CmoCh16G013200 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G013200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ganglioside-induced differentiation-associated protein 2-like
Location	Cmo_Chr16: 9370688 .. 9371789 (-)
RNA-Seq Expression	CmoCh16G013200
Synteny	CmoCh16G013200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTTTGCCCCCACGTCCGCGCCATTCGCCTCTTCCGCCCAATGATCTGGAGTCCCTTTTAATCCTCTCCCGATCATCTTTATTTCTTCGTTTATTTTCCAAATCTCATCCTCCAATTCCGTTCTCCACCAAAATCCCTTCACTCCCTCCTTATCCCTAACCATTCTCTCAACGCTACTCGCTTTTTCCTTCTGATTCTACTTGGAATTCGTCTCATATGGCCGCTCAGGTTCAGCCTCCTCCGCCGGAGCAAAACCAACTCGAAAACCTCGACGTCTTCAAGATTAAAGGCAGAGACAAACAAGGCCGCCGGATTCTCCGCATTACCGGAAAATTCTTTCCAGGTTTCCTCTCTCTCTCATTCTTTATCGATGAAATTAATTTTTTGTCGTTTCTTTTGACCATTGAGTTTGAATGTGCTCAAGAAACATCTGTATGTTTTCCTTACCATGATCTGTTTCTGTTTTCTTGCTTTTTTCATGGATGAAATTAAATTTTTCTCGTTGTCATCCGCGCGAACTGTACGTTTGAATGTGCTCAAGAAGCATCTGGAATTTTCCGTAATCTGCTCTGATTTGATTTTCTTGCTCTGGTCTGCTTTTATTTACTTTTTTTTTTTTTTTTTATCAGATTGAATTTTCGCAGAGAAGCGTATGTAGATTTGCCTTACTACGCTCTGATTCGGTTTTCTTGCTCTGTTCTGTTTCTGTTTTCTTGTTCTTGACTGTGCTTAAGAAGTATCTGCATATTTGCACTGCTGTGCTCTGATTAAATTTCTAGCTGTTTTGAGCGATGAGATTGATGGTTCTTTTTTGAAAATCAGCACGGATTGTGAGTTTGGATGTGGTGAAGAAGCATCTGGAGGAGAAGATCTTCCCTAGGCTTAAGAACAAGCGTTTTACGATCTTGTACTTTCACACCGACGTTCAAAGGAGCCAAAATTTCCCCGGAATCGCCGCCCTCCGATCAATCTATGAAGCAATTCCAGCCACCGTCAAGGCTAATCTCGAGGCCGTGTACTTCGTTCACCCAGACCTCCAGGCCAGGCTCTTCCTCGCCACACTCGGCCGCATTTTCTTCACTAGCGAGTATATTTTCTAA

mRNA sequence

AATCTTTGCCCCCACGTCCGCGCCATTCGCCTCTTCCGCCCAATGATCTGGAGTCCCTTTTAATCCTCTCCCGATCATCTTTATTTCTTCGTTTATTTTCCAAATCTCATCCTCCAATTCCGTTCTCCACCAAAATCCCTTCACTCCCTCCTTATCCCTAACCATTCTCTCAACGCTACTCGCTTTTTCCTTCTGATTCTACTTGGAATTCGTCTCATATGGCCGCTCAGGTTCAGCCTCCTCCGCCGGAGCAAAACCAACTCGAAAACCTCGACGTCTTCAAGATTAAAGGCAGAGACAAACAAGGCCGCCGGATTCTCCGCATTACCGGAAAATTCTTTCCAGCACGGATTGTGAGTTTGGATGTGGTGAAGAAGCATCTGGAGGAGAAGATCTTCCCTAGGCTTAAGAACAAGCGTTTTACGATCTTGTACTTTCACACCGACGTTCAAAGGAGCCAAAATTTCCCCGGAATCGCCGCCCTCCGATCAATCTATGAAGCAATTCCAGCCACCGTCAAGGCTAATCTCGAGGCCGTGTACTTCGTTCACCCAGACCTCCAGGCCAGGCTCTTCCTCGCCACACTCGGCCGCATTTTCTTCACTAGCGAGTATATTTTCTAA

Coding sequence (CDS)

ATGGCCGCTCAGGTTCAGCCTCCTCCGCCGGAGCAAAACCAACTCGAAAACCTCGACGTCTTCAAGATTAAAGGCAGAGACAAACAAGGCCGCCGGATTCTCCGCATTACCGGAAAATTCTTTCCAGCACGGATTGTGAGTTTGGATGTGGTGAAGAAGCATCTGGAGGAGAAGATCTTCCCTAGGCTTAAGAACAAGCGTTTTACGATCTTGTACTTTCACACCGACGTTCAAAGGAGCCAAAATTTCCCCGGAATCGCCGCCCTCCGATCAATCTATGAAGCAATTCCAGCCACCGTCAAGGCTAATCTCGAGGCCGTGTACTTCGTTCACCCAGACCTCCAGGCCAGGCTCTTCCTCGCCACACTCGGCCGCATTTTCTTCACTAGCGAGTATATTTTCTAA

Protein sequence

MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFLATLGRIFFTSEYIF

Homology

[Close]

BLAST of CmoCh16G013200 vs. ExPASy Swiss-Prot
Match: Q7JUR6 (Protein GDAP2 homolog OS=Drosophila melanogaster OX=7227 GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-09
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 25  GRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRFTILYFHTDVQRSQNFP 84
           G D+ GR ++   GK+FPA+ + L+    +L + + P +K   + I YFHT +  + N+P
Sbjct: 388 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDPIVKGD-YVISYFHT-LTSTNNYP 447

Query: 85  GIAALRSIYEAIPATVKANLEAVYFVHPDLQARL 119
            +  LR +Y  +P   K NL+A Y VHP    ++
Sbjct: 448 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKM 479

[Close]

BLAST of CmoCh16G013200 vs. ExPASy Swiss-Prot
Match: Q292F9 (Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA15091 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-09
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 25  GRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRFTILYFHTDVQRSQNFP 84
           G D+ GR ++   GK+FPA+ + L+    +L + + P +K   + I YFHT +  + N+P
Sbjct: 390 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDPIVKGD-YVISYFHT-LTSTNNYP 449

Query: 85  GIAALRSIYEAIPATVKANLEAVYFVHPDLQARL 119
            +  LR +Y  +P   K NL+A Y VHP    ++
Sbjct: 450 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKM 481

[Close]

BLAST of CmoCh16G013200 vs. ExPASy Swiss-Prot
Match: A7T167 (Protein GDAP2 homolog OS=Nematostella vectensis OX=45351 GN=gdap2 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 26/94 (27.66%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 25  GRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRFTILYFHTDVQRSQNFP 84
           G D  GR ++    + F A+   L     +    +  R+ N+ + ++YFHT     +N P
Sbjct: 346 GVDFLGRPVVVFVARHFTAQNTDLGKAVAYF-ISVLDRIVNRDYVVVYFHTH-STEENQP 405

Query: 85  GIAALRSIYEAIPATVKANLEAVYFVHPDLQARL 119
            ++ L+ +Y  +    + NL+A Y VHP + AR+
Sbjct: 406 PMSFLKELYHIVDNKYRRNLKAFYIVHPTVWARI 437

[Close]

BLAST of CmoCh16G013200 vs. ExPASy TrEMBL
Match: A0A6J1L134 (ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111500201 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.2e-66
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF
Sbjct: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSE 132
           ATLGRIFFTSE
Sbjct: 121 ATLGRIFFTSE 131

[Close]

BLAST of CmoCh16G013200 vs. ExPASy TrEMBL
Match: A0A6J1E710 (ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111431194 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.2e-66
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF
Sbjct: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSE 132
           ATLGRIFFTSE
Sbjct: 121 ATLGRIFFTSE 131

[Close]

BLAST of CmoCh16G013200 vs. ExPASy TrEMBL
Match: A0A0A0L0Z7 (CRAL-TRIO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002450 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.9e-61
Identity = 121/131 (92.37%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           MAA + PPPPEQN LE LDVFKIKGRDKQGRRILRITGKFFPAR+VSLDV+KKHLEEKIF
Sbjct: 1   MAAHLPPPPPEQNYLEKLDVFKIKGRDKQGRRILRITGKFFPARVVSLDVLKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHT VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSE 132
           ATLGRIFFTSE
Sbjct: 121 ATLGRIFFTSE 131

[Close]

BLAST of CmoCh16G013200 vs. ExPASy TrEMBL
Match: A0A1S3BJ81 (ganglioside-induced differentiation-associated protein 2 OS=Cucumis melo OX=3656 GN=LOC103490659 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.6e-60
Identity = 120/131 (91.60%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           MAA + PPPPEQN LE LDVFKIKGRDKQGRRILRITGKFFPAR+VSLDV+KKHLEEKIF
Sbjct: 1   MAALLHPPPPEQNYLEKLDVFKIKGRDKQGRRILRITGKFFPARVVSLDVLKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFH+ VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHSGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSE 132
           ATLGRIFFTSE
Sbjct: 121 ATLGRIFFTSE 131

[Close]

BLAST of CmoCh16G013200 vs. ExPASy TrEMBL
Match: A0A6J1I6H6 (ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111470075 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.0e-59
Identity = 119/131 (90.84%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           M+AQ+QPPPPEQNQLE  DVFKIKGRDKQ RRILRI GKFFPAR VSLDVVK HLEEKIF
Sbjct: 1   MSAQIQPPPPEQNQLEKFDVFKIKGRDKQCRRILRIVGKFFPARTVSLDVVKNHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHT VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQAR+FL
Sbjct: 61  PRLKNKRFTILYFHTSVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARVFL 120

Query: 121 ATLGRIFFTSE 132
           ATLGRIFFTSE
Sbjct: 121 ATLGRIFFTSE 131

[Close]

BLAST of CmoCh16G013200 vs. TAIR 10
Match: AT4G35750.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein )

HSP 1 Score: 167.9 bits (424), Expect = 5.4e-42
Identity = 83/129 (64.34%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           M++Q+     EQ  +E L++FKI GRDK+GR+ILRI GKFFPAR +SLDV+KK+LEEKIF
Sbjct: 1   MSSQISEIEQEQ-LIEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRL  K F +LY HT VQRS+NFPGI+ALR+IY+AIP  V+ NL+ VYF+HP LQ+RLFL
Sbjct: 61  PRLGRKPFAVLYVHTGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFL 120

Query: 121 ATLGRIFFT 130
           AT GR  F+
Sbjct: 121 ATCGRFLFS 128

[Close]

BLAST of CmoCh16G013200 vs. TAIR 10
Match: AT3G10210.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein )

HSP 1 Score: 111.7 bits (278), Expect = 4.6e-25
Identity = 51/117 (43.59%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 13  NQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRFTILY 72
           + L+ L  F ++G D+ G RI RI GK+FPAR+VS + +KK++ +KI  +       ++Y
Sbjct: 47  SDLDLLQFFTLQGLDRSGNRIFRIVGKYFPARVVSAERLKKYISQKISNQCPEGPLCLVY 106

Query: 73  FHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFLATLGRIFFT 130
            H+ VQ+  N PGI  LR IYE +P+ +K  L+ VYF+HP L++RL +ATLGR+  +
Sbjct: 107 MHSTVQKDDNSPGITILRWIYEDLPSDIKDRLQLVYFIHPGLRSRLVIATLGRLLLS 163

The following BLAST results are available for this feature:

BLAST of CmoCh16G013200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7JUR6	5.9e-09	34.04	Protein GDAP2 homolog OS=Drosophila melanogaster OX=7227 GN=Gdap2 PE=2 SV=1	[more]
Q292F9	5.9e-09	34.04	Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA15...	[more]
A7T167	1.2e-04	27.66	Protein GDAP2 homolog OS=Nematostella vectensis OX=45351 GN=gdap2 PE=3 SV=1	[more]

BLAST of CmoCh16G013200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L134	4.2e-66	100.00	ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxim...	[more]
A0A6J1E710	4.2e-66	100.00	ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita mosch...	[more]
A0A0A0L0Z7	6.9e-61	92.37	CRAL-TRIO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002450 P...	[more]
A0A1S3BJ81	2.6e-60	91.60	ganglioside-induced differentiation-associated protein 2 OS=Cucumis melo OX=3656...	[more]
A0A6J1I6H6	1.0e-59	90.84	ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxim...	[more]

BLAST of CmoCh16G013200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35750.1	5.4e-42	64.34	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein...	[more]
AT3G10210.1	4.6e-25	43.59	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001251	CRAL-TRIO lipid binding domain	PFAM	PF13716	CRAL_TRIO_2	coord: 30..130 e-value: 1.2E-17 score: 64.5
IPR036865	CRAL-TRIO lipid binding domain superfamily	GENE3D	3.40.525.10		coord: 11..133 e-value: 3.6E-18 score: 67.7
None	No IPR available	PANTHER	PTHR11106:SF103	OS04G0561200 PROTEIN	coord: 10..132
None	No IPR available	PANTHER	PTHR11106	GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED	coord: 10..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G013200.1	CmoCh16G013200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0048038	quinone binding