CmoCh17G001070 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G001070
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr17: 575869 .. 579272 (-)
RNA-Seq ExpressionCmoCh17G001070
SyntenyCmoCh17G001070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGATTCTCCCTCTTTCCTGCTGCCAATCGCTGTTGAAGATTCACGGGGTGGCAGATTTGTGTTCTACTTCCACTTTCTGGTTTTTATTTTGCAGTTGTGAGTAAATTTTCTGATCTGGGACACTCTTAATTCGCTTGCATTTTGATTCTCAGCATGTTCTTTGATATGAACTCGTATGATTATCCTATTTCTCTAATGAACTTTGCAATTGAAATCTGTTTGTTTTCTGAAAGTTGACGGGAAAATCGGATTCGAACTTCAATGTGGAGGACCAAATTCTGTCATCATGAATGTCGCACTCCACATGTTTGATGAAATGCCCGTCAGGCAATTGTTTTAGTTAAGAAGGATCAACCGTTGAGGATTGTTGGGAGAGAGTCCCATGTTGGCTAATTTAGGGAATGATCACGAGTTTATAAGTAAGGAATACGTCTCCATTGGTACGAGGTCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCTAGTGGAGGTTTGTTGTTTCTAACATTGTATTAGAGTCGTGCCCTTAAGTTAGTTATGTCAATAGAATCCTCAAGTGTCGAACAAAGAAGTTGTGAGTCTCAAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAAAGGGTGTACTTAGTTTGAGGATTCTAGAGAAGGAGTCGAGCCTTGATTAAGGGAAGGTTGTTCGAGGGCTTTATAGGCCTCATGGGAGGCTTTATAGTGTACTTTATTCGAGAGGAGGAATTGTTGAGATTTGTTGGGAGAGATCTCCATTGGTATGAGGCCTTTTGGAGAAGCCCAAAACAAAGTCATGAGACTTTATACTCAAAGTGTCATACCATTGTAGAGAGTCGTAATTTCTAACATGAGTATTCTTTGCTTTTTTACTGCACTTTTAACGATTCGATTGGTCAATGATATTGGTCTAAGACTCTGGAAATGTAAGGAGAATACAAGTGATTACTATGTTCTTACTCAGAATGAAACATCCGGAAGCCATACTTCTCTGTTATAAGTTACAATATTAGCAAATGAAATACTCATCTCTTTGGTTTTTCACTGTATTCCCAGAGCTTGGATCCTCCTAACCAGTGACAAAGAAGTTGCATTTCTTTGCTTCCAACCTTCTAGGCTCTCCATTTTTTCTTCTTTAGGGAAGCATTGATCATTGCCATCGAGTATTTTAACTATCTGCCTCATTTTTGGTCTTAAATCTGGGTTTGAGTGAGTACATGCCACACCTAATCTCAACATTCTCGTCAGTTCTTTGTGGTTGTATTCTCCATTCAGCCTTATATCAGCAAGTTCTTCCAGTGATCTTTTCCGGGTGTGGAATTCATGGACCTTCCTCACCAGCAATACCTCTGGCCGTCGAAAATCGACGGCCATCTGACCAGTAATCACCTCTAGAACGACTACACCAAAGCTGTATACATCAGCTGTCGCTGCTGCATCTCCCGAGTCTAAATACTCGGGGGACATGTACCCGAAAATCCCGCGAACCGATTTGCTTTTATCTATGGTTACATGATGATTACCGTGCTCATTTCTTGTCAGGAATTCTGCAAGGGCGAAAGAACTCAGCTTTGGGTTAAGATCAATATCAAGAATGACAGCTGATGAGGTGATGTTCTTGTGGATGACTTGTTCATCCCATTCCTCATGAAGATAAAGAATTGCTGAAGCCAGAGATTTGATAATGTTGTATCTATGACACCATTGTAAAGATCTATTGTCATGCTGGAAAAGCAGGTGGCTCAAGAGACGGTCTGCTGAATAATCATATACCACAAGCATCTCCCCTTGCTCTGTGCACCATCCACGAAGCTGTATCAAGTTTCTATGGCGAAGACGGCCCAAGTTTTCGAGTTCATTCGAGAATCGTTCCCGTAATGCAGGGCATGTCTTCATTCCAAGGCGCTTCACTAGAACATGGTGGCTGCTGTCAAGGAAGCCATGGTAGGCAGTTCCGAAGTCCAGCTCCGCCACCCGCTGCGAGTCGGAGAAGTTATTGGTGGCTGAAATGATCTCCTTGAATGATATTACTCTTGGATTGTCAATCATTTGAAAAGTTTTTGTTCTGTCAAGAAGCTTATCAGAAGAGTTGGTGTAGTTGTTCCCACTCTCAGCTGTCATATATATGGTTTCTCCATTGGCTGATACGAAATCTGATGAACTAACTGTTATTGTTGTTGCTGTGGTTCTGCTACTGCTAGTGCTTCTGGTAGTGCTGCCATTGGTGGTGGAAGATAGAGAAATGTACTGAGGATGAGACTGAAATGATGGAAGCGCCGGCAAATTCATACCACCGGAAAGGGCTTCCACAACCCACTTCATATTTGGTCTATACAGAGGGCTTTGGAGTGTACAGAGGAGACCCAAATGGATCAAACGCTCCATTTCAATCAGATTATAAGACCCATCTGGCAGCCGGTTATCGCCGCCGAGCAGCGGCATTCCATCGTCGGAGAGCTTTCGAAACCAATCAAGCAACACAATCTGATCATCAGGACATGTAAGGTCCACTGCTCGCCGACCAGAGACCATCTCAAGAAGAACAATACCAAAGCTGAAAACATCGGATTTTGCAGTGGCAATGCTTCTTCTTTGAAAACTCTCCGGTGGGAGATACCCAATTGTGCCGCCAATTTTGGTGGTTTCCACCAGCCGGAACTGGTGGTGGCTCATCGACGGCACGCTGTTTTGGTACTCAAGATCATGCTCCAACCACCTTGCCAAACCAAAATCACCAAGCTTAGCGTTGTAATTGGAATCAAGCATGACGTTGCTGGTTTTAACATCTCTGTGAATAATCTGTGTCTCTAATTGTTCATGAAGATAGAACAGAGCAGCAGCCAAGCCTCTCACAATCTTCACTCTCTGTTTCCAACTAAGATCCGTCCCGCCGTTCTCCGGCCGCCGGAAAAGTACTCTGTCCAAGCTTCGGTTGGGCATATAATCATAAACAATGAACAATTGGTCTTCATGAACACACCAACCACGGAGCCGGACAAGATTCCGGTGTCGGAGATGGGCAACCGCCACCAGCTCCGCCACAAACGTCTTCTCAAACTTCTCCCCTTTTTCAGCCAAACATTTCACAGCCGCCATAGTTCCATCACTAGGCAAATATGCTCTGTAAACCTTCCCAAATCCACCACTACCAAGAATTTCCTCTGCACTGAATCCTTTGGTTCCAATATAGAGCTCTGCAAAGCTGAAGATTCTTGGGTTGTCGCCGCCGAGTTTCTCAGAAAGGTGTACCCCATCGGTGTCGTGAAACTCGGACGGTGGTGGGTTTCTGGGTCTGCCGCCGTAGCAACAAGAATTAACCCATTTCAGGTTATGGATTTTGTGAAGGGAATCTCGGAGTAA

mRNA sequence

ATGCCCGATTCTCCCTCTTTCCTGCTGCCAATCGCTGTTGAAGATTCACGGGGTGGCAGATTTGTGTTCTACTTCCACTTTCTGAGGGCTTTGGAGTGTACAGAGGAGACCCAAATGGATCAAACGCTCCATTTCAATCAGATTATAAGACCCATCTGGCAGCCGGTTATCGCCGCCGAGCAGCGGCATTCCATCGTCGGAGAGCTTTCGAAACCAATCAAGCAACACAATCTGATCATCAGGACATGTAAGGTCCACTGCTCGCCGACCAGAGACCATCTCAAGAAGAACAATACCAAAGCTGAAAACATCGGATTTTGCAGTGGCAATGCTTCTTCTTTGAAAACTCTCCGGTGGGAGATACCCAATTGTGCCGCCAATTTTGGTGGTTTCCACCAGCCGGAACTGGTGGTGGCTCATCGACGGCACGCTGTTTTGGTACTCAAGATCATGCTCCAACCACCTTGCCAAACCAAAATCACCAAGCTTAGCGTTATAGAACAGAGCAGCAGCCAAGCCTCTCACAATCTTCACTCTCTGTTTCCAACTAAGATCCGTCCCGCCGTTCTCCGGCCGCCGGAAAAGTACTCTGTCCAAGCTTCGGTTGGGCATATAATCATAAACAATGAACAATTGGTCTTCATGAACACACCAACCACGGAGCCGGACAAGATTCCGGTGTCGGAGATGGGCAACCGCCACCAGCTCCGCCACAAACGTCTTCTCAAACTTCTCCCCTTTTTCAGCCAAACATTTCACAGCCGCCATAGTTCCATCACTAGGCAAATATGCTCTGTAAACCTTCCCAAATCCACCACTACCAAGAATTTCCTCTGCACTGAATCCTTTGGTTCCAATATAGAGCTCTGCAAAGCTGAAGATTCTTGGGTTGTCGCCGCCGAGTTTCTCAGAAAGGTGTACCCCATCGGTGTCGTGAAACTCGGACGGTGGTGGGTTTCTGGGTCTGCCGCCGTAGCAACAAGAATTAACCCATTTCAGGTTATGGATTTTGTGAAGGGAATCTCGGAGTAA

Coding sequence (CDS)

ATGCCCGATTCTCCCTCTTTCCTGCTGCCAATCGCTGTTGAAGATTCACGGGGTGGCAGATTTGTGTTCTACTTCCACTTTCTGAGGGCTTTGGAGTGTACAGAGGAGACCCAAATGGATCAAACGCTCCATTTCAATCAGATTATAAGACCCATCTGGCAGCCGGTTATCGCCGCCGAGCAGCGGCATTCCATCGTCGGAGAGCTTTCGAAACCAATCAAGCAACACAATCTGATCATCAGGACATGTAAGGTCCACTGCTCGCCGACCAGAGACCATCTCAAGAAGAACAATACCAAAGCTGAAAACATCGGATTTTGCAGTGGCAATGCTTCTTCTTTGAAAACTCTCCGGTGGGAGATACCCAATTGTGCCGCCAATTTTGGTGGTTTCCACCAGCCGGAACTGGTGGTGGCTCATCGACGGCACGCTGTTTTGGTACTCAAGATCATGCTCCAACCACCTTGCCAAACCAAAATCACCAAGCTTAGCGTTATAGAACAGAGCAGCAGCCAAGCCTCTCACAATCTTCACTCTCTGTTTCCAACTAAGATCCGTCCCGCCGTTCTCCGGCCGCCGGAAAAGTACTCTGTCCAAGCTTCGGTTGGGCATATAATCATAAACAATGAACAATTGGTCTTCATGAACACACCAACCACGGAGCCGGACAAGATTCCGGTGTCGGAGATGGGCAACCGCCACCAGCTCCGCCACAAACGTCTTCTCAAACTTCTCCCCTTTTTCAGCCAAACATTTCACAGCCGCCATAGTTCCATCACTAGGCAAATATGCTCTGTAAACCTTCCCAAATCCACCACTACCAAGAATTTCCTCTGCACTGAATCCTTTGGTTCCAATATAGAGCTCTGCAAAGCTGAAGATTCTTGGGTTGTCGCCGCCGAGTTTCTCAGAAAGGTGTACCCCATCGGTGTCGTGAAACTCGGACGGTGGTGGGTTTCTGGGTCTGCCGCCGTAGCAACAAGAATTAACCCATTTCAGGTTATGGATTTTGTGAAGGGAATCTCGGAGTAA

Protein sequence

MPDSPSFLLPIAVEDSRGGRFVFYFHFLRALECTEETQMDQTLHFNQIIRPIWQPVIAAEQRHSIVGELSKPIKQHNLIIRTCKVHCSPTRDHLKKNNTKAENIGFCSGNASSLKTLRWEIPNCAANFGGFHQPELVVAHRRHAVLVLKIMLQPPCQTKITKLSVIEQSSSQASHNLHSLFPTKIRPAVLRPPEKYSVQASVGHIIINNEQLVFMNTPTTEPDKIPVSEMGNRHQLRHKRLLKLLPFFSQTFHSRHSSITRQICSVNLPKSTTTKNFLCTESFGSNIELCKAEDSWVVAAEFLRKVYPIGVVKLGRWWVSGSAAVATRINPFQVMDFVKGISE
Homology
[Close]
BLAST of CmoCh17G001070 vs. ExPASy TrEMBL
Match: A0A0A0LNC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G138750 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.1e-49
Identity = 97/129 (75.19%), Postives = 113/129 (87.60%), Query Frame = 0 

Query: 215 MNTPTTEPDKIPVSEMGNRHQLRHKRLLKLLPFFSQTFHSRHSSITRQICSVNLPKSTTT 274
           MNTPTT+P+KIP+SEM +RHQLRHKRLLKLLPFFSQTFHS HSSITRQICSVNLPKST T
Sbjct: 1   MNTPTTKPNKIPMSEMSHRHQLRHKRLLKLLPFFSQTFHSHHSSITRQICSVNLPKSTAT 60

Query: 275 KNFLCTESFGSNIELCKAEDSWVVAAEFLRKVYPIGVVKLGRWWVSGSAAVATRINPFQV 334
           +NFLCT+SFG  IELCK EDS VV ++FLRK+YP+ VVK+  W  SG+ AVATR+NPFQ 
Sbjct: 61  ENFLCTKSFGPYIELCKTEDSGVVPSDFLRKLYPVSVVKIKGWRFSGATAVATRMNPFQG 120

Query: 335 MDFVKGISE 344
           ++F +GISE
Sbjct: 121 LEFEEGISE 129

[Close]
BLAST of CmoCh17G001070 vs. ExPASy TrEMBL
Match: A0A5B6WF32 (Uncharacterized protein OS=Gossypium australe OX=47621 GN=EPI10_020850 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.0e-15
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 0 

Query: 180 LFPTKIRPAVLRPPEKYSVQASVGHIIINNEQLVFMNTPTTEPDKIPVSEMGNRHQLRHK 239
           +F ++  P +L P ++YSV+AS+ H++I+ EQLVFMN P  +P+KI V+EM +RHQL  K
Sbjct: 100 VFTSRWCPGILGPSKEYSVEASIRHVVIDEEQLVFMNAPAPQPNKISVAEMSHRHQLSCK 159

Query: 240 RLLKLLPFFSQTFHSRHSSIT 261
            L K LPF  QTF   HSS+T
Sbjct: 160 SLFKPLPFLGQTFDGHHSSVT 180

The following BLAST results are available for this feature:
BLAST of CmoCh17G001070 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G001070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNC99.1e-4975.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G138750 PE=4 SV=1[more]
A0A5B6WF325.0e-1551.85Uncharacterized protein OS=Gossypium australe OX=47621 GN=EPI10_020850 PE=4 SV=1[more]
BLAST of CmoCh17G001070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G001070.1CmoCh17G001070.1mRNA