CmoCh16G011530 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G011530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Location	Cmo_Chr16: 8225685 .. 8230064 (-)
RNA-Seq Expression	CmoCh16G011530
Synteny	CmoCh16G011530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAAAGCTTCCCTATCCATCACAATTACAAGGCTGAGGATAGAGGAGGAGCTCTCTCTTCTTCCTTCCACACCAAAACAATGTCTTCCATGGCTTTGTTTTCTCCTCCCTCTCGCCTTTCCTCACTCTCTCCTTCTTCACATCACCGAACCCACTTCCCCTCCAGACCCTTTTCCTCTCTCAGGTCCAGAAACCCTTCTTCTTGGGTCGCTGCTGACAATGGCGCCGGAATTTCAGGTGGTTCCGTCGCTGTAGAATCCGCCGTCGTACAGAAGGATCCGGAGCCGGTGGTGGAAAAGCAAGAGATCCTTGCTGAAACCAATGGGTCGGTGGCGGCTGTGGAAGAAGTGGTGGTGGTTAGCAAATTTGAAGACCCTAAATGGGTTAATGGGACTTGGGATTTGAATCAGTTCCGGAAAGACGGAAGTACTGATTGGGATGCTGTTATTGATGCCGGTAATCTTCGTAAACCCTACTTTTTCTGTTGATTTTGCTTCTAATTGCATTATGAAATCTGGATGTACATAGATACATGCAATGTCTGAGAAGCTTTTTGGGGGAAATCTTGATTCTGCAAGTTTTGATGATGTTTTGATTGTAATGAATTTCTTGGTGATGTTTGAGCAATTACTTGATGTTTGAATCAGAGGCTAGGAGGAGGAAATGGCTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGCTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTGCCAGAGGCTGAGATTCTCAATGGTATAAACATGTTTCTATGATTGTTTATCCTGTTTTCTTGAAGCTTGTCTGTTTGATATAAATGGCTAAACGTGAGTGTATGAAAATCGTTTTTAAAAGTGTACAAACTAATGTTAAGTTGATTTTGAATGTTGAAACGCATGTTTTTGAGTGATTTTAGACGTGAATGACTGATTTTAACCATTTGAAAGTCACTCGAACATGTTTTTGTTCTTTTGTTCATGTCTGTGAATCATGATTTCTACTTGTTCATAGCATTGGCTTCTCTGTATGAAAATCATGTTTAGAAGTGTGAAATCATACATGGAAGTTGATTTTAAATGTTTAAACACATGTTCTTGAGTGATTTTGAGCATGTTCTTGAGTGATTTTGAACATGAAGGACCAATTTTAACCATTTGAAAATCACACAAACGTATTTTTTGTTCTTTCTTTCACGTTTGTGGATCATGATTTCTACTTGTTCATAGCATTGGCTTCTCCGTATGAAAATCATGTTTAAAAGCGTAAAATCATACATTAAGATGATTTTGTATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAACGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATGTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGACTCAAAACGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATGTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAACGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAATGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGAGTGATTTTGAACGTAAATGACTGGTTTTACCCATTTGAAAATCACTCAAAACATATTTTTGTTCTTTCGCTCATGTCTGTGAATCATGATTTCGACGCAGGGCGTGCAGCCATGGTGGGGTTTTTCATGGCTTACTTCGTCGATAGCTTGACGGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACTTTGTTATTTATTGCAGTGGTGGGAGTTCTTTTGATCAGAAAGAACGAAGATATAGAGACTCTAAAGAAGTTGATTGATGAGACGACATTTTATGATAAACAATGGCAAGCAACTTGGCAGGATGAAACCAAAGGCTCAGGCAAAGTGTAATGTGTTCTTGTTTTGCTTTAATTATGTTTGTATCTCTTAAGATTTGGGCTTAGTAGAGACGGATAATGTGAGCTCTGAAAGATATTGAATGTTTAGGCCTCAGTTTGTTCATGTTTCTTGTTTCAGTGAAAATCTTTCTAAAAGCATGGGTTTTTCTGGAAAAAAATTCATGTCTGATAAACTTGATTATCAGTTTCACCTCACCAAGATAGACGTCTCGAAAGTATGGCGATCAAAAGGAACAAAAGACGAGTGTTTAATACGTGTTTCAACTCGGTGTCATCTAGCATACTTGATGCATCCAGAAAGTTATTGAAGTACTTCAAACATATTACACCATAAGCATGGTGTGAGATCTCATATCGATTGGAAAGAAACAACGTCGAACGAGTGCCGGTGAGTATGTTGGGCTCCGAATAGGGGTGAATTGTGAGGTCTTAATAAAATATTCTTTCTAAGGCTAGCATTGTCACACCCCCTCGAGGCTTAGCCTCCCCGTTGTAACAACTCAAGCCCACAACTAACCGATATTGTCCTATTTAGACTTCCCCCTTCAAGCTTCCCCTCATGATTTTTAAAACGCAGTCTGGTAAGAAAGAAATTTTCACACCCTTAAAAGAAGGTTTCATTCTCCTTCCCAACCTCTCACCGTCTCACTTACTACGCAATCTGCTACCGGTACACCAATCATTACTCTCGATTTGGCTTTATCGAATCCAAGGCCAACTCAACAACAAACGGCCGAGGGAATGGTCCTGCAGATTCTGGCGACATTGAGGGTGGAAAGATGGGGTTTGAAGAGGAAGCAGGTGGCGACGGGAGTTGTACGGACGGCGGAGGAAGTAGAAGGAGGGAGATTTGCAGAGCCGGAGATTATCATTTCTACACCGTGACGGCGATGGGAGTTGTACGTATGTAA

mRNA sequence

TGCAAAGCTTCCCTATCCATCACAATTACAAGGCTGAGGATAGAGGAGGAGCTCTCTCTTCTTCCTTCCACACCAAAACAATGTCTTCCATGGCTTTGTTTTCTCCTCCCTCTCGCCTTTCCTCACTCTCTCCTTCTTCACATCACCGAACCCACTTCCCCTCCAGACCCTTTTCCTCTCTCAGGTCCAGAAACCCTTCTTCTTGGGTCGCTGCTGACAATGGCGCCGGAATTTCAGGTGGTTCCGTCGCTGTAGAATCCGCCGTCGTACAGAAGGATCCGGAGCCGGTGGTGGAAAAGCAAGAGATCCTTGCTGAAACCAATGGGTCGGTGGCGGCTGTGGAAGAAGTGGTGGTGGTTAGCAAATTTGAAGACCCTAAATGGGTTAATGGGACTTGGGATTTGAATCAGTTCCGGAAAGACGGAAGTACTGATTGGGATGCTGTTATTGATGCCGAGGCTAGGAGGAGGAAATGGCTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGCTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTGCCAGAGGCTGAGATTCTCAATGTGGTGGGAGTTCTTTTGATCAGAAAGAACGAAGATATAGAGACTCTAAAGAAGTTGATTGATGAGACGACATTTTATGATAAACAATGGCAAGCAACTTGGCAGGATGAAACCAAAGGCTCAGGCAAAGCCAACTCAACAACAAACGGCCGAGGGAATGGTCCTGCAGATTCTGGCGACATTGAGGGTGGAAAGATGGGGTTTGAAGAGGAAGCAGGTGGCGACGGGAGTTGTACGGACGGCGGAGGAAGTAGAAGGAGGGAGATTTGCAGAGCCGGAGATTATCATTTCTACACCGTGACGGCGATGGGAGTTGTACGTATGTAA

Coding sequence (CDS)

ATGTCTTCCATGGCTTTGTTTTCTCCTCCCTCTCGCCTTTCCTCACTCTCTCCTTCTTCACATCACCGAACCCACTTCCCCTCCAGACCCTTTTCCTCTCTCAGGTCCAGAAACCCTTCTTCTTGGGTCGCTGCTGACAATGGCGCCGGAATTTCAGGTGGTTCCGTCGCTGTAGAATCCGCCGTCGTACAGAAGGATCCGGAGCCGGTGGTGGAAAAGCAAGAGATCCTTGCTGAAACCAATGGGTCGGTGGCGGCTGTGGAAGAAGTGGTGGTGGTTAGCAAATTTGAAGACCCTAAATGGGTTAATGGGACTTGGGATTTGAATCAGTTCCGGAAAGACGGAAGTACTGATTGGGATGCTGTTATTGATGCCGAGGCTAGGAGGAGGAAATGGCTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGCTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTGCCAGAGGCTGAGATTCTCAATGTGGTGGGAGTTCTTTTGATCAGAAAGAACGAAGATATAGAGACTCTAAAGAAGTTGATTGATGAGACGACATTTTATGATAAACAATGGCAAGCAACTTGGCAGGATGAAACCAAAGGCTCAGGCAAAGCCAACTCAACAACAAACGGCCGAGGGAATGGTCCTGCAGATTCTGGCGACATTGAGGGTGGAAAGATGGGGTTTGAAGAGGAAGCAGGTGGCGACGGGAGTTGTACGGACGGCGGAGGAAGTAGAAGGAGGGAGATTTGCAGAGCCGGAGATTATCATTTCTACACCGTGACGGCGATGGGAGTTGTACGTATGTAA

Protein sequence

MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVESAVVQKDPEPVVEKQEILAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNVVGVLLIRKNEDIETLKKLIDETTFYDKQWQATWQDETKGSGKANSTTNGRGNGPADSGDIEGGKMGFEEEAGGDGSCTDGGGSRRREICRAGDYHFYTVTAMGVVRM

Homology

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BLAST of CmoCh16G011530 vs. ExPASy Swiss-Prot
Match: Q9SYX1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 6.5e-50
Identity = 122/265 (46.04%), Postives = 151/265 (56.98%), Query Frame = 0


Query: 4   MALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPS----SWVAADNGAGISGGSVAVE 63
           MALFSPP   SSL     +    P   FS L S   S    +  ++D+G+     +V+VE
Sbjct: 1   MALFSPPISSSSL----QNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVE 60

Query: 64  S----AVVQKDP---EPVVEKQEILAETNGSVAAVEEVVV--VSKFEDPKWVNGTWDLNQ 123
           +     V+ K+P    P V+K+E     N +V   E      V KF+D +W+NGTWDL Q
Sbjct: 61  APEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQ 120

Query: 124 FRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEIL 183
           F KDG TDWD+VI AEA+RRKWLE NPE++SN++PVLFDTSI+PWWAWIKRYHLPEAE+L
Sbjct: 121 FEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELL 180

Query: 184 N--------------------------------------VVGVLLIRKNEDIETLKKLID 215
           N                                      V GVL IRKNED++ LK L D
Sbjct: 181 NGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFD 240

[Close]

BLAST of CmoCh16G011530 vs. ExPASy Swiss-Prot
Match: Q6NKS4 (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.6e-43
Identity = 111/255 (43.53%), Postives = 138/255 (54.12%), Query Frame = 0


Query: 3   SMALFSPPSRLSSLSPS---SHHRTHFPSRPFSSLRSRNPSSWVAADNGAGI------SG 62
           SMALFSPP   S  +P+       +   ++ FS +     SS    DNG           
Sbjct: 4   SMALFSPPISSSLQNPNLIPKISTSLLSTKRFSLISVPRASS----DNGTTSPVVEIPKP 63

Query: 63  GSVAVESAVVQKDPEPVVEKQEILAETNGSV---AAVEEVVVVSKFEDPKWVNGTWDLNQ 122
            SVAVE   V+   E         A  NG+V   A       V K+++ KWVNGTWDL Q
Sbjct: 64  ASVAVEEVPVKSPAE------SSSASENGAVGGEATDSSTETVIKYQNAKWVNGTWDLKQ 123

Query: 123 FRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEIL 182
           F KDG TDWD+VI +EA+RRKWLE+NPE++SN++ V+FDTSI+PWWAW+KRYHLPEAE+L
Sbjct: 124 FEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELL 183

Query: 183 N--------------------------------------VVGVLLIRKNEDIETLKKLID 208
           N                                      V GVL IRKNED++ LK L D
Sbjct: 184 NGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLKDLFD 243

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BLAST of CmoCh16G011530 vs. ExPASy TrEMBL
Match: A0A6J1EC24 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431193 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 1.2e-110
Identity = 214/252 (84.92%), Postives = 214/252 (84.92%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVES 60
           MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVES
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVES 60

Query: 61  AVVQKDPEPVVEKQEILAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120
           AVVQKDPEPVVEKQEILAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD
Sbjct: 61  AVVQKDPEPVVEKQEILAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120

Query: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILN--------- 180
           AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILN         
Sbjct: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180

Query: 181 -----------------------------VVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 215
                                        VVGVLLIRKNEDIETLKKLIDETTFYDKQWQ
Sbjct: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240

[Close]

BLAST of CmoCh16G011530 vs. ExPASy TrEMBL
Match: A0A6J1HQ78 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111465096 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.9e-108
Identity = 210/252 (83.33%), Postives = 211/252 (83.73%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVES 60
           MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVE 
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVEP 60

Query: 61  AVVQKDPEPVVEKQEILAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120
           AVVQKDPEP VEK+E LAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD
Sbjct: 61  AVVQKDPEPAVEKKESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120

Query: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILN--------- 180
           AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILN         
Sbjct: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180

Query: 181 -----------------------------VVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 215
                                        VVGVLLIRKNEDIETLKKLIDETTFYDKQWQ
Sbjct: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240

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BLAST of CmoCh16G011530 vs. ExPASy TrEMBL
Match: A0A5A7TG76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00700 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 3.1e-87
Identity = 188/265 (70.94%), Postives = 196/265 (73.96%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSS---------WVAADNGAGI 60
           MSSMALFSP S LS+LSPSSHH THF  RPFSSLR+RNPSS            ADNGAGI
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 61  SGGS--VAVESAVVQKDPEPVVEKQEILAETNGSVAAVEEVV-VVSKFEDPKWVNGTWDL 120
           SGGS  VAVE+ V QKDPEP    +E LA TNGSVAA EEVV VVSKFEDPKWVNGTWDL
Sbjct: 61  SGGSATVAVETPVEQKDPEPA---EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWDL 120

Query: 121 NQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAE 180
           NQF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPEAE
Sbjct: 121 NQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAE 180

Query: 181 ILN--------------------------------------VVGVLLIRKNEDIETLKKL 215
           +LN                                      VVGVLLIRKNEDIETLKKL
Sbjct: 181 LLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKL 240

[Close]

BLAST of CmoCh16G011530 vs. ExPASy TrEMBL
Match: A0A1S3BLD8 (uncharacterized protein LOC103490842 OS=Cucumis melo OX=3656 GN=LOC103490842 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 3.1e-87
Identity = 188/265 (70.94%), Postives = 196/265 (73.96%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSS---------WVAADNGAGI 60
           MSSMALFSP S LS+LSPSSHH THF  RPFSSLR+RNPSS            ADNGAGI
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 61  SGGS--VAVESAVVQKDPEPVVEKQEILAETNGSVAAVEEVV-VVSKFEDPKWVNGTWDL 120
           SGGS  VAVE+ V QKDPEP    +E LA TNGSVAA EEVV VVSKFEDPKWVNGTWDL
Sbjct: 61  SGGSATVAVETPVEQKDPEPA---EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWDL 120

Query: 121 NQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAE 180
           NQF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPEAE
Sbjct: 121 NQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAE 180

Query: 181 ILN--------------------------------------VVGVLLIRKNEDIETLKKL 215
           +LN                                      VVGVLLIRKNEDIETLKKL
Sbjct: 181 LLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKL 240

[Close]

BLAST of CmoCh16G011530 vs. ExPASy TrEMBL
Match: A0A0A0L5D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017160 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 8.9e-87
Identity = 187/266 (70.30%), Postives = 196/266 (73.68%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSS--------WVAADNGAGIS 60
           MSSMALFSP S LS+ SP SHH THF  RPFSSLR+RNPSS           ADNGAGIS
Sbjct: 1   MSSMALFSPSSHLSTFSP-SHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGIS 60

Query: 61  GGS--VAVESAVVQKDPEP---VVEKQEILAETNGSVAAVEEVV-VVSKFEDPKWVNGTW 120
           GGS  V+VE+ V QKDPEP     E+QE LA TNGSVAA EEVV VVSKFEDPKWVNGTW
Sbjct: 61  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 120

Query: 121 DLNQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPE 180
           DLNQF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPE
Sbjct: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180

Query: 181 AEILN--------------------------------------VVGVLLIRKNEDIETLK 215
           AE+LN                                      VVGVLLIRKNEDIETLK
Sbjct: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240

[Close]

BLAST of CmoCh16G011530 vs. TAIR 10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 199.1 bits (505), Expect = 4.6e-51
Identity = 122/265 (46.04%), Postives = 151/265 (56.98%), Query Frame = 0


Query: 4   MALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPS----SWVAADNGAGISGGSVAVE 63
           MALFSPP   SSL     +    P   FS L S   S    +  ++D+G+     +V+VE
Sbjct: 1   MALFSPPISSSSL----QNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVE 60

Query: 64  S----AVVQKDP---EPVVEKQEILAETNGSVAAVEEVVV--VSKFEDPKWVNGTWDLNQ 123
           +     V+ K+P    P V+K+E     N +V   E      V KF+D +W+NGTWDL Q
Sbjct: 61  APEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQ 120

Query: 124 FRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEIL 183
           F KDG TDWD+VI AEA+RRKWLE NPE++SN++PVLFDTSI+PWWAWIKRYHLPEAE+L
Sbjct: 121 FEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELL 180

Query: 184 N--------------------------------------VVGVLLIRKNEDIETLKKLID 215
           N                                      V GVL IRKNED++ LK L D
Sbjct: 181 NGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFD 240

[Close]

BLAST of CmoCh16G011530 vs. TAIR 10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-44
Identity = 111/255 (43.53%), Postives = 138/255 (54.12%), Query Frame = 0


Query: 3   SMALFSPPSRLSSLSPS---SHHRTHFPSRPFSSLRSRNPSSWVAADNGAGI------SG 62
           SMALFSPP   S  +P+       +   ++ FS +     SS    DNG           
Sbjct: 4   SMALFSPPISSSLQNPNLIPKISTSLLSTKRFSLISVPRASS----DNGTTSPVVEIPKP 63

Query: 63  GSVAVESAVVQKDPEPVVEKQEILAETNGSV---AAVEEVVVVSKFEDPKWVNGTWDLNQ 122
            SVAVE   V+   E         A  NG+V   A       V K+++ KWVNGTWDL Q
Sbjct: 64  ASVAVEEVPVKSPAE------SSSASENGAVGGEATDSSTETVIKYQNAKWVNGTWDLKQ 123

Query: 123 FRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEIL 182
           F KDG TDWD+VI +EA+RRKWLE+NPE++SN++ V+FDTSI+PWWAW+KRYHLPEAE+L
Sbjct: 124 FEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELL 183

Query: 183 N--------------------------------------VVGVLLIRKNEDIETLKKLID 208
           N                                      V GVL IRKNED++ LK L D
Sbjct: 184 NGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLKDLFD 243

The following BLAST results are available for this feature:

BLAST of CmoCh16G011530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYX1	6.5e-50	46.04	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]
Q6NKS4	2.6e-43	43.53	Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ...	[more]

BLAST of CmoCh16G011530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EC24	1.2e-110	84.92	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita mo...	[more]
A0A6J1HQ78	1.9e-108	83.33	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita ma...	[more]
A0A5A7TG76	3.1e-87	70.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BLD8	3.1e-87	70.94	uncharacterized protein LOC103490842 OS=Cucumis melo OX=3656 GN=LOC103490842 PE=...	[more]
A0A0A0L5D8	8.9e-87	70.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017160 PE=4 SV=1	[more]

BLAST of CmoCh16G011530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17600.1	4.6e-51	46.04	Chlorophyll A-B binding family protein	[more]
AT5G47110.1	1.9e-44	43.53	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR14154:SF87	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN 3 ISOTYPE 1, CHLOROPLASTIC-RELATED	coord: 30..171 coord: 171..213
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 30..171 coord: 171..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G011530.1	CmoCh16G011530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding