CmoCh16G012200 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein TORNADO 2-like
Location	Cmo_Chr16: 8744731 .. 8745818 (-)
RNA-Seq Expression	CmoCh16G012200
Synteny	CmoCh16G012200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAACCTCTCTTCACAAAACATCACCAATAGCCTCATCACAATGGCATTGAGCAACAATGTCATTGCAGCCATAAACTTCATCGCCTTGCTTCTCTCGATCCCCATCATCGGTGCCGGGATCTGGCTCGCAACGCAAGCTGACAACGCTTGTGTGCAACTTTTGCAATGGCCCGTCATCATTCTCGGCATCGTCATCCTTCTCGTGGCATTGACGGGTTTCATTGGAGCCTTTTGGAGAATCTCATGGCTTCTAATGTTCTATCTTATTGCCATGCTTGTTCTCATAATCCTACTCGGTAGCTTGGTTCTCTTTGTGTTCTCCGTCACTATGAGAGGTTCGGGTCATACCGAACCGAGCCGAGCTTACTTGGAGTATCACCTCGATGACTTCTCGCTCTGGCTCCAAAGAAGGGTTCGAAGCTCTCATAAATGGGAGAGAATTCGAACTTGTCTTAGTTCCACAACTACATGTGCCGAGTTGAACCAAAACTATAGGTTACCTCAAGATTTCTTCAACGCCCATATCAGCCCTCTCCAGGTAAAATCTTGATTTGAATTGATTTTCTACGTGCTTAAAAATACTGATAGATTCTAATGTATTTACGTATTGTTTTACTAGTCGGGGTGTTGCAAGCCACCGACAGATTGTGGGTTCACGTACGTAAACCCGACGTATTGGATTAGTCCGATAAGCAACGGAGCGAGCGTGGATTGCTCAAAATGGAGCAACGAGCAGACCGAGCTATGCTACGGGTGTGATTCGTGTAAGGCAGGGTTGCTAGCTAACCTCAAGGAAGAATGGAGAAATGCTGACCTAATTCTGCTGATTGCACTTATAGGTCTTGTTTTTGTGTATTTGATGGCATTTTTGGCTTTGAAAAATGCCAAATCTGAGAACCTTTTCCGCAGGCACAAGCAAGGTTATGTCTAACACACTCAAATAATCAACAAAAACATAACTTTTAACCTTATTGCTTTCTTTTCGGGTTTCGGGTTTGTAGAAATATTGACGTTGAAACGATTATTAGAAATATGTACGAGTATCGGGATGTATTATTTCTCATTTGAAAATATATGTTAAATTTC

mRNA sequence

AATAACCTCTCTTCACAAAACATCACCAATAGCCTCATCACAATGGCATTGAGCAACAATGTCATTGCAGCCATAAACTTCATCGCCTTGCTTCTCTCGATCCCCATCATCGGTGCCGGGATCTGGCTCGCAACGCAAGCTGACAACGCTTGTGTGCAACTTTTGCAATGGCCCGTCATCATTCTCGGCATCGTCATCCTTCTCGTGGCATTGACGGGTTTCATTGGAGCCTTTTGGAGAATCTCATGGCTTCTAATGTTCTATCTTATTGCCATGCTTGTTCTCATAATCCTACTCGGTAGCTTGGTTCTCTTTGTGTTCTCCGTCACTATGAGAGGTTCGGGTCATACCGAACCGAGCCGAGCTTACTTGGAGTATCACCTCGATGACTTCTCGCTCTGGCTCCAAAGAAGGGTTCGAAGCTCTCATAAATGGGAGAGAATTCGAACTTGTCTTAGTTCCACAACTACATGTGCCGAGTTGAACCAAAACTATAGGTTACCTCAAGATTTCTTCAACGCCCATATCAGCCCTCTCCAGTCGGGGTGTTGCAAGCCACCGACAGATTGTGGGTTCACGTACGTAAACCCGACGTATTGGATTAGTCCGATAAGCAACGGAGCGAGCGTGGATTGCTCAAAATGGAGCAACGAGCAGACCGAGCTATGCTACGGGTGTGATTCGTGTAAGGCAGGGTTGCTAGCTAACCTCAAGGAAGAATGGAGAAATGCTGACCTAATTCTGCTGATTGCACTTATAGGTCTTGTTTTTGTGTATTTGATGGCATTTTTGGCTTTGAAAAATGCCAAATCTGAGAACCTTTTCCGCAGGCACAAGCAAGGTTATGTCTAACACACTCAAATAATCAACAAAAACATAACTTTTAACCTTATTGCTTTCTTTTCGGGTTTCGGGTTTGTAGAAATATTGACGTTGAAACGATTATTAGAAATATGTACGAGTATCGGGATGTATTATTTCTCATTTGAAAATATATGTTAAATTTC

Coding sequence (CDS)

ATGGCATTGAGCAACAATGTCATTGCAGCCATAAACTTCATCGCCTTGCTTCTCTCGATCCCCATCATCGGTGCCGGGATCTGGCTCGCAACGCAAGCTGACAACGCTTGTGTGCAACTTTTGCAATGGCCCGTCATCATTCTCGGCATCGTCATCCTTCTCGTGGCATTGACGGGTTTCATTGGAGCCTTTTGGAGAATCTCATGGCTTCTAATGTTCTATCTTATTGCCATGCTTGTTCTCATAATCCTACTCGGTAGCTTGGTTCTCTTTGTGTTCTCCGTCACTATGAGAGGTTCGGGTCATACCGAACCGAGCCGAGCTTACTTGGAGTATCACCTCGATGACTTCTCGCTCTGGCTCCAAAGAAGGGTTCGAAGCTCTCATAAATGGGAGAGAATTCGAACTTGTCTTAGTTCCACAACTACATGTGCCGAGTTGAACCAAAACTATAGGTTACCTCAAGATTTCTTCAACGCCCATATCAGCCCTCTCCAGTCGGGGTGTTGCAAGCCACCGACAGATTGTGGGTTCACGTACGTAAACCCGACGTATTGGATTAGTCCGATAAGCAACGGAGCGAGCGTGGATTGCTCAAAATGGAGCAACGAGCAGACCGAGCTATGCTACGGGTGTGATTCGTGTAAGGCAGGGTTGCTAGCTAACCTCAAGGAAGAATGGAGAAATGCTGACCTAATTCTGCTGATTGCACTTATAGGTCTTGTTTTTGTGTATTTGATGGCATTTTTGGCTTTGAAAAATGCCAAATCTGAGAACCTTTTCCGCAGGCACAAGCAAGGTTATGTCTAA

Protein sequence

MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGFIGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLWLQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTYVNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIGLVFVYLMAFLALKNAKSENLFRRHKQGYV

Homology

[Close]

BLAST of CmoCh16G012200 vs. ExPASy Swiss-Prot
Match: Q9FIQ5 (Protein TORNADO 2 OS=Arabidopsis thaliana OX=3702 GN=TRN2 PE=1 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 8.5e-108
Identity = 187/268 (69.78%), Postives = 223/268 (83.21%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGF 60
           M LSNNVI  INFI +LLSIP+IGAGIWLA    N+CV+LLQWPVIILG++ILLV L GF
Sbjct: 1   MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61  IGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           IG FWRI+WLL+ YLIAML+LI+LLG LV F++ VT+RGSGH EPSRAYLEY L DFS W
Sbjct: 61  IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY 180
           L+RRV+ S+KWERIRTCLS+TT C ELNQ Y L QDFFNAH+ P+QSGCCKPPT CGFT+
Sbjct: 121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQSGCCKPPTKCGFTF 180

Query: 181 VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 240
           VNPTYWISPI   A +DC  WSN+Q  LCY CDSCKAGLLAN+K +W  AD+ LL+ALIG
Sbjct: 181 VNPTYWISPIDMSADMDCLNWSNDQNTLCYTCDSCKAGLLANIKVDWLKADIFLLLALIG 240

Query: 241 LVFVYLMAFLALKNAKSENLFRRHKQGY 269
           L+ VY++   A +NA++E++FR++KQGY
Sbjct: 241 LIIVYIIGCCAFRNAETEDIFRKYKQGY 268

[Close]

BLAST of CmoCh16G012200 vs. ExPASy Swiss-Prot
Match: Q9ZUN5 (Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.5e-75
Identity = 139/270 (51.48%), Postives = 194/270 (71.85%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGF 60
           MAL+NN+ A +N +ALL SIPI  +GIWLA++ DN CV LL+WPV++LG++IL+V+ TGF
Sbjct: 1   MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61  IGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           IGA+     LL  YL  M +LI LL  +++F F VT     +  P R Y EY L+ FS W
Sbjct: 61  IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFF-NAHISPLQSGCCKPPTDCGFT 180
           L+  V  S  W R+R CL+ T  C +LNQ +     FF ++ I+PLQSGCCKPPT CG+ 
Sbjct: 121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYN 180

Query: 181 YVNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALI 240
           +VNPT W++P +  A  DC  WSN+Q++LCY C+SCKAGLL NL++EWR A+LIL+I ++
Sbjct: 181 FVNPTLWLNPTNMAADADCYLWSNDQSQLCYNCNSCKAGLLGNLRKEWRKANLILIITVV 240

Query: 241 GLVFVYLMAFLALKNAKSENLFRRHKQGYV 270
            L++VY++A  A +NA++E+LFR++KQG+V
Sbjct: 241 VLIWVYVIACSAFRNAQTEDLFRKYKQGWV 270

[Close]

BLAST of CmoCh16G012200 vs. ExPASy Swiss-Prot
Match: Q9M1E7 (Tetraspanin-3 OS=Arabidopsis thaliana OX=3702 GN=TET3 PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.3e-60
Identity = 118/262 (45.04%), Postives = 180/262 (68.70%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNA-CVQLLQWPVIILGIVILLVALTG 60
           M  SN++I  +NF+  LLSIPI+G GIWL+++A++  C++ LQWP+I++GI I++V+L G
Sbjct: 1   MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 61  FIGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSL 120
           F GA +R  +L+  YL+ ML++I  L   ++F ++VT +GSG T  +R YL+Y+L+D+S 
Sbjct: 61  FAGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSG 120

Query: 121 WLQRRVRSSHKWERIRTCLSSTTTCAELNQNYR-LPQD---FFNAHISPLQSGCCKPPTD 180
           WL+ RV     W +I +CL  +  C ++ +N+  +P+    FF   +SP++SGCCKPPTD
Sbjct: 121 WLKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVESGCCKPPTD 180

Query: 181 CGFTYVNPTYWISPISN-GASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLIL 240
           CGF+YVN T W +     G + DC  WSN+Q+ LCY C SCKAG+L +LK+ WR   +I 
Sbjct: 181 CGFSYVNETGWDTRGGMIGPNQDCMVWSNDQSMLCYQCSSCKAGVLGSLKKSWRKVSVIN 240

Query: 241 LIALIGLVFVYLMAFLALKNAK 257
           ++ LI LV  Y++A+ A +N K
Sbjct: 241 IVVLIILVIFYVIAYAAYRNVK 262

[Close]

BLAST of CmoCh16G012200 vs. ExPASy Swiss-Prot
Match: Q9SUD4 (Tetraspanin-7 OS=Arabidopsis thaliana OX=3702 GN=TET7 PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 5.3e-57
Identity = 110/258 (42.64%), Postives = 158/258 (61.24%), Query Frame = 0


Query: 4   SNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGFIGA 63
           SNN++  +NF   LLSIPI+ AGIWL   A   C + L  P+++LGI ++ V++ G +GA
Sbjct: 5   SNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAGLVGA 64

Query: 64  FWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLWLQR 123
             R+S LL  YL AM +LI+L     +F F+VT RG+G     R Y EYH+ D+S WLQ+
Sbjct: 65  CCRVSCLLWLYLFAMFLLILLGFCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSNWLQK 124

Query: 124 RVRSSHKWERIRTCLSSTTTCAELNQNYRL--PQDFFNAHISPLQSGCCKPPTDCGFTYV 183
           RV ++  WERIR+CL  +  C+     Y     +DF+ ++++ LQSGCCKP  DC FTYV
Sbjct: 125 RVNNAKNWERIRSCLMYSDVCSTYRTRYASINVEDFYKSNLNALQSGCCKPSNDCNFTYV 184

Query: 184 NPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIGL 243
           NPT W        + DC+ W N+   LCY C++CKAGLL N+K  W+    + ++ LI L
Sbjct: 185 NPTTWTKTPGPYKNEDCNVWDNKPGTLCYDCEACKAGLLDNIKNSWKKVAKVNIVFLIFL 244

Query: 244 VFVYLMAFLALKNAKSEN 260
           + VY +   A +N +  +
Sbjct: 245 IIVYSVGCCAFRNNRKRS 262

[Close]

BLAST of CmoCh16G012200 vs. ExPASy Swiss-Prot
Match: Q8S8Q6 (Tetraspanin-8 OS=Arabidopsis thaliana OX=3702 GN=TET8 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.8e-56
Identity = 106/263 (40.30%), Postives = 162/263 (61.60%), Query Frame = 0


Query: 4   SNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGFIGA 63
           SNN++  +NF+  LLSIPI+  GIWL+ +    C + L  PVI LG+ +++VA+ G IG+
Sbjct: 5   SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAGLIGS 64

Query: 64  FWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLWLQR 123
             R++WLL  YL  M +LI+L+  + +F F VT +G+G     + Y EY L D+S WLQ+
Sbjct: 65  CCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYSTWLQK 124

Query: 124 RVRSSHKWERIRTCLSSTTTCAELNQNY-RLP-QDFFNAHISPLQSGCCKPPTDCGFTYV 183
           RV +   W +IR+CL  +  C++L   +  +P   F+  H++ LQSGCCKP  +CGF YV
Sbjct: 125 RVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQSGCCKPSDECGFEYV 184

Query: 184 NPTYWI-SPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 243
           NPT W  +      + DC  W N + +LC+ C SCKAGLL N+K  W+   ++ ++ L+ 
Sbjct: 185 NPTTWTKNTTGTHTNPDCQTWDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIVFLVF 244

Query: 244 LVFVYLMAFLALKNAKSENLFRR 264
           L+ VY +   A +N K ++ + R
Sbjct: 245 LIIVYSVGCCAFRNNKRDDSYSR 267

[Close]

BLAST of CmoCh16G012200 vs. ExPASy TrEMBL
Match: A0A6J1EBD8 (protein TORNADO 2-like OS=Cucurbita moschata OX=3662 GN=LOC111431037 PE=3 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 3.9e-148
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGF 60
           MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGF
Sbjct: 1   MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGF 60

Query: 61  IGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           IGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW
Sbjct: 61  IGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY 180
           LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY
Sbjct: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY 180

Query: 181 VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 240
           VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG
Sbjct: 181 VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 240

Query: 241 LVFVYLMAFLALKNAKSENLFRRHKQGYV 270
           LVFVYLMAFLALKNAKSENLFRRHKQGYV
Sbjct: 241 LVFVYLMAFLALKNAKSENLFRRHKQGYV 269

[Close]

BLAST of CmoCh16G012200 vs. ExPASy TrEMBL
Match: A0A6J1HK71 (protein TORNADO 2-like OS=Cucurbita maxima OX=3661 GN=LOC111465262 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 8.2e-146
Identity = 265/269 (98.51%), Postives = 267/269 (99.26%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGF 60
           MALSNNVIAAINFIALLLSIPIIGAGIW+ATQADNACVQLLQWPVI+LGIVI LVALTGF
Sbjct: 1   MALSNNVIAAINFIALLLSIPIIGAGIWIATQADNACVQLLQWPVIVLGIVIFLVALTGF 60

Query: 61  IGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           IGAFWRIS LLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW
Sbjct: 61  IGAFWRISGLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY 180
           LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY
Sbjct: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY 180

Query: 181 VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 240
           VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG
Sbjct: 181 VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 240

Query: 241 LVFVYLMAFLALKNAKSENLFRRHKQGYV 270
           LVFVYLMAFLALKNAKSENLFRRHKQGYV
Sbjct: 241 LVFVYLMAFLALKNAKSENLFRRHKQGYV 269

[Close]

BLAST of CmoCh16G012200 vs. ExPASy TrEMBL
Match: A0A1S3BL48 (protein TORNADO 2-like OS=Cucumis melo OX=3656 GN=LOC103490773 PE=3 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 9.1e-137
Identity = 240/269 (89.22%), Postives = 258/269 (95.91%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGF 60
           MALSNNVIAAINFIALLLSIP+IGAGIWLAT+ DNACVQ+LQWPVIILGIVI LVAL GF
Sbjct: 1   MALSNNVIAAINFIALLLSIPVIGAGIWLATEPDNACVQVLQWPVIILGIVIFLVALAGF 60

Query: 61  IGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           IGAFWR+SWLLMFYL+AMLVLIILLGSLV+FVFSVTMRGSGH EPSRAYLEYHLD+FSLW
Sbjct: 61  IGAFWRVSWLLMFYLVAMLVLIILLGSLVIFVFSVTMRGSGHAEPSRAYLEYHLDEFSLW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY 180
           LQRRVRSSHKWERIR CLSS+TTCAELNQNYR  QDFFNAHI+P QSGCCKPPTDCGFT+
Sbjct: 121 LQRRVRSSHKWERIRNCLSSSTTCAELNQNYRFAQDFFNAHITPFQSGCCKPPTDCGFTF 180

Query: 181 VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 240
           VNPTYWISPISNGAS+DCSKWSNEQTELCYGCDSCKAGLLANL+EEWRNAD+ILL++ +G
Sbjct: 181 VNPTYWISPISNGASMDCSKWSNEQTELCYGCDSCKAGLLANLREEWRNADIILLVSFLG 240

Query: 241 LVFVYLMAFLALKNAKSENLFRRHKQGYV 270
           L+FVYLMAF+ALKNA SE LFRRHKQGYV
Sbjct: 241 LIFVYLMAFIALKNANSEQLFRRHKQGYV 269

[Close]

BLAST of CmoCh16G012200 vs. ExPASy TrEMBL
Match: A0A0A0L3X4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009500 PE=3 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 1.2e-136
Identity = 239/269 (88.85%), Postives = 258/269 (95.91%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGF 60
           MALSNNVIAAINFIAL+LSIP+IGAGIWLAT+ DNACVQ+LQWPVIILGIVI LVAL GF
Sbjct: 1   MALSNNVIAAINFIALILSIPVIGAGIWLATEPDNACVQVLQWPVIILGIVIFLVALAGF 60

Query: 61  IGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           IGAFWR+SWLLMFYLIAMLVLIILLGSL++FVFSVTMRGSGH EPSRAYLEYHLD+FSLW
Sbjct: 61  IGAFWRVSWLLMFYLIAMLVLIILLGSLIIFVFSVTMRGSGHAEPSRAYLEYHLDEFSLW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY 180
           LQRRVRSSHKWERIR CLSS+TTCAELNQNYR  QDFFNAHI+P QSGCCKPPTDCGFT+
Sbjct: 121 LQRRVRSSHKWERIRNCLSSSTTCAELNQNYRFAQDFFNAHITPFQSGCCKPPTDCGFTF 180

Query: 181 VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 240
           VNPTYWISPISNGAS+DCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNAD+ILL++ +G
Sbjct: 181 VNPTYWISPISNGASMDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADIILLVSFVG 240

Query: 241 LVFVYLMAFLALKNAKSENLFRRHKQGYV 270
           L+FVYL+AF+ALKNA SE LFRRHKQGYV
Sbjct: 241 LIFVYLLAFIALKNANSEQLFRRHKQGYV 269

[Close]

BLAST of CmoCh16G012200 vs. ExPASy TrEMBL
Match: A0A6A1VSR2 (Protein TORNADO 2 OS=Morella rubra OX=262757 GN=CJ030_MR4G023626 PE=3 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 6.8e-116
Identity = 202/269 (75.09%), Postives = 241/269 (89.59%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGF 60
           MALSNNVI AINF+A+LLSIPIIGAGIWLAT+ DN+CV++LQWPVIILGI+ILLVAL GF
Sbjct: 1   MALSNNVIGAINFVAMLLSIPIIGAGIWLATEPDNSCVKILQWPVIILGILILLVALAGF 60

Query: 61  IGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           +G FWRI WLL+FYL+AML+LIILL  LV+F + VT++GSGH EPSRAYLEYHLDDFS W
Sbjct: 61  VGGFWRIPWLLIFYLVAMLILIILLACLVVFTYMVTIKGSGHLEPSRAYLEYHLDDFSGW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY 180
           L+RRV+SS+KW+RIR CLSSTT CAELNQ+YR+  DFFNAHI+PLQSGCCKPPT CG+T+
Sbjct: 121 LRRRVQSSYKWDRIRNCLSSTTMCAELNQSYRMALDFFNAHITPLQSGCCKPPTACGYTF 180

Query: 181 VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 240
           VNPTYWISPI+N A +DC +WSNEQT+LCY CDSCKAGLLANLK+EWR AD+IL+I L+ 
Sbjct: 181 VNPTYWISPINNAADMDCLQWSNEQTQLCYNCDSCKAGLLANLKKEWRRADIILVITLVA 240

Query: 241 LVFVYLMAFLALKNAKSENLFRRHKQGYV 270
           L+ VYL+   A +NAK+E+LFR++KQGYV
Sbjct: 241 LICVYLIGCCAFRNAKTEDLFRKYKQGYV 269

[Close]

BLAST of CmoCh16G012200 vs. TAIR 10
Match: AT5G46700.1 (Tetraspanin family protein )

HSP 1 Score: 391.3 bits (1004), Expect = 6.1e-109
Identity = 187/268 (69.78%), Postives = 223/268 (83.21%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGF 60
           M LSNNVI  INFI +LLSIP+IGAGIWLA    N+CV+LLQWPVIILG++ILLV L GF
Sbjct: 1   MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61  IGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           IG FWRI+WLL+ YLIAML+LI+LLG LV F++ VT+RGSGH EPSRAYLEY L DFS W
Sbjct: 61  IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY 180
           L+RRV+ S+KWERIRTCLS+TT C ELNQ Y L QDFFNAH+ P+QSGCCKPPT CGFT+
Sbjct: 121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQSGCCKPPTKCGFTF 180

Query: 181 VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 240
           VNPTYWISPI   A +DC  WSN+Q  LCY CDSCKAGLLAN+K +W  AD+ LL+ALIG
Sbjct: 181 VNPTYWISPIDMSADMDCLNWSNDQNTLCYTCDSCKAGLLANIKVDWLKADIFLLLALIG 240

Query: 241 LVFVYLMAFLALKNAKSENLFRRHKQGY 269
           L+ VY++   A +NA++E++FR++KQGY
Sbjct: 241 LIIVYIIGCCAFRNAETEDIFRKYKQGY 268

[Close]

BLAST of CmoCh16G012200 vs. TAIR 10
Match: AT2G19580.1 (tetraspanin2 )

HSP 1 Score: 284.3 bits (726), Expect = 1.0e-76
Identity = 139/270 (51.48%), Postives = 194/270 (71.85%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGF 60
           MAL+NN+ A +N +ALL SIPI  +GIWLA++ DN CV LL+WPV++LG++IL+V+ TGF
Sbjct: 1   MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61  IGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           IGA+     LL  YL  M +LI LL  +++F F VT     +  P R Y EY L+ FS W
Sbjct: 61  IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFF-NAHISPLQSGCCKPPTDCGFT 180
           L+  V  S  W R+R CL+ T  C +LNQ +     FF ++ I+PLQSGCCKPPT CG+ 
Sbjct: 121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYN 180

Query: 181 YVNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALI 240
           +VNPT W++P +  A  DC  WSN+Q++LCY C+SCKAGLL NL++EWR A+LIL+I ++
Sbjct: 181 FVNPTLWLNPTNMAADADCYLWSNDQSQLCYNCNSCKAGLLGNLRKEWRKANLILIITVV 240

Query: 241 GLVFVYLMAFLALKNAKSENLFRRHKQGYV 270
            L++VY++A  A +NA++E+LFR++KQG+V
Sbjct: 241 VLIWVYVIACSAFRNAQTEDLFRKYKQGWV 270

[Close]

BLAST of CmoCh16G012200 vs. TAIR 10
Match: AT3G45600.1 (tetraspanin3 )

HSP 1 Score: 234.6 bits (597), Expect = 9.5e-62
Identity = 118/262 (45.04%), Postives = 180/262 (68.70%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWLATQADNA-CVQLLQWPVIILGIVILLVALTG 60
           M  SN++I  +NF+  LLSIPI+G GIWL+++A++  C++ LQWP+I++GI I++V+L G
Sbjct: 1   MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 61  FIGAFWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSL 120
           F GA +R  +L+  YL+ ML++I  L   ++F ++VT +GSG T  +R YL+Y+L+D+S 
Sbjct: 61  FAGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSG 120

Query: 121 WLQRRVRSSHKWERIRTCLSSTTTCAELNQNYR-LPQD---FFNAHISPLQSGCCKPPTD 180
           WL+ RV     W +I +CL  +  C ++ +N+  +P+    FF   +SP++SGCCKPPTD
Sbjct: 121 WLKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVESGCCKPPTD 180

Query: 181 CGFTYVNPTYWISPISN-GASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLIL 240
           CGF+YVN T W +     G + DC  WSN+Q+ LCY C SCKAG+L +LK+ WR   +I 
Sbjct: 181 CGFSYVNETGWDTRGGMIGPNQDCMVWSNDQSMLCYQCSSCKAGVLGSLKKSWRKVSVIN 240

Query: 241 LIALIGLVFVYLMAFLALKNAK 257
           ++ LI LV  Y++A+ A +N K
Sbjct: 241 IVVLIILVIFYVIAYAAYRNVK 262

[Close]

BLAST of CmoCh16G012200 vs. TAIR 10
Match: AT4G28050.1 (tetraspanin7 )

HSP 1 Score: 222.6 bits (566), Expect = 3.7e-58
Identity = 110/258 (42.64%), Postives = 158/258 (61.24%), Query Frame = 0


Query: 4   SNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGFIGA 63
           SNN++  +NF   LLSIPI+ AGIWL   A   C + L  P+++LGI ++ V++ G +GA
Sbjct: 5   SNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAGLVGA 64

Query: 64  FWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLWLQR 123
             R+S LL  YL AM +LI+L     +F F+VT RG+G     R Y EYH+ D+S WLQ+
Sbjct: 65  CCRVSCLLWLYLFAMFLLILLGFCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSNWLQK 124

Query: 124 RVRSSHKWERIRTCLSSTTTCAELNQNYRL--PQDFFNAHISPLQSGCCKPPTDCGFTYV 183
           RV ++  WERIR+CL  +  C+     Y     +DF+ ++++ LQSGCCKP  DC FTYV
Sbjct: 125 RVNNAKNWERIRSCLMYSDVCSTYRTRYASINVEDFYKSNLNALQSGCCKPSNDCNFTYV 184

Query: 184 NPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIGL 243
           NPT W        + DC+ W N+   LCY C++CKAGLL N+K  W+    + ++ LI L
Sbjct: 185 NPTTWTKTPGPYKNEDCNVWDNKPGTLCYDCEACKAGLLDNIKNSWKKVAKVNIVFLIFL 244

Query: 244 VFVYLMAFLALKNAKSEN 260
           + VY +   A +N +  +
Sbjct: 245 IIVYSVGCCAFRNNRKRS 262

[Close]

BLAST of CmoCh16G012200 vs. TAIR 10
Match: AT2G23810.1 (tetraspanin8 )

HSP 1 Score: 219.2 bits (557), Expect = 4.1e-57
Identity = 106/263 (40.30%), Postives = 162/263 (61.60%), Query Frame = 0


Query: 4   SNNVIAAINFIALLLSIPIIGAGIWLATQADNACVQLLQWPVIILGIVILLVALTGFIGA 63
           SNN++  +NF+  LLSIPI+  GIWL+ +    C + L  PVI LG+ +++VA+ G IG+
Sbjct: 5   SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAGLIGS 64

Query: 64  FWRISWLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLWLQR 123
             R++WLL  YL  M +LI+L+  + +F F VT +G+G     + Y EY L D+S WLQ+
Sbjct: 65  CCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYSTWLQK 124

Query: 124 RVRSSHKWERIRTCLSSTTTCAELNQNY-RLP-QDFFNAHISPLQSGCCKPPTDCGFTYV 183
           RV +   W +IR+CL  +  C++L   +  +P   F+  H++ LQSGCCKP  +CGF YV
Sbjct: 125 RVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQSGCCKPSDECGFEYV 184

Query: 184 NPTYWI-SPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 243
           NPT W  +      + DC  W N + +LC+ C SCKAGLL N+K  W+   ++ ++ L+ 
Sbjct: 185 NPTTWTKNTTGTHTNPDCQTWDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIVFLVF 244

Query: 244 LVFVYLMAFLALKNAKSENLFRR 264
           L+ VY +   A +N K ++ + R
Sbjct: 245 LIIVYSVGCCAFRNNKRDDSYSR 267

The following BLAST results are available for this feature:

BLAST of CmoCh16G012200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIQ5	8.5e-108	69.78	Protein TORNADO 2 OS=Arabidopsis thaliana OX=3702 GN=TRN2 PE=1 SV=1	[more]
Q9ZUN5	1.5e-75	51.48	Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1	[more]
Q9M1E7	1.3e-60	45.04	Tetraspanin-3 OS=Arabidopsis thaliana OX=3702 GN=TET3 PE=1 SV=1	[more]
Q9SUD4	5.3e-57	42.64	Tetraspanin-7 OS=Arabidopsis thaliana OX=3702 GN=TET7 PE=2 SV=1	[more]
Q8S8Q6	5.8e-56	40.30	Tetraspanin-8 OS=Arabidopsis thaliana OX=3702 GN=TET8 PE=2 SV=1	[more]

BLAST of CmoCh16G012200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EBD8	3.9e-148	100.00	protein TORNADO 2-like OS=Cucurbita moschata OX=3662 GN=LOC111431037 PE=3 SV=1	[more]
A0A6J1HK71	8.2e-146	98.51	protein TORNADO 2-like OS=Cucurbita maxima OX=3661 GN=LOC111465262 PE=4 SV=1	[more]
A0A1S3BL48	9.1e-137	89.22	protein TORNADO 2-like OS=Cucumis melo OX=3656 GN=LOC103490773 PE=3 SV=1	[more]
A0A0A0L3X4	1.2e-136	88.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009500 PE=3 SV=1	[more]
A0A6A1VSR2	6.8e-116	75.09	Protein TORNADO 2 OS=Morella rubra OX=262757 GN=CJ030_MR4G023626 PE=3 SV=1	[more]

BLAST of CmoCh16G012200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46700.1	6.1e-109	69.78	Tetraspanin family protein	[more]
AT2G19580.1	1.0e-76	51.48	tetraspanin2	[more]
AT3G45600.1	9.5e-62	45.04	tetraspanin3	[more]
AT4G28050.1	3.7e-58	42.64	tetraspanin7	[more]
AT2G23810.1	4.1e-57	40.30	tetraspanin8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00259	TMFOUR	coord: 6..29 score: 25.35 coord: 38..64 score: 25.69 coord: 65..93 score: 15.19
None	No IPR available	PANTHER	PTHR32191:SF14	PROTEIN TORNADO 2	coord: 1..267
IPR018499	Tetraspanin/Peripherin	PFAM	PF00335	Tetraspanin	coord: 7..248 e-value: 1.7E-26 score: 93.3
IPR044991	Tetraspani, plant	PANTHER	PTHR32191	TETRASPANIN-8-RELATED	coord: 1..267

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012200.1	CmoCh16G012200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0010305	leaf vascular tissue pattern formation
biological_process	GO:0009554	megasporogenesis
biological_process	GO:0009956	radial pattern formation
biological_process	GO:0009934	regulation of meristem structural organization
biological_process	GO:0010015	root morphogenesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma