CmoCh16G012020 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012020
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	AT-hook motif nuclear-localized protein
Location	Cmo_Chr16: 8602724 .. 8603500 (+)
RNA-Seq Expression	CmoCh16G012020
Synteny	CmoCh16G012020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGGTTGGATTTAGGAAGCCGATATCTAAATCACCTTCAAACGGGTGTAGATGATCCACTAAATCGCGGTGGTCATTTCTCCTCCGGCGACCACGACGACGACGACGATCCCCACCAAACCCTAGGTGGTCCGGGAGATGTGGTTGGCCGCCGCCCACGCGGCCGGCCACCAGGTTCCAAAAACAAGCCAAAGCCGCCAGTAATCATCACCCGAGAGAGCGCCAACACACTACGTGTCCACATCTTAGAGGTTGGCAGCGGCTGCGACATCTTTGATTGCATCGCCGCCTATGCTCGCCGGCGGCAGCGTGGGATCTGTATTCTGAGCGGTAGTGGAAACGTCACCAACGTCGGCCTCCGTCAGCCAGCGTCGGCAGGGGCGGTGCTAACACTTCAAGGGAGGTTTGAGATTTTGTCACTCTCCGGATCGTTTCTTCCGCCGCCTGCTCCACCGGGTGCCACTAGTTTGACAATATTTCTCGCCGGAGGACAAGGGCAGGTGGTGGGAGGAACGGTGGCCGGAGAATTAACGGCGGCAGGGCCAGTGATTTTGATTGCAGCTTCTTTTACTAATGTGGCGTATGAAAGATTACCACTTGATGAGGAGGATCAGCAGCAAGCTCCGACAGGCAGCGGCGGAGGTGGCGGCGGCAGCGGTGGCGGAGTGGGTAACAACAACAACAATAACCCATTTCAAGACCCATCAAATTCAGGCCTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAACTTCCACCCTTTTGA

mRNA sequence

ATGGCTGGGTTGGATTTAGGAAGCCGATATCTAAATCACCTTCAAACGGGTGTAGATGATCCACTAAATCGCGGTGGTCATTTCTCCTCCGGCGACCACGACGACGACGACGATCCCCACCAAACCCTAGGTGGTCCGGGAGATGTGGTTGGCCGCCGCCCACGCGGCCGGCCACCAGGTTCCAAAAACAAGCCAAAGCCGCCAGTAATCATCACCCGAGAGAGCGCCAACACACTACGTGTCCACATCTTAGAGGTTGGCAGCGGCTGCGACATCTTTGATTGCATCGCCGCCTATGCTCGCCGGCGGCAGCGTGGGATCTGTATTCTGAGCGGTAGTGGAAACGTCACCAACGTCGGCCTCCGTCAGCCAGCGTCGGCAGGGGCGGTGCTAACACTTCAAGGGAGGTTTGAGATTTTGTCACTCTCCGGATCGTTTCTTCCGCCGCCTGCTCCACCGGGTGCCACTAGTTTGACAATATTTCTCGCCGGAGGACAAGGGCAGGTGGTGGGAGGAACGGTGGCCGGAGAATTAACGGCGGCAGGGCCAGTGATTTTGATTGCAGCTTCTTTTACTAATGTGGCGTATGAAAGATTACCACTTGATGAGGAGGATCAGCAGCAAGCTCCGACAGGCAGCGGCGGAGGTGGCGGCGGCAGCGGTGGCGGAGTGGGTAACAACAACAACAATAACCCATTTCAAGACCCATCAAATTCAGGCCTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAACTTCCACCCTTTTGA

Coding sequence (CDS)

ATGGCTGGGTTGGATTTAGGAAGCCGATATCTAAATCACCTTCAAACGGGTGTAGATGATCCACTAAATCGCGGTGGTCATTTCTCCTCCGGCGACCACGACGACGACGACGATCCCCACCAAACCCTAGGTGGTCCGGGAGATGTGGTTGGCCGCCGCCCACGCGGCCGGCCACCAGGTTCCAAAAACAAGCCAAAGCCGCCAGTAATCATCACCCGAGAGAGCGCCAACACACTACGTGTCCACATCTTAGAGGTTGGCAGCGGCTGCGACATCTTTGATTGCATCGCCGCCTATGCTCGCCGGCGGCAGCGTGGGATCTGTATTCTGAGCGGTAGTGGAAACGTCACCAACGTCGGCCTCCGTCAGCCAGCGTCGGCAGGGGCGGTGCTAACACTTCAAGGGAGGTTTGAGATTTTGTCACTCTCCGGATCGTTTCTTCCGCCGCCTGCTCCACCGGGTGCCACTAGTTTGACAATATTTCTCGCCGGAGGACAAGGGCAGGTGGTGGGAGGAACGGTGGCCGGAGAATTAACGGCGGCAGGGCCAGTGATTTTGATTGCAGCTTCTTTTACTAATGTGGCGTATGAAAGATTACCACTTGATGAGGAGGATCAGCAGCAAGCTCCGACAGGCAGCGGCGGAGGTGGCGGCGGCAGCGGTGGCGGAGTGGGTAACAACAACAACAATAACCCATTTCAAGACCCATCAAATTCAGGCCTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAACTTCCACCCTTTTGA

Protein sequence

MAGLDLGSRYLNHLQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVGLRQPASAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGGGGSGGGVGNNNNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF

Homology

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BLAST of CmoCh16G012020 vs. ExPASy Swiss-Prot
Match: O23620 (AT-hook motif nuclear-localized protein 23 OS=Arabidopsis thaliana OX=3702 GN=AHL23 PE=1 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.4e-86
Identity = 187/291 (64.26%), Postives = 213/291 (73.20%), Query Frame = 0


Query: 1   MAGLDLGS--RYLNHL---------QTGVDDPLNRG---GHFSSGDHDDDDDPHQTL--- 60
           MAGLDLG+  RY+NH               D +  G   GHF+  D D++++ HQ L   
Sbjct: 1   MAGLDLGTAFRYVNHQLHRPDLHLHHNSSSDDVTPGAGMGHFTVDDEDNNNN-HQGLDLA 60

Query: 61  --------------GGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSG 120
                         GG GDVVGRRPRGRPPGSKNKPKPPVIITRESANTLR HILEV +G
Sbjct: 61  SGGGSGSSGGGGGHGGGGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVTNG 120

Query: 121 CDIFDCIAAYARRRQRGICILSGSGNVTNVGLRQPASAGAVLTLQGRFEILSLSGSFLPP 180
           CD+FDC+A YARRRQRGIC+LSGSG VTNV +RQP++AGAV+TLQG FEILSLSGSFLPP
Sbjct: 121 CDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPSAAGAVVTLQGTFEILSLSGSFLPP 180

Query: 181 PAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQA 240
           PAPPGATSLTIFLAGGQGQVVGG+V GELTAAGPVI+IAASFTNVAYERLPL+E++QQQ 
Sbjct: 181 PAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEDEQQQQ 240

Query: 241 PTGSGGGGGGSGGGVGNNNNNNPFQDPS---NSGLPFLNLPLHMQ-NVQLP 257
                 GGG +GGG       N F + +     GLPF NLP++MQ NVQLP
Sbjct: 241 L-----GGGSNGGG-------NLFPEVAAGGGGGLPFFNLPMNMQPNVQLP 278

[Close]

BLAST of CmoCh16G012020 vs. ExPASy Swiss-Prot
Match: O82166 (AT-hook motif nuclear-localized protein 21 OS=Arabidopsis thaliana OX=3702 GN=AHL21 PE=2 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.0e-78
Identity = 169/289 (58.48%), Postives = 197/289 (68.17%), Query Frame = 0


Query: 1   MAGLDLG--SRYLNHLQTGVDDPLNRGGHFSSGDHDDDD--------------DPHQTL- 60
           MAGLDLG  SRY++++  G       GG F++ +H +DD              + HQ L 
Sbjct: 1   MAGLDLGTTSRYVHNVDGG------GGGQFTTDNHHEDDGGAGGNHHHHHHNHNHHQGLD 60

Query: 61  ---------------GGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGS 120
                          GG GD+V RRPRGRP GSKNKPKPPVI+TRESANTLR HILEVGS
Sbjct: 61  LIASNDNSGLGGGGGGGSGDLVMRRPRGRPAGSKNKPKPPVIVTRESANTLRAHILEVGS 120

Query: 121 GCDIFDCIAAYARRRQRGICILSGSGNVTNVGLRQPASAGAVLTLQGRFEILSLSGSFLP 180
           GCD+F+CI+ YARRRQRGIC+LSG+G VTNV +RQP +AGAV+TL+G FEILSLSGSFLP
Sbjct: 121 GCDVFECISTYARRRQRGICVLSGTGTVTNVSIRQPTAAGAVVTLRGTFEILSLSGSFLP 180

Query: 181 PPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQ 240
           PPAPPGATSLTIFLAG QGQVVGG V GEL AAGPV+++AASFTNVAYERLPLDE ++  
Sbjct: 181 PPAPPGATSLTIFLAGAQGQVVGGNVVGELMAAGPVMVMAASFTNVAYERLPLDEHEEHL 240

Query: 241 APTGSGGGGG----GSGGGVGNNNNNNPFQDPSNSGLPFLNLPLHMQNV 254
              G GGGG      +GGG                GLPF NLP+ M  +
Sbjct: 241 QSGGGGGGGNMYSEATGGG---------------GGLPFFNLPMSMPQI 268

[Close]

BLAST of CmoCh16G012020 vs. ExPASy Swiss-Prot
Match: Q9SZ70 (AT-hook motif nuclear-localized protein 26 OS=Arabidopsis thaliana OX=3702 GN=AHL26 PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.6e-66
Identity = 135/219 (61.64%), Postives = 168/219 (76.71%), Query Frame = 0


Query: 44  GGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRR 103
           GG G+ + RRPRGRP GSKNKPK P+IITR+SAN LR H++E+G GCDI DC+A +ARRR
Sbjct: 110 GGSGEQMTRRPRGRPAGSKNKPKAPIIITRDSANALRTHVMEIGDGCDIVDCMATFARRR 169

Query: 104 QRGICILSGSGNVTNVGLRQPAS-AGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFL 163
           QRG+C++SG+G+VTNV +RQP S  G+V++L GRFEILSLSGSFLPPPAPP AT L+++L
Sbjct: 170 QRGVCVMSGTGSVTNVTIRQPGSPPGSVVSLHGRFEILSLSGSFLPPPAPPAATGLSVYL 229

Query: 164 AGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGGGGSGG 223
           AGGQGQVVGG+V G L  +GPV+++AASF+N AYERLPL EED+ Q P   GGGGGG GG
Sbjct: 230 AGGQGQVVGGSVVGPLLCSGPVVVMAASFSNAAYERLPL-EEDEMQTPVQGGGGGGGGGG 289

Query: 224 GVGNNNNNNPFQD----PSNSGLPFLNLPLHMQNVQLPP 258
           G+G+       Q      +  GLP    P  + +VQLPP
Sbjct: 290 GMGSPPMMGQQQAMAAMAAAQGLP----PNLLGSVQLPP 323

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BLAST of CmoCh16G012020 vs. ExPASy Swiss-Prot
Match: O49662 (AT-hook motif nuclear-localized protein 24 OS=Arabidopsis thaliana OX=3702 GN=AHL24 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.8e-62
Identity = 125/199 (62.81%), Postives = 152/199 (76.38%), Query Frame = 0


Query: 29  SSGDHDDDDDPHQTLGGPGDVVG------RRPRGRPPGSKNKPKPPVIITRESANTLRVH 88
           +SG    D D H   G  G   G      RRPRGRP GSKNKPKPP+IITR+SAN LR H
Sbjct: 76  NSGSEGKDIDIHGGSGEGGGGSGGDHQMTRRPRGRPAGSKNKPKPPIIITRDSANALRTH 135

Query: 89  ILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVGLRQPA---SAGAVLTLQGRFEI 148
           ++E+G GCD+ + +A +ARRRQRG+C++SG+GNVTNV +RQP    S G+V++L GRFEI
Sbjct: 136 VMEIGDGCDLVESVATFARRRQRGVCVMSGTGNVTNVTIRQPGSHPSPGSVVSLHGRFEI 195

Query: 149 LSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERL 208
           LSLSGSFLPPPAPP AT L+++LAGGQGQVVGG+V G L  AGPV+++AASF+N AYERL
Sbjct: 196 LSLSGSFLPPPAPPTATGLSVYLAGGQGQVVGGSVVGPLLCAGPVVVMAASFSNAAYERL 255

Query: 209 PLDEEDQQQAPTGSGGGGG 219
           PL EED+ Q P   GGGGG
Sbjct: 256 PL-EEDEMQTPVHGGGGGG 273

[Close]

BLAST of CmoCh16G012020 vs. ExPASy Swiss-Prot
Match: Q9SR17 (AT-hook motif nuclear-localized protein 19 OS=Arabidopsis thaliana OX=3702 GN=AHL19 PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.9e-59
Identity = 131/252 (51.98%), Postives = 166/252 (65.87%), Query Frame = 0


Query: 14  LQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPG--------DVVGRRPRGRPPGSKNKP 73
           +   +D   N   H    D++++DD    L G          +   RRPRGRP GSKNKP
Sbjct: 34  MNMAMDSGHNNHHHHQEVDNNNNDDDRDNLSGDDHEPREGAVEAPTRRPRGRPAGSKNKP 93

Query: 74  KPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVGLRQPA 133
           KPP+ +TR+S N L+ H++E+ SG D+ + +A +ARRRQRGICILSG+G V NV LRQP+
Sbjct: 94  KPPIFVTRDSPNALKSHVMEIASGTDVIETLATFARRRQRGICILSGNGTVANVTLRQPS 153

Query: 134 SA--------GAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGE 193
           +A         AVL LQGRFEILSL+GSFLP PAPPG+T LTI+LAGGQGQVVGG+V G 
Sbjct: 154 TAAVAAAPGGAAVLALQGRFEILSLTGSFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGP 213

Query: 194 LTAAGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGG--GGSGGGVGNNNNNNPFQD 248
           L AAGPV+LIAA+F+N  YERLPL+EE+  +   G G GG   G  GG G+  ++     
Sbjct: 214 LMAAGPVMLIAATFSNATYERLPLEEEEAAERGGGGGSGGVVPGQLGGGGSPLSSGAGGG 273

[Close]

BLAST of CmoCh16G012020 vs. ExPASy TrEMBL
Match: A0A6J1EBN1 (AT-hook motif nuclear-localized protein OS=Cucurbita moschata OX=3662 GN=LOC111431098 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.5e-141
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MAGLDLGSRYLNHLQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPGDVVGRRPRGRPPG 60
           MAGLDLGSRYLNHLQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPGDVVGRRPRGRPPG
Sbjct: 1   MAGLDLGSRYLNHLQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPGDVVGRRPRGRPPG 60

Query: 61  SKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVG 120
           SKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVG
Sbjct: 61  SKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVG 120

Query: 121 LRQPASAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA 180
           LRQPASAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA
Sbjct: 121 LRQPASAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA 180

Query: 181 AGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGGGGSGGGVGNNNNNNPFQDPSNSG 240
           AGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGGGGSGGGVGNNNNNNPFQDPSNSG
Sbjct: 181 AGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGGGGSGGGVGNNNNNNPFQDPSNSG 240

Query: 241 LPFLNLPLHMQNVQLPPF 259
           LPFLNLPLHMQNVQLPPF
Sbjct: 241 LPFLNLPLHMQNVQLPPF 258

[Close]

BLAST of CmoCh16G012020 vs. ExPASy TrEMBL
Match: A0A6J1HMX3 (AT-hook motif nuclear-localized protein 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465093 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 6.0e-138
Identity = 254/258 (98.45%), Postives = 254/258 (98.45%), Query Frame = 0


Query: 1   MAGLDLGSRYLNHLQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPGDVVGRRPRGRPPG 60
           MAGLDLGSRYLNHLQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPGDVVGRRPRGRPPG
Sbjct: 1   MAGLDLGSRYLNHLQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPGDVVGRRPRGRPPG 60

Query: 61  SKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVG 120
           SKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVG
Sbjct: 61  SKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVG 120

Query: 121 LRQPASAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA 180
           LRQPASAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA
Sbjct: 121 LRQPASAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA 180

Query: 181 AGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGGGGSGGGVGNNNNNNPFQDPSNSG 240
           AGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGG   GGGV NNNNNNPFQDPSNSG
Sbjct: 181 AGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGG---GGGVSNNNNNNPFQDPSNSG 240

Query: 241 LPFLNLPLHMQNVQLPPF 259
           LPFLNLPLHMQNVQLPPF
Sbjct: 241 LPFLNLPLHMQNVQLPPF 255

[Close]

BLAST of CmoCh16G012020 vs. ExPASy TrEMBL
Match: A0A5A7UHV1 (AT-hook motif nuclear-localized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001680 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.7e-124
Identity = 236/258 (91.47%), Postives = 241/258 (93.41%), Query Frame = 0


Query: 1   MAGLDLGSRYLNHLQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPGDVVGRRPRGRPPG 60
           MAGLDLGSRYL HLQ  VD     GGHFSSGDH DDDDPHQTLGG GDVVGRRPRGRPPG
Sbjct: 1   MAGLDLGSRYLTHLQPQVD-----GGHFSSGDHQDDDDPHQTLGGTGDVVGRRPRGRPPG 60

Query: 61  SKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVG 120
           SKNKPKPPVIITRESANTLRVHILEVGSGCD+FDC+A+YARRRQRGICILSGSGNVTNVG
Sbjct: 61  SKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCVASYARRRQRGICILSGSGNVTNVG 120

Query: 121 LRQPASAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA 180
           LRQPA+AG VLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA
Sbjct: 121 LRQPAAAG-VLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA 180

Query: 181 AGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGGGGSGGGVGNNNNNNPFQDPSNSG 240
           AGPVILIAASFTNVAYERLPLDEEDQQQ P     GGGGSGGGVGNNNNNNPFQDP+NSG
Sbjct: 181 AGPVILIAASFTNVAYERLPLDEEDQQQTP----AGGGGSGGGVGNNNNNNPFQDPTNSG 240

Query: 241 LPFLNLPLHMQNVQLPPF 259
           LPFLNLPLHMQNVQLPPF
Sbjct: 241 LPFLNLPLHMQNVQLPPF 248

[Close]

BLAST of CmoCh16G012020 vs. ExPASy TrEMBL
Match: A0A0A0L6J8 (AT-hook motif nuclear-localized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011730 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.7e-124
Identity = 236/258 (91.47%), Postives = 241/258 (93.41%), Query Frame = 0


Query: 1   MAGLDLGSRYLNHLQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPGDVVGRRPRGRPPG 60
           MAGLDLG+RYL HLQ  VD     GGHFSSGDH DDDDPHQTLGG GDVVGRRPRGRPPG
Sbjct: 1   MAGLDLGTRYLTHLQPQVD-----GGHFSSGDHQDDDDPHQTLGGTGDVVGRRPRGRPPG 60

Query: 61  SKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVG 120
           SKNKPKPPVIITRESANTLRVHILEVGSGCD+FDC+A+YARRRQRGICILSGSGNVTNVG
Sbjct: 61  SKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCVASYARRRQRGICILSGSGNVTNVG 120

Query: 121 LRQPASAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA 180
           LRQPA+AG VLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA
Sbjct: 121 LRQPAAAG-VLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA 180

Query: 181 AGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGGGGSGGGVGNNNNNNPFQDPSNSG 240
           AGPVILIAASFTNVAYERLPLDEEDQQQ P     GGGGSGGGVGNNNNNNPFQDPSNSG
Sbjct: 181 AGPVILIAASFTNVAYERLPLDEEDQQQTP----AGGGGSGGGVGNNNNNNPFQDPSNSG 240

Query: 241 LPFLNLPLHMQNVQLPPF 259
           LPFLNLPLHMQNVQLPPF
Sbjct: 241 LPFLNLPLHMQNVQLPPF 248

[Close]

BLAST of CmoCh16G012020 vs. ExPASy TrEMBL
Match: A0A1S3BJP6 (AT-hook motif nuclear-localized protein OS=Cucumis melo OX=3656 GN=LOC103490791 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.7e-124
Identity = 236/258 (91.47%), Postives = 241/258 (93.41%), Query Frame = 0


Query: 1   MAGLDLGSRYLNHLQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPGDVVGRRPRGRPPG 60
           MAGLDLGSRYL HLQ  VD     GGHFSSGDH DDDDPHQTLGG GDVVGRRPRGRPPG
Sbjct: 1   MAGLDLGSRYLTHLQPQVD-----GGHFSSGDHQDDDDPHQTLGGTGDVVGRRPRGRPPG 60

Query: 61  SKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVG 120
           SKNKPKPPVIITRESANTLRVHILEVGSGCD+FDC+A+YARRRQRGICILSGSGNVTNVG
Sbjct: 61  SKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCVASYARRRQRGICILSGSGNVTNVG 120

Query: 121 LRQPASAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA 180
           LRQPA+AG VLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA
Sbjct: 121 LRQPAAAG-VLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTA 180

Query: 181 AGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGGGGSGGGVGNNNNNNPFQDPSNSG 240
           AGPVILIAASFTNVAYERLPLDEEDQQQ P     GGGGSGGGVGNNNNNNPFQDP+NSG
Sbjct: 181 AGPVILIAASFTNVAYERLPLDEEDQQQTP----AGGGGSGGGVGNNNNNNPFQDPTNSG 240

Query: 241 LPFLNLPLHMQNVQLPPF 259
           LPFLNLPLHMQNVQLPPF
Sbjct: 241 LPFLNLPLHMQNVQLPPF 248

[Close]

BLAST of CmoCh16G012020 vs. TAIR 10
Match: AT4G17800.1 (Predicted AT-hook DNA-binding family protein )

HSP 1 Score: 320.9 bits (821), Expect = 9.7e-88
Identity = 187/291 (64.26%), Postives = 213/291 (73.20%), Query Frame = 0


Query: 1   MAGLDLGS--RYLNHL---------QTGVDDPLNRG---GHFSSGDHDDDDDPHQTL--- 60
           MAGLDLG+  RY+NH               D +  G   GHF+  D D++++ HQ L   
Sbjct: 1   MAGLDLGTAFRYVNHQLHRPDLHLHHNSSSDDVTPGAGMGHFTVDDEDNNNN-HQGLDLA 60

Query: 61  --------------GGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSG 120
                         GG GDVVGRRPRGRPPGSKNKPKPPVIITRESANTLR HILEV +G
Sbjct: 61  SGGGSGSSGGGGGHGGGGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVTNG 120

Query: 121 CDIFDCIAAYARRRQRGICILSGSGNVTNVGLRQPASAGAVLTLQGRFEILSLSGSFLPP 180
           CD+FDC+A YARRRQRGIC+LSGSG VTNV +RQP++AGAV+TLQG FEILSLSGSFLPP
Sbjct: 121 CDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPSAAGAVVTLQGTFEILSLSGSFLPP 180

Query: 181 PAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQA 240
           PAPPGATSLTIFLAGGQGQVVGG+V GELTAAGPVI+IAASFTNVAYERLPL+E++QQQ 
Sbjct: 181 PAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEDEQQQQ 240

Query: 241 PTGSGGGGGGSGGGVGNNNNNNPFQDPS---NSGLPFLNLPLHMQ-NVQLP 257
                 GGG +GGG       N F + +     GLPF NLP++MQ NVQLP
Sbjct: 241 L-----GGGSNGGG-------NLFPEVAAGGGGGLPFFNLPMNMQPNVQLP 278

[Close]

BLAST of CmoCh16G012020 vs. TAIR 10
Match: AT2G35270.1 (Predicted AT-hook DNA-binding family protein )

HSP 1 Score: 294.7 bits (753), Expect = 7.4e-80
Identity = 169/289 (58.48%), Postives = 197/289 (68.17%), Query Frame = 0


Query: 1   MAGLDLG--SRYLNHLQTGVDDPLNRGGHFSSGDHDDDD--------------DPHQTL- 60
           MAGLDLG  SRY++++  G       GG F++ +H +DD              + HQ L 
Sbjct: 1   MAGLDLGTTSRYVHNVDGG------GGGQFTTDNHHEDDGGAGGNHHHHHHNHNHHQGLD 60

Query: 61  ---------------GGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGS 120
                          GG GD+V RRPRGRP GSKNKPKPPVI+TRESANTLR HILEVGS
Sbjct: 61  LIASNDNSGLGGGGGGGSGDLVMRRPRGRPAGSKNKPKPPVIVTRESANTLRAHILEVGS 120

Query: 121 GCDIFDCIAAYARRRQRGICILSGSGNVTNVGLRQPASAGAVLTLQGRFEILSLSGSFLP 180
           GCD+F+CI+ YARRRQRGIC+LSG+G VTNV +RQP +AGAV+TL+G FEILSLSGSFLP
Sbjct: 121 GCDVFECISTYARRRQRGICVLSGTGTVTNVSIRQPTAAGAVVTLRGTFEILSLSGSFLP 180

Query: 181 PPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQ 240
           PPAPPGATSLTIFLAG QGQVVGG V GEL AAGPV+++AASFTNVAYERLPLDE ++  
Sbjct: 181 PPAPPGATSLTIFLAGAQGQVVGGNVVGELMAAGPVMVMAASFTNVAYERLPLDEHEEHL 240

Query: 241 APTGSGGGGG----GSGGGVGNNNNNNPFQDPSNSGLPFLNLPLHMQNV 254
              G GGGG      +GGG                GLPF NLP+ M  +
Sbjct: 241 QSGGGGGGGNMYSEATGGG---------------GGLPFFNLPMSMPQI 268

[Close]

BLAST of CmoCh16G012020 vs. TAIR 10
Match: AT4G12050.1 (Predicted AT-hook DNA-binding family protein )

HSP 1 Score: 254.2 bits (648), Expect = 1.1e-67
Identity = 135/219 (61.64%), Postives = 168/219 (76.71%), Query Frame = 0


Query: 44  GGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRR 103
           GG G+ + RRPRGRP GSKNKPK P+IITR+SAN LR H++E+G GCDI DC+A +ARRR
Sbjct: 110 GGSGEQMTRRPRGRPAGSKNKPKAPIIITRDSANALRTHVMEIGDGCDIVDCMATFARRR 169

Query: 104 QRGICILSGSGNVTNVGLRQPAS-AGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFL 163
           QRG+C++SG+G+VTNV +RQP S  G+V++L GRFEILSLSGSFLPPPAPP AT L+++L
Sbjct: 170 QRGVCVMSGTGSVTNVTIRQPGSPPGSVVSLHGRFEILSLSGSFLPPPAPPAATGLSVYL 229

Query: 164 AGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGGGGSGG 223
           AGGQGQVVGG+V G L  +GPV+++AASF+N AYERLPL EED+ Q P   GGGGGG GG
Sbjct: 230 AGGQGQVVGGSVVGPLLCSGPVVVMAASFSNAAYERLPL-EEDEMQTPVQGGGGGGGGGG 289

Query: 224 GVGNNNNNNPFQD----PSNSGLPFLNLPLHMQNVQLPP 258
           G+G+       Q      +  GLP    P  + +VQLPP
Sbjct: 290 GMGSPPMMGQQQAMAAMAAAQGLP----PNLLGSVQLPP 323

[Close]

BLAST of CmoCh16G012020 vs. TAIR 10
Match: AT4G22810.1 (Predicted AT-hook DNA-binding family protein )

HSP 1 Score: 240.7 bits (613), Expect = 1.3e-63
Identity = 125/199 (62.81%), Postives = 152/199 (76.38%), Query Frame = 0


Query: 29  SSGDHDDDDDPHQTLGGPGDVVG------RRPRGRPPGSKNKPKPPVIITRESANTLRVH 88
           +SG    D D H   G  G   G      RRPRGRP GSKNKPKPP+IITR+SAN LR H
Sbjct: 76  NSGSEGKDIDIHGGSGEGGGGSGGDHQMTRRPRGRPAGSKNKPKPPIIITRDSANALRTH 135

Query: 89  ILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVGLRQPA---SAGAVLTLQGRFEI 148
           ++E+G GCD+ + +A +ARRRQRG+C++SG+GNVTNV +RQP    S G+V++L GRFEI
Sbjct: 136 VMEIGDGCDLVESVATFARRRQRGVCVMSGTGNVTNVTIRQPGSHPSPGSVVSLHGRFEI 195

Query: 149 LSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERL 208
           LSLSGSFLPPPAPP AT L+++LAGGQGQVVGG+V G L  AGPV+++AASF+N AYERL
Sbjct: 196 LSLSGSFLPPPAPPTATGLSVYLAGGQGQVVGGSVVGPLLCAGPVVVMAASFSNAAYERL 255

Query: 209 PLDEEDQQQAPTGSGGGGG 219
           PL EED+ Q P   GGGGG
Sbjct: 256 PL-EEDEMQTPVHGGGGGG 273

[Close]

BLAST of CmoCh16G012020 vs. TAIR 10
Match: AT3G04570.1 (AT-hook motif nuclear-localized protein 19 )

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-60
Identity = 131/252 (51.98%), Postives = 166/252 (65.87%), Query Frame = 0


Query: 14  LQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPG--------DVVGRRPRGRPPGSKNKP 73
           +   +D   N   H    D++++DD    L G          +   RRPRGRP GSKNKP
Sbjct: 34  MNMAMDSGHNNHHHHQEVDNNNNDDDRDNLSGDDHEPREGAVEAPTRRPRGRPAGSKNKP 93

Query: 74  KPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVGLRQPA 133
           KPP+ +TR+S N L+ H++E+ SG D+ + +A +ARRRQRGICILSG+G V NV LRQP+
Sbjct: 94  KPPIFVTRDSPNALKSHVMEIASGTDVIETLATFARRRQRGICILSGNGTVANVTLRQPS 153

Query: 134 SA--------GAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGE 193
           +A         AVL LQGRFEILSL+GSFLP PAPPG+T LTI+LAGGQGQVVGG+V G 
Sbjct: 154 TAAVAAAPGGAAVLALQGRFEILSLTGSFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGP 213

Query: 194 LTAAGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGG--GGSGGGVGNNNNNNPFQD 248
           L AAGPV+LIAA+F+N  YERLPL+EE+  +   G G GG   G  GG G+  ++     
Sbjct: 214 LMAAGPVMLIAATFSNATYERLPLEEEEAAERGGGGGSGGVVPGQLGGGGSPLSSGAGGG 273

The following BLAST results are available for this feature:

BLAST of CmoCh16G012020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23620	1.4e-86	64.26	AT-hook motif nuclear-localized protein 23 OS=Arabidopsis thaliana OX=3702 GN=AH...	[more]
O82166	1.0e-78	58.48	AT-hook motif nuclear-localized protein 21 OS=Arabidopsis thaliana OX=3702 GN=AH...	[more]
Q9SZ70	1.6e-66	61.64	AT-hook motif nuclear-localized protein 26 OS=Arabidopsis thaliana OX=3702 GN=AH...	[more]
O49662	1.8e-62	62.81	AT-hook motif nuclear-localized protein 24 OS=Arabidopsis thaliana OX=3702 GN=AH...	[more]
Q9SR17	1.9e-59	51.98	AT-hook motif nuclear-localized protein 19 OS=Arabidopsis thaliana OX=3702 GN=AH...	[more]

BLAST of CmoCh16G012020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EBN1	1.5e-141	100.00	AT-hook motif nuclear-localized protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HMX3	6.0e-138	98.45	AT-hook motif nuclear-localized protein 23-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7UHV1	1.7e-124	91.47	AT-hook motif nuclear-localized protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0L6J8	1.7e-124	91.47	AT-hook motif nuclear-localized protein OS=Cucumis sativus OX=3659 GN=Csa_3G0117...	[more]
A0A1S3BJP6	1.7e-124	91.47	AT-hook motif nuclear-localized protein OS=Cucumis melo OX=3656 GN=LOC103490791 ...	[more]

BLAST of CmoCh16G012020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17800.1	9.7e-88	64.26	Predicted AT-hook DNA-binding family protein	[more]
AT2G35270.1	7.4e-80	58.48	Predicted AT-hook DNA-binding family protein	[more]
AT4G12050.1	1.1e-67	61.64	Predicted AT-hook DNA-binding family protein	[more]
AT4G22810.1	1.3e-63	62.81	Predicted AT-hook DNA-binding family protein	[more]
AT3G04570.1	1.3e-60	51.98	AT-hook motif nuclear-localized protein 19	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005175	PPC domain	PFAM	PF03479	PCC	coord: 80..193 e-value: 8.3E-28 score: 97.0
IPR005175	PPC domain	PROSITE	PS51742	PPC	coord: 76..213 score: 38.205746
IPR005175	PPC domain	CDD	cd11378	DUF296	coord: 80..191 e-value: 1.00368E-20 score: 82.6334
IPR014476	AT-hook motif nuclear-localized protein 15-29	PIRSF	PIRSF016021	ESCAROLA	coord: 8..256 e-value: 1.4E-101 score: 337.5
IPR014476	AT-hook motif nuclear-localized protein 15-29	PANTHER	PTHR31100	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15	coord: 40..257
None	No IPR available	GENE3D	3.30.1330.80		coord: 79..208 e-value: 1.3E-23 score: 85.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..243
None	No IPR available	PANTHER	PTHR31100:SF62	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23	coord: 40..257
None	No IPR available	SUPERFAMILY	117856	AF0104/ALDC/Ptd012-like	coord: 76..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012020.1	CmoCh16G012020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003680	minor groove of adenine-thymine-rich DNA binding