+    +
Sbjct: 3   NSKPLS--LTDAVTTW--YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAV 62

Query: 98  LLVMLYGFAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGL 157
           +   ++G   + P  H+ H ++D++FK  K       K+I++QL  +P+ N+ F      
Sbjct: 63  VKFTVWGL-ISSPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA- 122

Query: 158 VVEGRPWSLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFL 217
           +++G+P S++       +PT++  +W+ WP+   +N++++P   RV+F + V  CWGI+L
Sbjct: 123 ILDGKPKSILFKLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYL 179

Query: 218 NLKA 219
           ++ A
Sbjct: 183 SILA 179

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BLAST of CmoCh17G001510 vs. ExPASy Swiss-Prot
Match: Q54FR4 (PXMP2/4 family protein 4 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.8e-17
Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 0


Query: 53  YLLQLQKNPLRTKAITAGVLAGCSDTVAQKI----SGIKKLQIRRLLLVMLYGFAYAGPF 112
           YL QL K P+ TKA+T+G L   SD++ Q I       KK   +R + + ++GFA  GP 
Sbjct: 15  YLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPL 74

Query: 113 GHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPWSLVKAKV 172
            H+  K +DK F  KK       K+ ++Q+  SP  N  F    G ++EG+    +  K+
Sbjct: 75  FHYWFKYLDKHFP-KKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGKSKDDIVEKL 134

Query: 173 RKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFL 215
           +KD+ T  ++    WP + +VN+ Y+    RV F +     WG FL
Sbjct: 135 KKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178

[Close]

BLAST of CmoCh17G001510 vs. ExPASy Swiss-Prot
Match: P42925 (Peroxisomal membrane protein 2 OS=Mus musculus OX=10090 GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-16
Identity = 59/192 (30.73%), Postives = 103/192 (53.65%), Query Frame = 0


Query: 29  PAIKILEIPNSRTMSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKK 88
           PA   L + +   + S+   A   YLL L+  P+ TKA+++G+L+   + +AQ I   ++
Sbjct: 3   PAASRLRVESE--LGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQR 62

Query: 89  -----LQIRRLLLVMLYGFAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPW 148
                L++  LL  ++YG    GP  H+L+  M+     +    +V K+++L++L  +P 
Sbjct: 63  KDSRLLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASV-KRLLLDRLFFAPT 122

Query: 149 NNLFFMIYYGLVVEGRPWSLVKAKVRKDY-PTIQLTAWRFWPIVGWVNYQYMPLQFRVIF 208
             L F     L +EG+  S+  AK+R  + P +Q+  WR W  + ++N  Y+PLQFRV+F
Sbjct: 123 FLLLFFFVMNL-LEGKNVSVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLF 182

Query: 209 HSFVASCWGIFL 215
            +  A  W  +L
Sbjct: 183 ANMAALFWYAYL 189

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BLAST of CmoCh17G001510 vs. ExPASy Swiss-Prot
Match: Q07066 (Peroxisomal membrane protein 2 OS=Rattus norvegicus OX=10116 GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 3.8e-16
Identity = 60/192 (31.25%), Postives = 102/192 (53.12%), Query Frame = 0


Query: 29  PAIKILEIPNSRTMSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKK 88
           PA   L + +   + S+   A   YLL L+  P+ TKA+++G+L+   + +AQ I   +K
Sbjct: 3   PAASRLRVESE--LRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQK 62

Query: 89  -----LQIRRLLLVMLYGFAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPW 148
                L++  LL  ++YG    GP  H+L+  M+     +     V K+++L++L  +P 
Sbjct: 63  KDSRSLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARV-KRLLLDRLFFAPT 122

Query: 149 NNLFFMIYYGLVVEGRPWSLVKAKVRKDY-PTIQLTAWRFWPIVGWVNYQYMPLQFRVIF 208
             L F     L +EG+  S+  AK+R  + P +Q+  WR W  + ++N  Y+PLQFRV+F
Sbjct: 123 FLLLFFFVMNL-LEGKNISVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLF 182

Query: 209 HSFVASCWGIFL 215
            +  A  W  +L
Sbjct: 183 ANMAALFWYAYL 189

[Close]

BLAST of CmoCh17G001510 vs. ExPASy TrEMBL
Match: A0A6J1H5B2 (peroxisomal membrane protein PMP22 OS=Cucurbita moschata OX=3662 GN=LOC111460189 PE=3 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.6e-102
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 42  MSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLLVMLYG 101
           MSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLLVMLYG
Sbjct: 1   MSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLLVMLYG 60

Query: 102 FAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPW 161
           FAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPW
Sbjct: 61  FAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPW 120

Query: 162 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV 221
           SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV
Sbjct: 121 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV 180

Query: 222 AVKAA 227
           AVKAA
Sbjct: 181 AVKAA 185

[Close]

BLAST of CmoCh17G001510 vs. ExPASy TrEMBL
Match: A0A6J1L1V0 (peroxisomal membrane protein PMP22 OS=Cucurbita maxima OX=3661 GN=LOC111499089 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 8.0e-102
Identity = 184/185 (99.46%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 42  MSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLLVMLYG 101
           MSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLL+MLYG
Sbjct: 1   MSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLLLMLYG 60

Query: 102 FAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPW 161
           FAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPW
Sbjct: 61  FAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPW 120

Query: 162 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV 221
           SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV
Sbjct: 121 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV 180

Query: 222 AVKAA 227
           AVKAA
Sbjct: 181 AVKAA 185

[Close]

BLAST of CmoCh17G001510 vs. ExPASy TrEMBL
Match: A0A0A0LNM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G173050 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.5e-95
Identity = 169/180 (93.89%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 42  MSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLLVMLYG 101
           MSSIVT+AW+GYLLQLQKNPLRTKAITAGVLAG SD+VAQKISGIKKLQ RRLLL+MLYG
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 102 FAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPW 161
           FAYAGPFGHFLHKLMD+IFKGKKGNTTVAKKV+LEQ+TSSPWNNLFFM+YYGLVVEGRPW
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNNLFFMMYYGLVVEGRPW 120

Query: 162 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV 221
           SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMP+QFRVIFHSFVASCWGIFLNLKARSV
Sbjct: 121 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPIQFRVIFHSFVASCWGIFLNLKARSV 180

[Close]

BLAST of CmoCh17G001510 vs. ExPASy TrEMBL
Match: A0A5D3BQ13 (Peroxisomal membrane protein PMP22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00350 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 170/180 (94.44%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 42  MSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLLVMLYG 101
           MSSIVT+AW+GYLLQLQKNPLRTKAITAGVLAG SD+VAQKISGIKKLQ RRLLL+MLYG
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 102 FAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPW 161
           FAYAGPFGHFLHKLMD+IFKGKKGNTTVAKKV+LEQLTSSPWNNLFFM+YYGLVVEGR W
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQLTSSPWNNLFFMMYYGLVVEGRRW 120

Query: 162 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV 221
           SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV
Sbjct: 121 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV 180

[Close]

BLAST of CmoCh17G001510 vs. ExPASy TrEMBL
Match: A0A1S3CDE7 (peroxisomal membrane protein PMP22 OS=Cucumis melo OX=3656 GN=LOC103499432 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 170/180 (94.44%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 42  MSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLLVMLYG 101
           MSSIVT+AW+GYLLQLQKNPLRTKAITAGVLAG SD+VAQKISGIKKLQ RRLLL+MLYG
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 102 FAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPW 161
           FAYAGPFGHFLHKLMD+IFKGKKGNTTVAKKV+LEQLTSSPWNNLFFM+YYGLVVEGR W
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQLTSSPWNNLFFMMYYGLVVEGRRW 120

Query: 162 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV 221
           SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV
Sbjct: 121 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV 180

[Close]

BLAST of CmoCh17G001510 vs. TAIR 10
Match: AT4G14305.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 320.9 bits (821), Expect = 8.5e-88
Identity = 148/185 (80.00%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 42  MSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLLVMLYG 101
           MS +  DAW+ YL+QLQ +PLRTKAITAGVLAGCSD +AQKISG+K++Q RRLLL+MLYG
Sbjct: 1   MSDLAKDAWRKYLIQLQAHPLRTKAITAGVLAGCSDAIAQKISGVKRIQFRRLLLLMLYG 60

Query: 102 FAYAGPFGHFLHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPW 161
           FAY GPFGHF HKLMD IFKGKKGN+TVAKKV+LEQLTSSPWNN  FM YYGLVVEGRPW
Sbjct: 61  FAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPW 120

Query: 162 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSV 221
            LVK K+ KDYPTIQLTAW+FWPIVGWVNYQY+PLQFRV+F SFVASCW IFLNLKARS 
Sbjct: 121 KLVKHKLGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLKARSP 180

Query: 222 AVKAA 227
            +K A
Sbjct: 181 VIKNA 185

[Close]

BLAST of CmoCh17G001510 vs. TAIR 10
Match: AT4G14305.2 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 280.8 bits (717), Expect = 9.7e-76
Identity = 129/157 (82.17%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 70  GVLAGCSDTVAQKISGIKKLQIRRLLLVMLYGFAYAGPFGHFLHKLMDKIFKGKKGNTTV 129
           GVLAGCSD +AQKISG+K++Q RRLLL+MLYGFAY GPFGHF HKLMD IFKGKKGN+TV
Sbjct: 17  GVLAGCSDAIAQKISGVKRIQFRRLLLLMLYGFAYGGPFGHFFHKLMDTIFKGKKGNSTV 76

Query: 130 AKKVILEQLTSSPWNNLFFMIYYGLVVEGRPWSLVKAKVRKDYPTIQLTAWRFWPIVGWV 189
           AKKV+LEQLTSSPWNN  FM YYGLVVEGRPW LVK K+ KDYPTIQLTAW+FWPIVGWV
Sbjct: 77  AKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPWKLVKHKLGKDYPTIQLTAWKFWPIVGWV 136

Query: 190 NYQYMPLQFRVIFHSFVASCWGIFLNLKARSVAVKAA 227
           NYQY+PLQFRV+F SFVASCW IFLNLKARS  +K A
Sbjct: 137 NYQYVPLQFRVLFSSFVASCWSIFLNLKARSPVIKNA 173

[Close]

BLAST of CmoCh17G001510 vs. TAIR 10
Match: AT4G04470.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 240.0 bits (611), Expect = 1.9e-63
Identity = 110/174 (63.22%), Postives = 141/174 (81.03%), Query Frame = 0


Query: 53  YLLQLQKNPLRTKAITAGVLAGCSDTVAQKISGIKKLQIRRLLLVMLYGFAYAGPFGHFL 112
           YL QLQ++PLRTKAITAGVL+G SD V+QK+SGI+K+Q+RR+LL +++   + GP GHF 
Sbjct: 14  YLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGHFF 73

Query: 113 HKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVVEGRPWSLVKAKVRKDY 172
           H  +DK FKGKK   TVAKKVILEQLT SP N+L FMIYYG+V+E  PW+LV+ +++K Y
Sbjct: 74  HTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTY 133

Query: 173 PTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSVAVKAA 227
           PT+QLTAW F+P+VGW+NY+Y+PL FRVI HS VA  WGIFL L+ARS+ +  A
Sbjct: 134 PTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTLALA 187

[Close]

BLAST of CmoCh17G001510 vs. TAIR 10
Match: AT3G24570.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-13
Identity = 49/189 (25.93%), Postives = 87/189 (46.03%), Query Frame = 0


Query: 50  WKGYLLQLQKNPLRTKAITAGVLAGCSDTVAQKI----------------------SGIK 109
           W+ Y   L  +P++T+ I++G L G  D  AQ I                      + IK
Sbjct: 5   WRWYQRCLTVHPVKTQVISSGFLWGFGDVTAQYITHSTAKRRLLRLTETNKDADADAEIK 64

Query: 110 ---------KLQIRRLLLVMLYGFAYAGPFGHFLHKLMDKIFKGK-----KGNTTVAKKV 169
                    K+  +R+ +  ++GF + GP GHF ++ +DK  K K     K    VA KV
Sbjct: 65  VKWKQDAEFKVNWKRVAITSMFGFGFVGPVGHFWYEGLDKFIKLKLRYVPKSTRFVAAKV 124

Query: 170 ILEQLTSSPWNNLFFMIYYGLVVEGRPWSLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQY 203
            ++ L   P + L F  Y G    G+  + VK  +++D+          WP++   N++Y
Sbjct: 125 AMDGLIFGPVDLLVFFTYMGFAT-GKNTAEVKEGLKRDFLPALALEGGAWPLLQIANFRY 184

[Close]

BLAST of CmoCh17G001510 vs. TAIR 10
Match: AT5G19750.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-12
Identity = 46/174 (26.44%), Postives = 85/174 (48.85%), Query Frame = 0


Query: 53  YLLQLQKNPLRTKAITAGVLAGCSDTVAQ-KISGIKKLQIRRLLLVMLYGFAYAGPFGHF 112
           Y   L  +P+ TKA+TA +L    D + Q  I+    L  +R L     G    GP  HF
Sbjct: 118 YQALLSNSPVLTKAVTAALLNLVGDLICQLTINKTSSLDKKRTLTFTFLGLGLVGPTLHF 177

Query: 113 LHKLMDKIFKGKKGNTTVAKKVILEQLTSSPWNNLFFMIYYGLVV--EGRPWSLVKAKVR 172
            +  + K+     G +    +++L+Q   +P   +F  ++   VV  EG+P S V  K++
Sbjct: 178 WYLYLSKVVTA-SGLSGAVIRLLLDQFVFAP---IFVGVFLSAVVTLEGKP-SNVIPKLQ 237

Query: 173 KDYPTIQLTAWRFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARSVAV 224
           +++    +  W+ W    ++N++++P  ++V+  + VA  W + L+ KA    V
Sbjct: 238 QEWTGAMIANWQLWIPFQFLNFRFVPQNYQVLASNVVALAWNVILSFKAHKEVV 286

The following BLAST results are available for this feature:

BLAST of CmoCh17G001510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZS51	2.7e-62	63.22	Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana OX=3702 GN=PMP22 PE=1...	[more]
Q54GD8	8.7e-21	30.98	PXMP2/4 family protein 3 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290223 PE...	[more]
Q54FR4	5.8e-17	33.73	PXMP2/4 family protein 4 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290631 PE...	[more]
P42925	1.3e-16	30.73	Peroxisomal membrane protein 2 OS=Mus musculus OX=10090 GN=Pxmp2 PE=1 SV=2	[more]
Q07066	3.8e-16	31.25	Peroxisomal membrane protein 2 OS=Rattus norvegicus OX=10116 GN=Pxmp2 PE=1 SV=2	[more]

BLAST of CmoCh17G001510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H5B2	3.6e-102	100.00	peroxisomal membrane protein PMP22 OS=Cucurbita moschata OX=3662 GN=LOC111460189...	[more]
A0A6J1L1V0	8.0e-102	99.46	peroxisomal membrane protein PMP22 OS=Cucurbita maxima OX=3661 GN=LOC111499089 P...	[more]
A0A0A0LNM9	5.5e-95	93.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G173050 PE=3 SV=1	[more]
A0A5D3BQ13	1.6e-94	94.44	Peroxisomal membrane protein PMP22 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3CDE7	1.6e-94	94.44	peroxisomal membrane protein PMP22 OS=Cucumis melo OX=3656 GN=LOC103499432 PE=3 ...	[more]

BLAST of CmoCh17G001510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14305.1	8.5e-88	80.00	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT4G14305.2	9.7e-76	82.17	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT4G04470.1	1.9e-63	63.22	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT3G24570.1	5.2e-13	25.93	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT5G19750.1	1.2e-12	26.44	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007248	Mpv17/PMP22	PFAM	PF04117	Mpv17_PMP22	coord: 155..215 e-value: 1.3E-17 score: 63.7
IPR007248	Mpv17/PMP22	PANTHER	PTHR11266	PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17	coord: 42..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR11266:SF46	OS08G0566900 PROTEIN	coord: 42..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G001510.1	CmoCh17G001510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane