CmoCh16G012970 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SKP1-like protein
Location	Cmo_Chr16: 9240250 .. 9241882 (+)
RNA-Seq Expression	CmoCh16G012970
Synteny	CmoCh16G012970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAAAAAGAAAGTGAATTAAAATAACCGCCGGGCAGCGGCTGGCCCTGTGGCAAGAATCTATATAAACCGGTTCTTGGAAACCCAAAGTTCTCCAACTTTTCTTCTTCGTCCTCTTCTTCACAAAAATCACCATCAATTTTTCTGCTAATCCAAATCCATGTCCTCCTCCAAGAAGATTACTCTCAAGAGCTCCGATGGCGAGTCTTTTGAAATCGACGAGGTCGTTGCTCTCGAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTTCCCAACGTCACTAGCAAGATCCTCGTCAAGGTCATCGAGTACTGTCACAAGCACGTCGATGCGTCCTCCGCCGATCCCCGCGTGTCTGAAGAGGATCTCAAGGCCTGGGACCGCGATTTCGTTAATGTCGACCAAGCCACTCTTTTCGATCTCATTCTGGTAACCTTTTCTTCCTGATTTAGATCGATCGACTCGATTGTCTAGGGTTTACCTGGTTCCTATGGTTTTTTTTTTCAAGAATTTGACTCGGCAAACAATCGCTTTGATCTTCTTTGTCGCTGATTACTATTTTTCTTTATCTGATATATCTGCATCGACGTTTGTAATTCTGCTAGGGCTTGTTATTGTTTGATGTTTTGGAAATGGAAAGTTCGTTCAAAGGAAAAGTTCTACTGGAAATTGTTCAGTATTGTTGATCAATTGGTATGGTGCCTAAGTAATGGATTAAGATTCAATAGGACGAGCATGGTCTTTTCACTTTGATGATTGAAGACGGTGATGCAAAATGCTTTCGGCATCATTATCCTTTGTCCTTCATGTTGAGATTGGGGTTAATGGACATCTGTATTTGGCGTCATATTGAAATGATTGTTGCTTAGGTTAATCTTCGTGGTTCTATATTTAAGCCGTGTTCTTGTTGCAGAGAATTCCAAGCTGCCTGGGGCTTCATTCTTGACTATTATTATTCTTGATAATTTCTTGATTTGGCGCCATATAAAATTCTCTCCTATATTCTACTCTGCAGGCTGCAAATTATCTGAACATCAAGAGCTTGTTAGACCTGACATGCCAGACCGTAGCTGACATGATCAAGGGAAAGACCCCAGAGGAGATCCGAAAGACCTTTAACATCAAGAACGATTTCACACCTGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGATTTGAAGTCTCATAAGAGTGCTCAAGGATCTTGATCAATAAGGTCTGTACATGGTAGTAGTATTCGATCTCTGTTGTATTCACATAGTTTGTGAAAATGGTACTGTATGAACCTAATCATAATTGTATCATGATCATGTTTGTGTGAGGAATGCATTGACTACGTAATTGTCTCATACCATCATTATGTTAAATTTTGATAGTAGCCTATGCTCTAGTTATCTTGTCTCCCCATAATTGAAGCCTTGTGAGGGAAGGGAGGAAGCCATGTTGCCTAGACTCTCTTCTCAATTCTCACTACTCGACTTTGTTTTTGTGTTTCTTGTTGCTTGATGCTCTGTTCCACTTTCGTCGACTTATGTGCTCTGTGTTTGTCATCGGACTTCTTTATTATGTGTTTGTTGTTGGACTTCTCCGCTCG

mRNA sequence

TAAAAAAAGAAAGTGAATTAAAATAACCGCCGGGCAGCGGCTGGCCCTGTGGCAAGAATCTATATAAACCGGTTCTTGGAAACCCAAAGTTCTCCAACTTTTCTTCTTCGTCCTCTTCTTCACAAAAATCACCATCAATTTTTCTGCTAATCCAAATCCATGTCCTCCTCCAAGAAGATTACTCTCAAGAGCTCCGATGGCGAGTCTTTTGAAATCGACGAGGTCGTTGCTCTCGAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTTCCCAACGTCACTAGCAAGATCCTCGTCAAGGTCATCGAGTACTGTCACAAGCACGTCGATGCGTCCTCCGCCGATCCCCGCGTGTCTGAAGAGGATCTCAAGGCCTGGGACCGCGATTTCGTTAATGTCGACCAAGCCACTCTTTTCGATCTCATTCTGGCTGCAAATTATCTGAACATCAAGAGCTTGTTAGACCTGACATGCCAGACCGTAGCTGACATGATCAAGGGAAAGACCCCAGAGGAGATCCGAAAGACCTTTAACATCAAGAACGATTTCACACCTGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGATTTGAAGTCTCATAAGAGTGCTCAAGGATCTTGATCAATAAGGTCTGTACATGGTAGTAGTATTCGATCTCTGTTGTATTCACATAGTTTGTGAAAATGGTACTGTATGAACCTAATCATAATTGTATCATGATCATGTTTGTGTGAGGAATGCATTGACTACGTAATTGTCTCATACCATCATTATGTTAAATTTTGATAGTAGCCTATGCTCTAGTTATCTTGTCTCCCCATAATTGAAGCCTTGTGAGGGAAGGGAGGAAGCCATGTTGCCTAGACTCTCTTCTCAATTCTCACTACTCGACTTTGTTTTTGTGTTTCTTGTTGCTTGATGCTCTGTTCCACTTTCGTCGACTTATGTGCTCTGTGTTTGTCATCGGACTTCTTTATTATGTGTTTGTTGTTGGACTTCTCCGCTCG

Coding sequence (CDS)

ATGTCCTCCTCCAAGAAGATTACTCTCAAGAGCTCCGATGGCGAGTCTTTTGAAATCGACGAGGTCGTTGCTCTCGAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTTCCCAACGTCACTAGCAAGATCCTCGTCAAGGTCATCGAGTACTGTCACAAGCACGTCGATGCGTCCTCCGCCGATCCCCGCGTGTCTGAAGAGGATCTCAAGGCCTGGGACCGCGATTTCGTTAATGTCGACCAAGCCACTCTTTTCGATCTCATTCTGGCTGCAAATTATCTGAACATCAAGAGCTTGTTAGACCTGACATGCCAGACCGTAGCTGACATGATCAAGGGAAAGACCCCAGAGGAGATCCGAAAGACCTTTAACATCAAGAACGATTTCACACCTGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGA

Protein sequence

MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCHKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

[Close]

BLAST of CmoCh16G012970 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.1e-66
Identity = 124/159 (77.99%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCHK 62
           S+KKI LKSSDGESFE++E VALESQTI HM+EDDC DNG+PLPNVTSKIL KVIEYC +
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSADPR------VSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTV 122
           HV+A+++          S++DLKAWD DF+ +DQATLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CmoCh16G012970 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.1e-66
Identity = 131/171 (76.61%), Postives = 142/171 (83.04%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60
           MS+ +KITLKSSDGE+FEIDE VALESQTI+HMIEDDC DNGIPLPNVTSKIL KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  HKHVDA-----SSADPRV-----------SEEDLKAWDRDFVNVDQATLFDLILAANYLN 120
            +HV+A     ++AD              S+EDLK WD +F+ VDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CmoCh16G012970 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-65
Identity = 130/166 (78.31%), Postives = 137/166 (82.53%), Query Frame = 0


Query: 5   KKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCHKHV 64
           K ITLKSSDGE FE++E VA+ESQTIRHMIEDDCADNGIPLPNV SKIL KVIEYC+KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  ---------------DASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLL 124
                           A++A P  S EDLK WD DFV VDQATLFDLILAANYLNIK LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of CmoCh16G012970 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.6e-58
Identity = 118/165 (71.52%), Postives = 134/165 (81.21%), Query Frame = 0


Query: 7   ITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCHKHVD- 66
           ITL+S +G+ FE+ E VA+ESQTIRHMIED CAD GIPLPNV++KIL KVIEYC KHV+ 
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  ----ASSAD-----------PRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLD 126
               A++AD            +  E++LK +D +FV VDQ+TLFDLILAANYLNIK LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of CmoCh16G012970 vs. ExPASy Swiss-Prot
Match: O49484 (SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.0e-57
Identity = 113/153 (73.86%), Postives = 131/153 (85.62%), Query Frame = 0


Query: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCHK 62
           SSK I L SSDG+SFE++E VA++SQTI HM+EDDC  +GIPL NV SKILVKVIEYC K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 122
           H     A+P +SEEDL  WD  F++++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKG
Sbjct: 62  H-HVDEANP-ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CmoCh16G012970 vs. ExPASy TrEMBL
Match: A0A6J1EBI5 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 7.7e-80
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60
           MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60

Query: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120
           HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh16G012970 vs. ExPASy TrEMBL
Match: A0A6J1HJY3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.2e-79
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60
           MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKIL KVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120
           HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh16G012970 vs. ExPASy TrEMBL
Match: A0A6J1CWB0 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.7e-74
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60
           MSSSKKI LKSSDGE FE+DE VALESQTIRHMIEDDCADNGIPLPNV+SKIL KVIEYC
Sbjct: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60

Query: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120
            KHVDAS+++PR SEEDLKAWDRDFVNVDQATLFDLILAANYLNIK+LLDLTCQTVADMI
Sbjct: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh16G012970 vs. ExPASy TrEMBL
Match: A0A6J5VI66 (SKP1-like protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45864 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.5e-72
Identity = 139/154 (90.26%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 2   SSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCH 61
           SSSKKITLKSSDGESFE++E VALESQTI+HMIEDDCADNGIPLPNVTSKIL KVIEYC 
Sbjct: 3   SSSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 121
           KHVDA+  D ++SE+DLKAWD+DFV VDQATLFDLILAANYLNIKSLLDLTCQTVADMIK
Sbjct: 63  KHVDAAKPDEKISEDDLKAWDQDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 122

Query: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of CmoCh16G012970 vs. ExPASy TrEMBL
Match: A0A6P5SPM9 (SKP1-like protein OS=Prunus avium OX=42229 GN=LOC110758167 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.7e-72
Identity = 139/154 (90.26%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 2   SSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCH 61
           SSSKKITLKSSDGESFE++E VALESQTI+HMIEDDCADNGIPLPNVTSKIL KVIEYC 
Sbjct: 3   SSSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 121
           KHVDA+  D ++SE+DLKAWD DFV VDQATLFDLILAANYLNIKSLLDLTCQTVADMIK
Sbjct: 63  KHVDAAKPDEKISEDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 122

Query: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of CmoCh16G012970 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 251.5 bits (641), Expect = 4.3e-67
Identity = 124/159 (77.99%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCHK 62
           S+KKI LKSSDGESFE++E VALESQTI HM+EDDC DNG+PLPNVTSKIL KVIEYC +
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSADPR------VSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTV 122
           HV+A+++          S++DLKAWD DF+ +DQATLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CmoCh16G012970 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 251.5 bits (641), Expect = 4.3e-67
Identity = 131/171 (76.61%), Postives = 142/171 (83.04%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60
           MS+ +KITLKSSDGE+FEIDE VALESQTI+HMIEDDC DNGIPLPNVTSKIL KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  HKHVDA-----SSADPRV-----------SEEDLKAWDRDFVNVDQATLFDLILAANYLN 120
            +HV+A     ++AD              S+EDLK WD +F+ VDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CmoCh16G012970 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 224.2 bits (570), Expect = 7.4e-59
Identity = 113/153 (73.86%), Postives = 131/153 (85.62%), Query Frame = 0


Query: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCHK 62
           SSK I L SSDG+SFE++E VA++SQTI HM+EDDC  +GIPL NV SKILVKVIEYC K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 122
           H     A+P +SEEDL  WD  F++++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKG
Sbjct: 62  H-HVDEANP-ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CmoCh16G012970 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 222.2 bits (565), Expect = 2.8e-58
Identity = 114/154 (74.03%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCHK 62
           SSK I L SSDG+SFE++E VA++SQTI HM+EDDC  +GIPL NV SKILVKVIEYC K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 122
            HVD   A+P +SEEDL  WD  F++++Q+T+F+LILAANYLNIKSL DLTCQTVADMIK
Sbjct: 62  YHVD--EANP-ISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 121

Query: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CmoCh16G012970 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 214.2 bits (544), Expect = 7.6e-56
Identity = 108/160 (67.50%), Postives = 126/160 (78.75%), Query Frame = 0


Query: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCHK 62
           + K I LKSSDGESFEI+E VA++SQTI+HMIEDDCADNGIPLPNVT  IL KVIEYC K
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVDASSAD-------PRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQT 122
           HV+A++              ++LK WD +FV VDQ TLFDLILAANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

The following BLAST results are available for this feature:

BLAST of CmoCh16G012970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39255	6.1e-66	77.99	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q9FHW7	6.1e-66	76.61	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q6PL11	1.0e-65	78.31	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	3.6e-58	71.52	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
O49484	1.0e-57	73.86	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1	[more]

BLAST of CmoCh16G012970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EBI5	7.7e-80	100.00	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1	[more]
A0A6J1HJY3	2.2e-79	99.35	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1	[more]
A0A6J1CWB0	3.7e-74	92.26	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1	[more]
A0A6J5VI66	4.5e-72	90.26	SKP1-like protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45864 PE=3 SV=1	[more]
A0A6P5SPM9	7.7e-72	90.26	SKP1-like protein OS=Prunus avium OX=42229 GN=LOC110758167 PE=3 SV=1	[more]

BLAST of CmoCh16G012970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	4.3e-67	77.99	S phase kinase-associated protein 1	[more]
AT5G42190.1	4.3e-67	76.61	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34210.1	7.4e-59	73.86	SKP1-like 11	[more]
AT4G34470.1	2.8e-58	74.03	SKP1-like 12	[more]
AT1G20140.1	7.6e-56	67.50	SKP1-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 2.1E-52 score: 190.1
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 1.9E-30 score: 104.6
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 2.8E-30 score: 104.3
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 3.1E-67 score: 223.4
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..155
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..155 e-value: 9.8E-75 score: 252.1
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 5..65
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..155
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 7.85061E-59 score: 176.629
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012970.1	CmoCh16G012970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding