CmoCh16G013270 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G013270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;
Location	Cmo_Chr16: 9402996 .. 9403971 (+)
RNA-Seq Expression	CmoCh16G013270
Synteny	CmoCh16G013270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGTTTGGGCTGGGCCTTGGATTTGGAGACCTTCTACTGAAGTCCATTTATTCATGTTCGAAGCCCAATGATAGGCCCAACTTCTTCCTGAATAACCTCCGTCGTATTCCAACGACCAACGGAGTTTTCTGGTTCGATTAATTTACTGTGGTCGCACAAAAATCCTCCGGAAATGGAAGCGGAAGCGGAAGGAATCGTAGAGCATCGAAGCTCGATAGCGGCTCCATGCATTTTCTTGGTCGTTATCGCTTTTCAATTTCTCGCTAGATGGCTGGAGCACCTGAAGAAGGTTCGCCTTTTCGCTTGATTTTTTTTTTCCGTCGGAATCTTGTTCATGTTTGTATTTTCTATCATTCTGCTTGCTTTTCAACCCTTAACTTGTTATTGATAGTCGAATTTTGAGGCCTACCTCAAATTTTGGGGCTGTAGCGCGTTTCAGTTTTTGCGTTGACAGGCTTAAGAATGCAATATTCCCTACTGTGCTTCGTGAAGTTCACGTTATTGGATTGAAGGCATTGTGATTTGATTAGTTTTGCGACGTGATGCATTCAATGTGGAGATCTATTGATGTTTTAAATCTTAATATCTAAGAAATTTGCTATGTTATAATTGTTATCCGTTCAATCTTGTCAATCTTTTTTGTTTTGAAACTCATGTTTCGATTATGTATGTGCTTTTCAGGGAGGTTCCAACAGCCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCGCAGTAAGTAGTGTTTTCCAGCTGGATTCAACATTAAACAGTGCCTAATTCGGCTCAAATCAATAATTCGGTAGCTTGTAACTGTTATGATTATCCTGGGGATCATATTTATTTGCTTTTATGTTCGTGTAGACCATCTACATTTGCACAGGCTGCAAAACTTCGGAGGTTGGCAGCCGCTAAGGAGAAGGAGCTGGCAAACTGTGAGGCTAATTAA

mRNA sequence

CGAGTTTGGGCTGGGCCTTGGATTTGGAGACCTTCTACTGAAGTCCATTTATTCATGTTCGAAGCCCAATGATAGGCCCAACTTCTTCCTGAATAACCTCCGTCGTATTCCAACGACCAACGGAGTTTTCTGGTTCGATTAATTTACTGTGGTCGCACAAAAATCCTCCGGAAATGGAAGCGGAAGCGGAAGGAATCGTAGAGCATCGAAGCTCGATAGCGGCTCCATGCATTTTCTTGGTCGTTATCGCTTTTCAATTTCTCGCTAGATGGCTGGAGCACCTGAAGAAGGGAGGTTCCAACAGCCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCGCAACCATCTACATTTGCACAGGCTGCAAAACTTCGGAGGTTGGCAGCCGCTAAGGAGAAGGAGCTGGCAAACTGTGAGGCTAATTAA

Coding sequence (CDS)

ATGGAAGCGGAAGCGGAAGGAATCGTAGAGCATCGAAGCTCGATAGCGGCTCCATGCATTTTCTTGGTCGTTATCGCTTTTCAATTTCTCGCTAGATGGCTGGAGCACCTGAAGAAGGGAGGTTCCAACAGCCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCGCAACCATCTACATTTGCACAGGCTGCAAAACTTCGGAGGTTGGCAGCCGCTAAGGAGAAGGAGCTGGCAAACTGTGAGGCTAATTAA

Protein sequence

MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELANCEAN

Homology

[Close]

BLAST of CmoCh16G013270 vs. ExPASy Swiss-Prot
Match: Q1H5D2 (Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-21
Identity = 55/85 (64.71%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 4  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 63
          E E ++E R  +AAP  F+VV+ FQ L++WL+ LKK GS +  E ELR  IKQLLREAS 
Sbjct: 2  EGEKLIEDRGFLAAPLTFVVVVVFQLLSKWLDQLKKKGSKNTRESELRTEIKQLLREASA 61

Query: 64 LSQPSTFAQAAKLRRLAAAKEKELA 89
          LSQP+TFAQAAKLRR AA KEKELA
Sbjct: 62 LSQPATFAQAAKLRRSAATKEKELA 86

[Close]

BLAST of CmoCh16G013270 vs. ExPASy TrEMBL
Match: A0A6J1E9M6 (uncharacterized protein LOC111431128 OS=Cucurbita moschata OX=3662 GN=LOC111431128 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.4e-38
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLRE 60
          MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLRE
Sbjct: 1  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLRE 60

Query: 61 ASTLSQPSTFAQAAKLRRLAAAKEKELAN 90
          ASTLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 61 ASTLSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]

BLAST of CmoCh16G013270 vs. ExPASy TrEMBL
Match: A0A6J1L884 (uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 2  EAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREA 61
          EAEAEGIVEHRSSIAAPCIFL+VIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREA
Sbjct: 4  EAEAEGIVEHRSSIAAPCIFLIVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREA 63

Query: 62 STLSQPSTFAQAAKLRRLAAAKEKELAN 90
          STLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 64 STLSQPSTFAQAAKLRRLAAAKEKELAN 91

[Close]

BLAST of CmoCh16G013270 vs. ExPASy TrEMBL
Match: A0A1S3BKE1 (uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.0e-34
Identity = 82/89 (92.13%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLRE 60
          ME EAEGIVEH SSIAAP IF +VI FQFLARWLEHLKKGGSNSQVE+ELRKSIKQLLRE
Sbjct: 1  MEMEAEGIVEHGSSIAAPFIFFIVIGFQFLARWLEHLKKGGSNSQVELELRKSIKQLLRE 60

Query: 61 ASTLSQPSTFAQAAKLRRLAAAKEKELAN 90
          ASTLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 61 ASTLSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]

BLAST of CmoCh16G013270 vs. ExPASy TrEMBL
Match: A0A0A0L4T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.1e-32
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 4  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 63
          E EGIVEHRSSIAAP IF +VI FQFLA+WLEHLKK GSNSQVEMELRKSIKQLL+EAST
Sbjct: 2  EPEGIVEHRSSIAAPFIFFIVIGFQFLAKWLEHLKKRGSNSQVEMELRKSIKQLLKEAST 61

Query: 64 LSQPSTFAQAAKLRRLAAAKEKELAN 90
          LSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 62 LSQPSTFAQAAKLRRLAAAKEKELAN 87

[Close]

BLAST of CmoCh16G013270 vs. ExPASy TrEMBL
Match: A0A6J1CUP1 (uncharacterized protein LOC111014752 OS=Momordica charantia OX=3673 GN=LOC111014752 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 78/89 (87.64%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLRE 60
          MEAEAEGIVEHRSS AAP IFLVVI FQFLARWLE  K+ GSN+ VEMELRKSIKQLL+E
Sbjct: 1  MEAEAEGIVEHRSSFAAPSIFLVVITFQFLARWLERTKRSGSNNDVEMELRKSIKQLLKE 60

Query: 61 ASTLSQPSTFAQAAKLRRLAAAKEKELAN 90
          AS LSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 61 ASALSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]

BLAST of CmoCh16G013270 vs. TAIR 10
Match: AT4G16444.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-22
Identity = 55/85 (64.71%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 4  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 63
          E E ++E R  +AAP  F+VV+ FQ L++WL+ LKK GS +  E ELR  IKQLLREAS 
Sbjct: 2  EGEKLIEDRGFLAAPLTFVVVVVFQLLSKWLDQLKKKGSKNTRESELRTEIKQLLREASA 61

Query: 64 LSQPSTFAQAAKLRRLAAAKEKELA 89
          LSQP+TFAQAAKLRR AA KEKELA
Sbjct: 62 LSQPATFAQAAKLRRSAATKEKELA 86

The following BLAST results are available for this feature:

BLAST of CmoCh16G013270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1H5D2	2.1e-21	64.71	Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1	[more]

BLAST of CmoCh16G013270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E9M6	4.4e-38	100.00	uncharacterized protein LOC111431128 OS=Cucurbita moschata OX=3662 GN=LOC1114311...	[more]
A0A6J1L884	2.8e-37	98.86	uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212...	[more]
A0A1S3BKE1	5.0e-34	92.13	uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=...	[more]
A0A0A0L4T9	6.1e-32	90.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1	[more]
A0A6J1CUP1	1.4e-31	87.64	uncharacterized protein LOC111014752 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of CmoCh16G013270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16444.1	1.5e-22	64.71	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 73..93
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 12..89
None	No IPR available	PANTHER	PTHR11760:SF40	SUBFAMILY NOT NAMED	coord: 12..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G013270.1	CmoCh16G013270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048767	root hair elongation
biological_process	GO:0071816	tail-anchored membrane protein insertion into ER membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0043529	GET complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043621	protein self-association