CmoCh16G013030 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G013030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 9275144 .. 9275551 (+)
RNA-Seq ExpressionCmoCh16G013030
SyntenyCmoCh16G013030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCGATAATCAATATATTTCAACTCTCAGAGGAAATCCGAAGCTCCTTGATCTTGAATCTGTATCTAGGAGCTCGGGGAATAACCTGGCTAGGTCCGAAGTGGTACTGACCAGGACTATCGGTGAGAGGAGGCCCATCGTCGTAAACATAGCCGACGAGACGCGCACATGAATTGCACTTGATCTTGGTGCGATTCCGCTGGATTCCCCAATAGTTGACGGTCTCGAAGAATGGCCGGAGCTTGTCCTCTTTCTCGAGCCTGAACTTGGTGGAGTCGATCAAGGAAAACGAAAGCGTGCCCTTGTTTCCGGCCTCGAAATAGAAATCCGGCGGGAAGAGATGACTGGAATTCAGATTCAGATTTGCTCCGCATTCTGCACAACAATAGATGGAAGCCATTGTTGA

mRNA sequence

ATGCGCGATAATCAATATATTTCAACTCTCAGAGGAAATCCGAAGCTCCTTGATCTTGAATCTGTATCTAGGAGCTCGGGGAATAACCTGGCTAGGTCCGAAGTGGTACTGACCAGGACTATCGTTGACGGTCTCGAAGAATGGCCGGAGCTTGTCCTCTTTCTCGAGCCTGAACTTGGTGGAGTCGATCAAGGAAAACGAAAGCGTGCCCTTGTTTCCGGCCTCGAAATAGAAATCCGGCGGGAAGAGATGACTGGAATTCAGATTCAGATTTGCTCCGCATTCTGCACAACAATAGATGGAAGCCATTGTTGA

Coding sequence (CDS)

ATGCGCGATAATCAATATATTTCAACTCTCAGAGGAAATCCGAAGCTCCTTGATCTTGAATCTGTATCTAGGAGCTCGGGGAATAACCTGGCTAGGTCCGAAGTGGTACTGACCAGGACTATCGTTGACGGTCTCGAAGAATGGCCGGAGCTTGTCCTCTTTCTCGAGCCTGAACTTGGTGGAGTCGATCAAGGAAAACGAAAGCGTGCCCTTGTTTCCGGCCTCGAAATAGAAATCCGGCGGGAAGAGATGACTGGAATTCAGATTCAGATTTGCTCCGCATTCTGCACAACAATAGATGGAAGCCATTGTTGA

Protein sequence

MRDNQYISTLRGNPKLLDLESVSRSSGNNLARSEVVLTRTIVDGLEEWPELVLFLEPELGGVDQGKRKRALVSGLEIEIRREEMTGIQIQICSAFCTTIDGSHC
Homology
BLAST of CmoCh16G013030 vs. ExPASy TrEMBL
Match: A5CB28 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034433 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 30/64 (46.88%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 37  LTRTIVDGLEEWPELVLFLEPELGGVDQGKRKRALVSGLEIEIRREEMTGIQIQICSAFC 96
           L   ++ GLE+ P+LVLFLE EL GVD  + + A V+G+E+E+R EE+ G+++++ SAF 
Sbjct: 34  LDSPVIQGLEKGPDLVLFLESELXGVDACEGEGAFVAGVEVEVRWEEVGGVKVEVGSAFP 93

Query: 97  TTID 101
           T +D
Sbjct: 94  TAVD 97

BLAST of CmoCh16G013030 vs. ExPASy TrEMBL
Match: A0A6A2WCL8 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117012pilonHSYRG00019 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.5e-07
Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 0

Query: 8   STLRGNPKLLDLESVSRSSGNNLARSEVVLTRTI-------------------------- 67
           S+ R N + L LE++ + SG++LA  ++ LT TI                          
Sbjct: 5   SSFRDNLECLGLEAIPKGSGDHLAGPKMPLTETICERRAIIINMTHKFPATITLDLGSVP 64

Query: 68  -----VDGLEEWPELVLFLEPELGGVDQGKRKRALVSGLEIEIRRE 83
                ++GLEE PELVLFLE E+G +D G+RK ALVS LE+EI RE
Sbjct: 65  VGSPVINGLEERPELVLFLEVEVGLIDHGERKGALVSRLEVEIWRE 110

BLAST of CmoCh16G013030 vs. ExPASy TrEMBL
Match: A0A498HVY7 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029681 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 0

Query: 10  LRGNPKLLDLESVSRSSGNNLARSEVVLTRTIVDGLEEWPELVLFLEPELGGVDQGKRKR 69
           L G+  LL   + S+ S + L      L   +V  LEE  +LVL +EPELG VD+ KR R
Sbjct: 147 LCGSHALLIPHNFSKHSKHALDLRPRPLDPPVVSSLEERSDLVLLVEPELGCVDRRKRHR 206

Query: 70  ALVSGLEIEIRREEMTGIQIQICSAFCTTID 101
           +LVSGLE E+RR E+   ++Q+ SA    +D
Sbjct: 207 SLVSGLEEEVRRIEIRSGKVQVGSALRAGVD 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A5CB282.0e-0746.88Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034433 PE=4 SV=1[more]
A0A6A2WCL84.5e-0739.62Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117012pilon... [more]
A0A498HVY72.9e-0642.86Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029681 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G013030.1CmoCh16G013030.1mRNA