CmoCh17G000150 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G000150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal RNA adenine dimethylase family protein
LocationCmo_Chr17: 73682 .. 74215 (+)
RNA-Seq ExpressionCmoCh17G000150
SyntenyCmoCh17G000150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGCATGGCAGAAGGAGCAGCAGCACCTTCATTGCCCGACCTTGTACTCTCGCTCGAGCAAGCATCGTTCATGGCCAAGCAGCTTTCTTCTACCTCTAACCCAGCCCATCTCCTCCAAATCTACAATTCTCTCCACCAGGCCAACCTCAACCTCTCCGTTTTCCTCTCTACACCTCACTACCCCCAATCTCTTCCTCTTCCTCCCCCTTCCATCAACGATAATCTCCTCTCCTCTGCAACCAGCGCCGCCTTCAACGACAGCGGCAACGAGCCGATGCAGGTCGGCGATGACGAAGATGCCGATGCCGAGCAGAATTCCAAGGGCACGATTGAAATGGTTGAGGAGAAGATGAAGGATTGTTTTATTAAGAACAAGCGGGTTAAACGAAAGCTATCGCCGTCGGCCGCGGCTATGGCGGAGGAAAGGCGAGTACATCGTGATAATCGGTTTAGTGCGACGGCGAAGGGTTTCGATCCTCATGTTGAGAGATTGCGGGCCTTGGACCTGATTTCCCAGTTTCATGCGTGA

mRNA sequence

ATGGAAGGCATGGCAGAAGGAGCAGCAGCACCTTCATTGCCCGACCTTGTACTCTCGCTCGAGCAAGCATCGTTCATGGCCAAGCAGCTTTCTTCTACCTCTAACCCAGCCCATCTCCTCCAAATCTACAATTCTCTCCACCAGGCCAACCTCAACCTCTCCGTTTTCCTCTCTACACCTCACTACCCCCAATCTCTTCCTCTTCCTCCCCCTTCCATCAACGATAATCTCCTCTCCTCTGCAACCAGCGCCGCCTTCAACGACAGCGGCAACGAGCCGATGCAGGTCGGCGATGACGAAGATGCCGATGCCGAGCAGAATTCCAAGGGCACGATTGAAATGGTTGAGGAGAAGATGAAGGATTGTTTTATTAAGAACAAGCGGGTTAAACGAAAGCTATCGCCGTCGGCCGCGGCTATGGCGGAGGAAAGGCGAGTACATCGTGATAATCGGTTTAGTGCGACGGCGAAGGGTTTCGATCCTCATGTTGAGAGATTGCGGGCCTTGGACCTGATTTCCCAGTTTCATGCGTGA

Coding sequence (CDS)

ATGGAAGGCATGGCAGAAGGAGCAGCAGCACCTTCATTGCCCGACCTTGTACTCTCGCTCGAGCAAGCATCGTTCATGGCCAAGCAGCTTTCTTCTACCTCTAACCCAGCCCATCTCCTCCAAATCTACAATTCTCTCCACCAGGCCAACCTCAACCTCTCCGTTTTCCTCTCTACACCTCACTACCCCCAATCTCTTCCTCTTCCTCCCCCTTCCATCAACGATAATCTCCTCTCCTCTGCAACCAGCGCCGCCTTCAACGACAGCGGCAACGAGCCGATGCAGGTCGGCGATGACGAAGATGCCGATGCCGAGCAGAATTCCAAGGGCACGATTGAAATGGTTGAGGAGAAGATGAAGGATTGTTTTATTAAGAACAAGCGGGTTAAACGAAAGCTATCGCCGTCGGCCGCGGCTATGGCGGAGGAAAGGCGAGTACATCGTGATAATCGGTTTAGTGCGACGGCGAAGGGTTTCGATCCTCATGTTGAGAGATTGCGGGCCTTGGACCTGATTTCCCAGTTTCATGCGTGA

Protein sequence

MEGMAEGAAAPSLPDLVLSLEQASFMAKQLSSTSNPAHLLQIYNSLHQANLNLSVFLSTPHYPQSLPLPPPSINDNLLSSATSAAFNDSGNEPMQVGDDEDADAEQNSKGTIEMVEEKMKDCFIKNKRVKRKLSPSAAAMAEERRVHRDNRFSATAKGFDPHVERLRALDLISQFHA
Homology
BLAST of CmoCh17G000150 vs. ExPASy TrEMBL
Match: A0A5D3DLF5 (Putative AP2-like ethylene-responsive transcription factor SNZ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00120 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.3e-70
Identity = 148/177 (83.62%), Postives = 157/177 (88.70%), Query Frame = 0

Query: 1   MEGMAEGAAAPSLPDLVLSLEQASFMAKQLSSTSNPAHLLQIYNSLHQANLNLSVFLSTP 60
           ME MAEG A PSL DL+ SL+QA+FMAKQL STSNP HLLQIYNSLHQANLNLS+FLST 
Sbjct: 1   MEPMAEGTAPPSLSDLLHSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTT 60

Query: 61  HYPQSLPLPPPSINDNLLSSATSAAFNDSGNEPMQVGDDEDADAEQNSKGTIEMVEEKMK 120
           H PQSLPLPPPSIN+  LSSATSAAF     +PMQVGDD+DADA QNSKGTIEMVEEKMK
Sbjct: 61  HLPQSLPLPPPSINETSLSSATSAAF-----DPMQVGDDDDADAHQNSKGTIEMVEEKMK 120

Query: 121 DCFIKNKRVKRKLSPSAAAMAEERRVHRDNRFSATAKGFDPHVERLRALDLISQFHA 178
           DCFIKNKRVKR+LSPSAAAMAEERRVH  NRF+AT KGFDPHVERLRALDLISQFHA
Sbjct: 121 DCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA 172

BLAST of CmoCh17G000150 vs. ExPASy TrEMBL
Match: A0A1S3CC06 (uncharacterized protein LOC103499058 OS=Cucumis melo OX=3656 GN=LOC103499058 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.3e-70
Identity = 148/177 (83.62%), Postives = 157/177 (88.70%), Query Frame = 0

Query: 1   MEGMAEGAAAPSLPDLVLSLEQASFMAKQLSSTSNPAHLLQIYNSLHQANLNLSVFLSTP 60
           ME MAEG A PSL DL+ SL+QA+FMAKQL STSNP HLLQIYNSLHQANLNLS+FLST 
Sbjct: 1   MEPMAEGTAPPSLSDLLHSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTT 60

Query: 61  HYPQSLPLPPPSINDNLLSSATSAAFNDSGNEPMQVGDDEDADAEQNSKGTIEMVEEKMK 120
           H PQSLPLPPPSIN+  LSSATSAAF     +PMQVGDD+DADA QNSKGTIEMVEEKMK
Sbjct: 61  HLPQSLPLPPPSINETSLSSATSAAF-----DPMQVGDDDDADAHQNSKGTIEMVEEKMK 120

Query: 121 DCFIKNKRVKRKLSPSAAAMAEERRVHRDNRFSATAKGFDPHVERLRALDLISQFHA 178
           DCFIKNKRVKR+LSPSAAAMAEERRVH  NRF+AT KGFDPHVERLRALDLISQFHA
Sbjct: 121 DCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA 172

BLAST of CmoCh17G000150 vs. ExPASy TrEMBL
Match: A0A6J1DSG3 (uncharacterized protein LOC111023095 OS=Momordica charantia OX=3673 GN=LOC111023095 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.8e-70
Identity = 148/177 (83.62%), Postives = 159/177 (89.83%), Query Frame = 0

Query: 1   MEGMAEGAAAPSLPDLVLSLEQASFMAKQLSSTSNPAHLLQIYNSLHQANLNLSVFLSTP 60
           ME MAEG A+PSLPDLVLSLEQASFMAKQL STSNP+HLLQIYNSLHQAN NLS+FLS  
Sbjct: 1   MEAMAEG-ASPSLPDLVLSLEQASFMAKQLPSTSNPSHLLQIYNSLHQANHNLSIFLSGT 60

Query: 61  HYPQSLPLPPPSINDNLLSSATSAAFNDSGNEPMQVGDDEDADAEQNSKGTIEMVEEKMK 120
            +PQSLPLP PS+N+N LSSATSAAFND GNEPMQVGDD     EQNSKG+IEMVEEKMK
Sbjct: 61  QFPQSLPLPRPSLNENSLSSATSAAFNDDGNEPMQVGDD-----EQNSKGSIEMVEEKMK 120

Query: 121 DCFIKNKRVKRKLSPSAAAMAEERRVHRDNRFSATAKGFDPHVERLRALDLISQFHA 178
           DCFIKNKRVKR+LSPS AAMAEERR+HRD+RF AT+KGFDP VERLRALDLISQFHA
Sbjct: 121 DCFIKNKRVKRQLSPSTAAMAEERRLHRDDRFGATSKGFDPRVERLRALDLISQFHA 171

BLAST of CmoCh17G000150 vs. ExPASy TrEMBL
Match: A0A0A0KBH1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074570 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.4e-69
Identity = 148/181 (81.77%), Postives = 158/181 (87.29%), Query Frame = 0

Query: 1   MEGMAEGAAAPSLPDLVLSLEQASFMAKQLSSTSNPAHLLQIYNSLHQANLNLSVFLSTP 60
           ME MA+G A PSL DL+LSL+QA+FMAKQL STSNP HLLQIYNSLHQANLNLS+FLST 
Sbjct: 1   MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTT 60

Query: 61  HYPQS----LPLPPPSINDNLLSSATSAAFNDSGNEPMQVGDDEDADAEQNSKGTIEMVE 120
           H PQS    LPLPPPSIN+  LSSATSAAF     +PMQVGDD+DADA QNSKGTIEMVE
Sbjct: 61  HLPQSLPLPLPLPPPSINETSLSSATSAAF-----DPMQVGDDDDADAHQNSKGTIEMVE 120

Query: 121 EKMKDCFIKNKRVKRKLSPSAAAMAEERRVHRDNRFSATAKGFDPHVERLRALDLISQFH 178
           EKMKDCFIKNKRVKR+LSPSAAAMAEERRVH  NRF+AT KGFDPHVERLRALDLISQFH
Sbjct: 121 EKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFH 176

BLAST of CmoCh17G000150 vs. ExPASy TrEMBL
Match: A0A7N2MFF3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.5e-42
Identity = 109/185 (58.92%), Postives = 130/185 (70.27%), Query Frame = 0

Query: 1   MEGMAEGAAAPSLP--DLVLSLEQASFMAKQLSSTSNPAHLLQIYNSLHQANLNLSVFLS 60
           MEGMAE AA P  P  +LVL+LEQA+ MAKQL +T++P HLLQIY SLHQA+ +LS FLS
Sbjct: 1   MEGMAEAAAVPPAPLQELVLTLEQATHMAKQLPATADPTHLLQIYTSLHQAHHHLSNFLS 60

Query: 61  TPHYPQSLPLPPPSI-------NDNLLSSATSAAFNDSGNEPMQVGDDEDADAEQNSKGT 120
             H  Q  P P PS+       ++N +SS T  A  D    PMQ+ DD+  D E NSKG 
Sbjct: 61  KTHQQQFPPPPLPSLLPLPHAASENSVSSTTGGADTD----PMQLADDDGEDTEGNSKGI 120

Query: 121 IEMVEEKMKDCFIKNKRVKRKLSPSAAAMAEERRVHRDNRFSATAKGFDPHVERLRALDL 177
           IE VEEKM+DCFIKNKR KR LSPSAA MAEERR++ D+ F  + KGFDP+  RLRALDL
Sbjct: 121 IEKVEEKMRDCFIKNKRPKRPLSPSAATMAEERRLY-DDGFGRSVKGFDPYATRLRALDL 180

BLAST of CmoCh17G000150 vs. TAIR 10
Match: AT1G01840.1 (unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.1 bits (235), Expect = 5.9e-20
Identity = 74/176 (42.05%), Postives = 100/176 (56.82%), Query Frame = 0

Query: 8   AAAPSLPDLVLSLEQASFMAKQLSSTSNPAHLLQIYNSLHQANLNLSVFLSTPHYPQSLP 67
           A+   + +L+ SLEQA+ MA+Q+ +T     LLQI +SL  A+  LS FL+      S+P
Sbjct: 2   ASIEQVAELISSLEQATLMAQQIGTTVGQNQLLQI-SSLRIAHQRLSAFLA------SIP 61

Query: 68  LPPPSINDNLLSSATSAAFNDSGNEPMQVGDDEDAD---AEQNSKGTIEMVEEKMKDCFI 127
                           A  + S  EPMQ+G++E  +   AE+     IE VEEKM++CFI
Sbjct: 62  -------------TAEAEKSFSSVEPMQLGEEEKGEAEPAEEERYSAIEKVEEKMRECFI 121

Query: 128 KNKRVKRKLSPSAAAM---AEERRVHRDNRFSATAKGFDPHVERLRALDLISQFHA 178
           +NKR+KR LSPS+A +   A E R  RD  F +     DPH  +LRALDLI QFHA
Sbjct: 122 RNKRLKRPLSPSSAVVETSATEERSGRDYGFDS-----DPHATKLRALDLIYQFHA 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DLF51.3e-7083.62Putative AP2-like ethylene-responsive transcription factor SNZ OS=Cucumis melo v... [more]
A0A1S3CC061.3e-7083.62uncharacterized protein LOC103499058 OS=Cucumis melo OX=3656 GN=LOC103499058 PE=... [more]
A0A6J1DSG32.8e-7083.62uncharacterized protein LOC111023095 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A0A0KBH11.4e-6981.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074570 PE=4 SV=1[more]
A0A7N2MFF32.5e-4258.92Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G01840.15.9e-2042.05unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..106
NoneNo IPR availablePANTHERPTHR37697AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SNZcoord: 6..177

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G000150.1CmoCh17G000150.1mRNA