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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGAATCATGCAATGCAATACCTTGTTTTCTTTGCTTTGTTGGGTTTTGGGTTAGCTTCTGCAGCCAGAACCCTTGTTGCCTATGATGCCAATGTCCAAGTCCCAGTGTTAGGCCGCGTTTCTGTTGGATATGGTGGTGGAGAGGGTGGTGGTAGCGGGTATGGAGTTACCACTGGATATGCCGGTGGTGGTGGTGGGGGAGGACGCGGAGGTGGAGGTGGCTCTGGATATGGAGGTGTTGGATATGGAAATGGTGGAGGTGAAGGAAGTGGCGCTGGATATGGAGGTGGAGAAGATCGTGGTTATGGCAATGGTGGTGGTGGTGGTGGAGGAAGTGGAGGTGGTAGCGGTGGTGGTTATGGCCCCGGTGGTGGATATGGAAGTGGAGGGGGAGCTGGGTCAGGTGGTGGTTATGGTAGTGGGGGAGTAGGTTATGGAGGAGGAGGAGGTGGGGGAAGTGGAGGCGGTGGTGGTTATGGTGCCGGAGGAGCAAATGGCGGTGGATATGGAAGTGGCGGAGGACAAGGAGGCGGCTCAGGGAGCGGTGCAGGAGGGCATGGAGGTGGCGGAGGAGGCGGTTCCGGTGGTGGGTATGGTGGTGGAGGAGCAAATGGAGGTGGATACGGAAGTGGCGGAGGAGGAGGCGGCGGCTCAGGAAGTGGAGCAGGAGGGCATGGAGGTGGAGGCGGTGGTGGCTCCGGTGGCGGCTATGGTGGTGGAGGTGCACAAGGAGGTGGATATGGAGCTGGCGGAGGTAGCGGACAAGGCGGAGGACATGGTGGTGGGTATGCACCATGA mRNA sequence ATGGAGAATCATGCAATGCAATACCTTGTTTTCTTTGCTTTGTTGGGTTTTGGGTTAGCTTCTGCAGCCAGAACCCTTGTTGCCTATGATGCCAATGTCCAAGTCCCAGTGTTAGGCCGCGTTTCTGTTGGATATGGTGGTGGAGAGGGTGGTGGTAGCGGGTATGGAGTTACCACTGGATATGCCGGTGGTGGTGGTGGGGGAGGACGCGGAGGTGGAGGTGGCTCTGGATATGGAGGTGTTGGATATGGAAATGGTGGAGGTGAAGGAAGTGGCGCTGGATATGGAGGTGGAGAAGATCGTGGTTATGGCAATGGTGGTGGTGGTGGTGGAGGAAGTGGAGGTGGTAGCGGTGGTGGTTATGGCCCCGGTGGTGGATATGGAAGTGGAGGGGGAGCTGGGTCAGGTGGTGGTTATGGTAGTGGGGGAGTAGGTTATGGAGGAGGAGGAGGTGGGGGAAGTGGAGGCGGTGGTGGTTATGGTGCCGGAGGAGCAAATGGCGGTGGATATGGAAGTGGCGGAGGACAAGGAGGCGGCTCAGGGAGCGGTGCAGGAGGGCATGGAGGTGGCGGAGGAGGCGGTTCCGGTGGTGGGTATGGTGGTGGAGGAGCAAATGGAGGTGGATACGGAAGTGGCGGAGGAGGAGGCGGCGGCTCAGGAAGTGGAGCAGGAGGGCATGGAGGTGGAGGCGGTGGTGGCTCCGGTGGCGGCTATGGTGGTGGAGGTGCACAAGGAGGTGGATATGGAGCTGGCGGAGGTAGCGGACAAGGCGGAGGACATGGTGGTGGGTATGCACCATGA Coding sequence (CDS) ATGGAGAATCATGCAATGCAATACCTTGTTTTCTTTGCTTTGTTGGGTTTTGGGTTAGCTTCTGCAGCCAGAACCCTTGTTGCCTATGATGCCAATGTCCAAGTCCCAGTGTTAGGCCGCGTTTCTGTTGGATATGGTGGTGGAGAGGGTGGTGGTAGCGGGTATGGAGTTACCACTGGATATGCCGGTGGTGGTGGTGGGGGAGGACGCGGAGGTGGAGGTGGCTCTGGATATGGAGGTGTTGGATATGGAAATGGTGGAGGTGAAGGAAGTGGCGCTGGATATGGAGGTGGAGAAGATCGTGGTTATGGCAATGGTGGTGGTGGTGGTGGAGGAAGTGGAGGTGGTAGCGGTGGTGGTTATGGCCCCGGTGGTGGATATGGAAGTGGAGGGGGAGCTGGGTCAGGTGGTGGTTATGGTAGTGGGGGAGTAGGTTATGGAGGAGGAGGAGGTGGGGGAAGTGGAGGCGGTGGTGGTTATGGTGCCGGAGGAGCAAATGGCGGTGGATATGGAAGTGGCGGAGGACAAGGAGGCGGCTCAGGGAGCGGTGCAGGAGGGCATGGAGGTGGCGGAGGAGGCGGTTCCGGTGGTGGGTATGGTGGTGGAGGAGCAAATGGAGGTGGATACGGAAGTGGCGGAGGAGGAGGCGGCGGCTCAGGAAGTGGAGCAGGAGGGCATGGAGGTGGAGGCGGTGGTGGCTCCGGTGGCGGCTATGGTGGTGGAGGTGCACAAGGAGGTGGATATGGAGCTGGCGGAGGTAGCGGACAAGGCGGAGGACATGGTGGTGGGTATGCACCATGA Protein sequence MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTGYAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGGYGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGQGGGSGSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGGGGAQGGGYGAGGGSGQGGGHGGGYAP
Homology
BLAST of CmoCh16G012110 vs. ExPASy TrEMBL
Match: A0A6J1E5Z3 (glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431102 PE=4 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 5.7e-75 Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0 Query: 1 MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60 MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG Sbjct: 1 MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60
Query: 61 YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120 YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG Sbjct: 61 YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120
Query: 121 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGQGGGS 180 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGQGGGS Sbjct: 121 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGQGGGS 180
Query: 181 GSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGG 240 GSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGG Sbjct: 181 GSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGG 240
Query: 241 GGAQGGGYGAGGGSGQGGGHGGGYAP 267 GGAQGGGYGAGGGSGQGGGHGGGYAP Sbjct: 241 GGAQGGGYGAGGGSGQGGGHGGGYAP 266
BLAST of CmoCh16G012110 vs. ExPASy TrEMBL
Match: A0A6J1L823 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 GN=LOC111500160 PE=4 SV=1) HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66 Identity = 257/272 (94.49%), Postives = 260/272 (95.59%), Query Frame = 0 Query: 1 MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60 MENHA++YLVFFALLGFGLASAARTLVAYDANVQVPVLGRVS+GYGGGEGGGSGYGVT G Sbjct: 13 MENHAIEYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSIGYGGGEGGGSGYGVTAG 72
Query: 61 YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120 YA GGGGGGRGGGGGS YGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG Sbjct: 73 YA-GGGGGGRGGGGGSAYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 132
Query: 121 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGAN------GGGYGSGG 180 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGAN GGGYGSGG Sbjct: 133 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGYGSGG 192
Query: 181 GQGGGSGSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGGGGS 240 GQGG SGSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGG GGGSGSGAGGHGGG GGGS Sbjct: 193 GQGGSSGSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGEGGGSGSGAGGHGGGVGGGS 252
Query: 241 GGGYGGGGAQGGGYGAGGGSGQGGGHGGGYAP 267 GGGYGGGGAQGGGYGAGGGSGQGGGHGGGYAP Sbjct: 253 GGGYGGGGAQGGGYGAGGGSGQGGGHGGGYAP 283
BLAST of CmoCh16G012110 vs. ExPASy TrEMBL
Match: A0A6J1E9J4 (glycine-rich cell wall structural protein 1.8-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431102 PE=4 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 3.0e-63 Identity = 233/266 (87.59%), Postives = 233/266 (87.59%), Query Frame = 0 Query: 1 MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60 MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG Sbjct: 1 MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60
Query: 61 YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120 YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG Sbjct: 61 YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120
Query: 121 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGQGGGS 180 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGS Sbjct: 121 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGS-------- 180
Query: 181 GSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGG 240 GGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGG Sbjct: 181 -------------------------GGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGG 233
Query: 241 GGAQGGGYGAGGGSGQGGGHGGGYAP 267 GGAQGGGYGAGGGSGQGGGHGGGYAP Sbjct: 241 GGAQGGGYGAGGGSGQGGGHGGGYAP 233
BLAST of CmoCh16G012110 vs. ExPASy TrEMBL
Match: A0A0A0L3Y5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011080 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 1.6e-40 Identity = 224/276 (81.16%), Postives = 231/276 (83.70%), Query Frame = 0 Query: 1 MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60 MENH +Q+L FALLG GLASAARTL+AYD +V PVLG SVGYGGGEG GSGYGV+ G Sbjct: 1 MENHRVQFLALFALLGLGLASAARTLIAYDGDVHAPVLGHTSVGYGGGEGAGSGYGVSVG 60
Query: 61 YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120 Y GGGGGGGRGGGGGS GGVGYGNGGGEGSGAGYGGGE+RGYGNGGGGGGG GG GGG Sbjct: 61 Y-GGGGGGGRGGGGGSTNGGVGYGNGGGEGSGAGYGGGEERGYGNGGGGGGGGSGGGGGG 120
Query: 121 -----YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGG----SGGGGGYGAGGANGGGYG 180 YGP GGYGSG G GSGGGYG GG GYGGGGGGG GG GGYGAG A+GGGYG Sbjct: 121 GSGVRYGPVGGYGSGEGGGSGGGYGGGGSGYGGGGGGGGGGNGGGSGGYGAGEASGGGYG 180
Query: 181 SGGGQGGGSGSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGG 240 SGGGQGGGSGSG GGHGGGGGGG GGGYG GG NGGGYGSGGG GGGSGSGAGGHGGGGG Sbjct: 181 SGGGQGGGSGSGGGGHGGGGGGGWGGGYGSGG-NGGGYGSGGGEGGGSGSGAGGHGGGGG 240
Query: 241 GGSGGGY-GGGGAQGGGYGAGGGSGQGGGHGGGYAP 267 GGSGGGY GGGGAQGGGYG GGGS GG GGGYAP Sbjct: 241 GGSGGGYGGGGGAQGGGYGGGGGS---GGGGGGYAP 271
BLAST of CmoCh16G012110 vs. ExPASy TrEMBL
Match: A0A1S4DY03 (glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LOC103490777 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 6.0e-24 Identity = 168/220 (76.36%), Postives = 179/220 (81.36%), Query Frame = 0 Query: 1 MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60 MENH +Q+L FALLG GLASAARTL+AYD +V+VPVLG SVGYGGGEGGGSGYG++ G Sbjct: 1 MENHRVQFLALFALLGLGLASAARTLIAYDGDVRVPVLGHTSVGYGGGEGGGSGYGLSLG 60
Query: 61 YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120 Y GGGGGGG GGGGGS GG GYGNGGGEGSG+GYGG GGGGG G GGG G G Sbjct: 61 Y-GGGGGGGHGGGGGSTNGG-GYGNGGGEGSGSGYGG--------GGGGGNGGGGGYGAG 120
Query: 121 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGQGGGS 180 GGGYGSGG G GGG GSGG G+GGGGGG G GGGYG+GG NGGGYGSGGG+GGGS Sbjct: 121 AASGGGYGSGG--GQGGGSGSGGGGHGGGGGG--GWGGGYGSGG-NGGGYGSGGGEGGGS 180
Query: 181 GSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSG 221 GSGAGGHGGGGGGGSGGGYGGGGA GGGYG GGG GGG G Sbjct: 181 GSGAGGHGGGGGGGSGGGYGGGGAQGGGYGGGGGSGGGGG 205
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1E5Z3 | 5.7e-75 | 100.00 | glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita mosch... | [more] |
A0A6J1L823 | 1.7e-66 | 94.49 | glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 G... | [more] |
A0A6J1E9J4 | 3.0e-63 | 87.59 | glycine-rich cell wall structural protein 1.8-like isoform X2 OS=Cucurbita mosch... | [more] |
A0A0A0L3Y5 | 1.6e-40 | 81.16 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011080 PE=4 SV=1 | [more] |
A0A1S4DY03 | 6.0e-24 | 76.36 | glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LO... | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | PRINTS | PR01228 | EGGSHELL | coord: 4..20 score: 29.41 coord: 107..122 score: 63.28 coord: 157..175 score: 40.13 coord: 132..142 score: 29.55 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 215..236 |
Relationships
The following mRNA feature(s) are a part of this gene:
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