CmoCh16G012630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribosomal L28 family
Location	Cmo_Chr16: 9006969 .. 9009789 (+)
RNA-Seq Expression	CmoCh16G012630
Synteny	CmoCh16G012630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTATGAACCTCTTTTCTTTCCTTTATTTTTTTCAAAATCTATGGTCGATTCTCTCTGAATTTGGATGCATTTTATTGATTTAATTCCGTGGTTCGAAACCATTAGTCCCTTTCCCAATATGAGCATAGCTTAACGGTTAAAGGATATCATGTTAAGCCCAAGCCTGCCGCTAGCCGATATTGAACTCTTTGAACTTTCCCTTTTGAGCTTCCCCTCAAGGTTTTAAAACGCGTCCACTATGGAGAGGTTTCCACACCCTTGTAAGAAATGTTTCGTTCTCCTCTCCAACCAATGTGGGATCTCATAATCCACCCCCTTGGAGGTTAGCGTCCTTGCTCTAACACACTGCCCAGTGTTTGATTCTGATACCATTTGTAATAGCCTAAGTCCACCTCTAACAAATATTGTCTTCTTTGAGATTTCCCTACTGGGCTTCCCCTCAAGGTTTTAAAATGCATCTACTATGGAGAAGTTTCTACACTCTTGTAAGAAATGTTTCATCCCCCTCTCCAACCAATGTAGGATCTCACAATCCACCTCCTTGGAGGTTAGTGTGACACACCGCCCAGTGTCTGGCTCTGATACCATTTATAATAGCCTAAGCCCACTGCTAACAGATATTGTTCTCTTTGAGATTTCCCTGCTGGGCTTCCTCTCAAGGTTTTAAAACGTGTCTACTAGGGAGAGATTTCCACACCCTTGTAAGGAATGTTTCGTTCCCCTCTCCAACCAAGGTGGGATCTCATAATCCACCCCCTTGGAGGTCAGCGTCCTCACTGACACATCACCCGGTGTCTGGCTCTGATACCATTTGTAATAGTCTAAGCCCACCGCTAGCAGATATTGTCCTCTTTAGGATTTCTCTGTTGGGCTTCCCCTCAAGGTTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCTCCTCTTCAACCAATGTGAGATCTCACACATCAACCTCTACCTTTTTTTTTTTTTCCTTCGAACTAGTTCAAATTTCCACACCCACACCAAAAAAAAAAAAAGAGAGAGAGAGAGAGATCTTTAGTCCCTTTTAATTGCATAGCTAGATTTATTGTTTTTTACAATTGCAAGTGAAGGCGCCATAAATGAATAAATTCATAGCATCAAAGACATTTGGCAGAAAATTCTTGCTGTTACTATTTCAAAACTTTACGTCTTTGTGTTCATGCTTCTGATTTTTTCTTATCTGTTTGTTGCTGCCTTCTTGATGAGTGTTTGGATTTTGGATGCGGGGTTAGCATATGAATCAATTGTTCTGCTAAAATTCTTAACCACACTACTTGATTACGACTTGTAGTTAGAATCAAGTGGAGATGTTGTAATTGCTTTGCTCTGAGGTTTTTATGCCCCACTCCTTTTGTCAATCTATGAACATGTGGAAGAACCCTAAGATAGGGTGATTGGGGGCGTAAAGTCGGGCTTCAGCGTGTGTCTCGCTTCCTAAGCCCAACAGCCCCGACCCTCTGTTTGACAATCCAAGTTCGAGAAACCAACCGGCTCAAACAACATCCTACTATTCAACCCCTCTGCTCACTATTTCGACCCAAGCTTCCTAAACTTGTGCCCCCAAATACAGAACCTGTGAACCCAAATGGTCCATTAGATTTTGGGAAGAGAAAATGAACTTATAGTGGTGTTTCCTTCTGTGTGTGAACGTTATTGGTTTTTGCTTTATGTTTGTAGCCTTATATTTACATGTCAAGGGTATGCCTCTCTTGCTCTTGTATTAAGAAATTCGAGAGCACGATATAATAATTTTGTTTTCTTCCTTTGTTTCGGCCTTATGTCATATAAGGGTTCGGTGCGTTTTACGATTATTTACGATTATTTTGTCATGCTATCAATTTTCAATTTTGGAGTATTAGCCGTTATGTGCTGGTGCTTATAGGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACATGATCAGATCGAAGAGGGACAAGCAGACCGCGCTGGATCTAGCGAGGAAGTTGCAGGTTCGGAAGGAGGCTCCCATGGTGATGATGGTCCACAGCAATGTGTTGCCAACGCCTAATTAATCATAGGACACCTTTTTTCCAACTTGGGAATTCTTCAAGCCTTGACTTGTTCCTACCTTTTCCAAGAGTTGTTTACTCTCATCTTCACTGAAATCCTTTGTAGCTTATTTGGTTTAATGTTAACTACTTCAGATAGAAATGAGAATTGTTTTTTGGAAATTGAGATGTGAAATCTTAAAACTTATTGTTCAATAAGATTGGGCTTAATATATGATTTCCCCAT

mRNA sequence

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACATGATCAGATCGAAGAGGGACAAGCAGACCGCGCTGGATCTAGCGAGGAAGTTGCAGGTTCGGAAGGAGGCTCCCATGGTGATGATGGTCCACAGCAATGTGTTGCCAACGCCTAATTAATCATAGGACACCTTTTTTCCAACTTGGGAATTCTTCAAGCCTTGACTTGTTCCTACCTTTTCCAAGAGTTGTTTACTCTCATCTTCACTGAAATCCTTTGTAGCTTATTTGGTTTAATGTTAACTACTTCAGATAGAAATGAGAATTGTTTTTTGGAAATTGAGATGTGAAATCTTAAAACTTATTGTTCAATAAGATTGGGCTTAATATATGATTTCCCCAT

Coding sequence (CDS)

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACATGATCAGATCGAAGAGGGACAAGCAGACCGCGCTGGATCTAGCGAGGAAGTTGCAGGTTCGGAAGGAGGCTCCCATGGTGATGATGGTCCACAGCAATGTGTTGCCAACGCCTAA

Protein sequence

MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQHDQIEEGQADRAGSSEEVAGSEGGSHGDDGPQQCVANA

Homology

[Close]

BLAST of CmoCh16G012630 vs. ExPASy Swiss-Prot
Match: P36525 (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 9.4e-12
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 30  KKCIPDSKI----VMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++ +G++ G  +QFGN ISE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKAGGIDEYLLK 114
           +R I +K+T   L+ I K GGID YL K
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTK 138

[Close]

BLAST of CmoCh16G012630 vs. ExPASy Swiss-Prot
Match: A0L5U1 (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rpmB PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-10
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 43  AKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A++    G+  Q GN++S     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSH-SQRKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KAGGIDEYLLK 114
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

[Close]

BLAST of CmoCh16G012630 vs. ExPASy Swiss-Prot
Match: A9HS05 (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / CCUG 37298 / CIP 103539 / LMG 7603 / PAl5) OX=272568 GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-09
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 43  AKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN +S    NKSRR + PN+QE  L S IL   +R++++T+ +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTE 123
             GG+D +LL TP  K+ TE
Sbjct: 62  HNGGLDAFLLSTPNRKLPTE 80

[Close]

BLAST of CmoCh16G012630 vs. ExPASy Swiss-Prot
Match: Q5FUP5 (50S ribosomal protein L28 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-09
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 43  AKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN +S    NKSRR + PN+QE  L S IL   +R++++T  +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETTLISDILGASVRMRLSTDGIRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTE 123
             GG+D +LL TP  K+ TE
Sbjct: 62  HNGGLDSFLLGTPNRKLPTE 80

[Close]

BLAST of CmoCh16G012630 vs. ExPASy Swiss-Prot
Match: B6IW31 (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-08
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 50  GRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ +Q GN +S    NKSRR W PN+QE  L S  L R +R++++T+ +R I+  GG+D 
Sbjct: 9   GKGVQTGNNVSH-ANNKSRRRWLPNLQETSLLSDTLGRMVRLRLSTNGIRTIEHKGGLDA 68

Query: 110 YLLKTPYHKMDTEIGLFWKAKIEKLYE 137
            LL  P  +++ +     K +I+K  E
Sbjct: 69  ALLDIPDARLNQDARRV-KKQIQKAIE 93

[Close]

BLAST of CmoCh16G012630 vs. ExPASy TrEMBL
Match: A0A6J1E6M9 (uncharacterized protein LOC111431195 OS=Cucurbita moschata OX=3662 GN=LOC111431195 PE=3 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.2e-118
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180

Query: 181 TQHDQIEEGQADRAGSSEEVAGSEGGSHGDDGPQQCVANA 221
           TQHDQIEEGQADRAGSSEEVAGSEGGSHGDDGPQQCVANA
Sbjct: 181 TQHDQIEEGQADRAGSSEEVAGSEGGSHGDDGPQQCVANA 220

[Close]

BLAST of CmoCh16G012630 vs. ExPASy TrEMBL
Match: A0A6J1HLI0 (uncharacterized protein LOC111465250 OS=Cucurbita maxima OX=3661 GN=LOC111465250 PE=3 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.7e-110
Identity = 205/211 (97.16%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VMNRAKRGIFAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKE RRRMYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSS 180

Query: 181 TQHDQIEEGQADRAGSSEEVAGSEGGSHGDD 212
           TQ DQIEEGQADR GSSEEVAGSEGGSHGDD
Sbjct: 181 TQRDQIEEGQADRVGSSEEVAGSEGGSHGDD 211

[Close]

BLAST of CmoCh16G012630 vs. ExPASy TrEMBL
Match: A0A6J1CUG4 (uncharacterized protein LOC111014872 OS=Momordica charantia OX=3673 GN=LOC111014872 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.0e-105
Identity = 198/221 (89.59%), Postives = 209/221 (94.57%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK+LKKVGE NLAPGVK+SLKKCIPDSK+VMNRAKRGIFAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKVLKKVGEINLAPGVKESLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDK GGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TEIGLFWKAKI KLYEELGQMEVVFFSPEDEAKFEQGFR+LKL+ERAARKEARR+ YGSS
Sbjct: 121 TEIGLFWKAKITKLYEELGQMEVVFFSPEDEAKFEQGFRELKLAERAARKEARRQTYGSS 180

Query: 181 TQHDQIEEGQADRAGSSEEVA-GSEGGSHGDDGPQQCVANA 221
           + HDQIEEG+ADR G+ +E A GSEGGSHGDDG QQ VANA
Sbjct: 181 SNHDQIEEGRADRHGTGKEAADGSEGGSHGDDGSQQWVANA 221

[Close]

BLAST of CmoCh16G012630 vs. ExPASy TrEMBL
Match: A0A0A0L1P8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98
Identity = 189/220 (85.91%), Postives = 202/220 (91.82%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVM RA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWK+KIE LYEELG+MEVVFFSPEDE KFEQ F++LKLSERAAR+EARR+MYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TQHDQIEEGQADRAGSSEE-VAGSEGGSHGDDGPQQCVAN 220
            + +QI+EG     GSSEE  A SEGGSHGDD  QQ VAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

[Close]

BLAST of CmoCh16G012630 vs. ExPASy TrEMBL
Match: A0A1S3BK21 (54S ribosomal protein L24, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490718 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.4e-95
Identity = 188/221 (85.07%), Postives = 200/221 (90.50%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVK+SLKK +PDSKIVM RA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWKAKIE LYEELG+MEVVFFSPEDEAKFEQ F+DLKLSERAARKEARR++YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 181 TQH-DQIEEGQADRAGSSEEVAGSEGGSHG-DDGPQQCVAN 220
           T   +QI+EG  D   SSEE A SEGGSHG DD  QQ VAN
Sbjct: 181 TNKLNQIKEGGEDTNVSSEEAASSEGGSHGDDDSHQQWVAN 221

[Close]

BLAST of CmoCh16G012630 vs. TAIR 10
Match: AT4G31460.1 (Ribosomal L28 family )

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-76
Identity = 141/208 (67.79%), Postives = 167/208 (80.29%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK++KKVG  N+ P +K+ LK C+PD+K+VM RAKRG++AGRHIQ+GNR+S
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARR--RMYG 180
           TE+GL+WK K+E  Y ELGQMEV FF+PEDEAK EQGF+DL ++++ AR+EARR  R  G
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARRTFRKKG 180

Query: 181 SSTQHDQIEEGQADRAGSSEEVAGSEGG 207
              + D  EE   +  G SE     + G
Sbjct: 181 GGNKGD--EEASIEGGGGSESHQEDDNG 206

The following BLAST results are available for this feature:

BLAST of CmoCh16G012630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36525	9.4e-12	42.05	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
A0L5U1	5.1e-10	43.66	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
A9HS05	2.6e-09	38.75	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
Q5FUP5	4.4e-09	38.75	50S ribosomal protein L28 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rp...	[more]
B6IW31	2.2e-08	37.93	50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]

BLAST of CmoCh16G012630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6M9	1.2e-118	100.00	uncharacterized protein LOC111431195 OS=Cucurbita moschata OX=3662 GN=LOC1114311...	[more]
A0A6J1HLI0	2.7e-110	97.16	uncharacterized protein LOC111465250 OS=Cucurbita maxima OX=3661 GN=LOC111465250...	[more]
A0A6J1CUG4	2.0e-105	89.59	uncharacterized protein LOC111014872 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0L1P8	1.4e-98	85.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1	[more]
A0A1S3BK21	1.4e-95	85.07	54S ribosomal protein L24, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490718...	[more]

BLAST of CmoCh16G012630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31460.1	1.1e-76	67.79	Ribosomal L28 family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037147	Ribosomal protein L28/L24 superfamily	GENE3D	2.30.170.40	Ribosomal protein L28/L24	coord: 47..118 e-value: 2.2E-21 score: 77.6
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 46..104 e-value: 4.0E-19 score: 68.5
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 1..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..220
None	No IPR available	PANTHER	PTHR13528:SF11	BNAC03G67590D PROTEIN	coord: 1..199
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 42..110 score: 14.135883
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 43..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012630.1	CmoCh16G012630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome