CmoCh16G011840 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G011840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 8444401 .. 8445852 (+)
RNA-Seq ExpressionCmoCh16G011840
SyntenyCmoCh16G011840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATATGCGAATCGATTATGATGCATAAAGAAATAGATTGGAAGTTTATGGAGCCTTCTGATTATGGTGCAGTGAATCGATTACAAGTACATTACTAATCATCTCATAGTAGTCCTAAAATGTCGATGATATTCAGATTTCTATCACGGTTTGGAACTAGTGGTCTCTGTCAGTGGTGGGTTGGCGCCACTTTTAATTTCCTTATGAAAAGTTTGAGTCACACACTTTCTCATTTAGTAGTAATCAATTCCTGAATCTTTAAATCTTAGGAGTTTCTCTTAGAATACTTTTTACTTGAAAATAAACCTCCAAATTTAAGAGAATGGAATGACAAATTAGGTTTGCCCATCAATCAGCTTCACTCTAGTTATCATCATCCTGAAAAAGAAATTATCTCGACAAGAGTCTGTTCTATTCTCATGGAGATCGTTACATTGGAGTAAAGGGATGATCCAGTCCAGTCCATAGTCTTAGTTTATTGTGAACAAAGCTTCGTATGTTCGGTGATCTGCATCATTTTTGTTTACATCATTTTTGTGACTCACAAATAATCTTATGATTGTTCTTATCATTCAACCCATTAATTTCTTTTATCAAATAATCTATATGACATAACTTCTCATTGCCCCAGATGCAATTGATCGTACGTGAGACATATTTGCTGTTTTTGAAGGTGGGTCAGTCACTCTATGCTTCACTAATCTAGAAATGTCACTTTTGAGTGATGTGTAAAGGTTATGTAGATGTTAGTTCTGGGTACCTTTGATTTACCTACTGTAAATGTAATGAAACCATTACTCCTTTCTTCCCATTCCAATTTCTGCATACCTCGATTAATCTTACCGAACAACTATCTGAAAATCTATATTACCCCGAGGATCATGTATCAGTTGGCATTGTTGACTCTACTGTATGGTTTTCTTTGCAACTGTAGAACTAGATAGCTGCATCAATTGCATTGACTGAGATACGCTACGAGTCATATTGCATTTTGGACTTCATTCCCAGTAGAATTTCTACCGATGTTCGAAGTCCGTTTTTTCTTATTTATTCATATTCTGTGGCTGCAGAGCTGGGCTTATCAGTTCCAAGGTGACTTCTTTGGGAAGATTGCTGCAGTGACAAGGGGATGTCGGCCATGGTCTTGTGGATTTCATTTAAGTACTGTGATCATTACTGCTCAATTTGGTTAACTAGTTTTGATTCTTCCAGACGACAGAATGTGTTGAAATAAGAATTCTAGTGCTTACCGGCAACTCAGGACAACATATTTCGCCTTTGTTGCCATTGTTGTTTGGTATTTGTCGTACAATAGACATCATACTATTTTTGTTTGTGGTATAGCATTTCTTGTAGACAAATGGGGGGCTGTTTTGCTTACTCCTAGACAAAGCAGCCATCAAAATAAGGCATGCCATATTTTGTACTATGAGCTTAAGACATTCTAA

mRNA sequence

ATGTCAATATGCGAATCGATTATGATGCATAAAGAAATAGATTGGAAGTTTATGGAGCCTTCTGATTATGGTGCAGTGAATCGATTACAAATGCAATTGATCGTACGTGAGACATATTTGCTGTTTTTGAAGAGCTGGGCTTATCAGTTCCAAGGTGACTTCTTTGGGAAGATTGCTGCAGTGACAAGGGGATGTCGGCCATGGACAACATATTTCGCCTTTGTTGCCATTGTTGTTTGGTATTTGTCGTACAATAGACATCATACTATTTTTGTTTGTGGTATAGCATTTCTTGTAGACAAATGGGGGGCTGTTTTGCTTACTCCTAGACAAAGCAGCCATCAAAATAAGGCATGCCATATTTTGTACTATGAGCTTAAGACATTCTAA

Coding sequence (CDS)

ATGTCAATATGCGAATCGATTATGATGCATAAAGAAATAGATTGGAAGTTTATGGAGCCTTCTGATTATGGTGCAGTGAATCGATTACAAATGCAATTGATCGTACGTGAGACATATTTGCTGTTTTTGAAGAGCTGGGCTTATCAGTTCCAAGGTGACTTCTTTGGGAAGATTGCTGCAGTGACAAGGGGATGTCGGCCATGGACAACATATTTCGCCTTTGTTGCCATTGTTGTTTGGTATTTGTCGTACAATAGACATCATACTATTTTTGTTTGTGGTATAGCATTTCTTGTAGACAAATGGGGGGCTGTTTTGCTTACTCCTAGACAAAGCAGCCATCAAAATAAGGCATGCCATATTTTGTACTATGAGCTTAAGACATTCTAA

Protein sequence

MSICESIMMHKEIDWKFMEPSDYGAVNRLQMQLIVRETYLLFLKSWAYQFQGDFFGKIAAVTRGCRPWTTYFAFVAIVVWYLSYNRHHTIFVCGIAFLVDKWGAVLLTPRQSSHQNKACHILYYELKTF
Homology
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BLAST of CmoCh16G011840 vs. ExPASy TrEMBL
Match: A0A6J1E5G0 (uncharacterized protein LOC111430946 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430946 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.5e-33
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0 

Query: 1  MSICESIMMHKEIDWKFMEPSDYGAVNRLQMQLIVRETYLLFLKSWAYQFQGDFFGKIAA 60
          MSICESIMMHKEIDWKFMEPSDYGAVNRLQMQLIVRETYLLFLKSWAYQFQGDFFGKIAA
Sbjct: 1  MSICESIMMHKEIDWKFMEPSDYGAVNRLQMQLIVRETYLLFLKSWAYQFQGDFFGKIAA 60

Query: 61 VTRGCRPWTTYFAFVAIVV 80
          VTRGCRPW+  F    +++
Sbjct: 61 VTRGCRPWSCGFHLSTVII 79

The following BLAST results are available for this feature:
BLAST of CmoCh16G011840 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G011840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E5G04.5e-3387.34uncharacterized protein LOC111430946 isoform X3 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of CmoCh16G011840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G011840.1CmoCh16G011840.1mRNA