CmoCh16G010890 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G010890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	peptidyl-tRNA hydrolase ICT1, mitochondrial
Location	Cmo_Chr16: 7697908 .. 7702323 (+)
RNA-Seq Expression	CmoCh16G010890
Synteny	CmoCh16G010890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGTCGTCTTCCCAGGCTCAAAGCCCTTAGAAGCTGTAGAGGAAGCTCATCGCTGCTAACTCGTTTTCAAGGTACCTTGGAGAAAGAATGGCGGTCATTAGAACCACCACAAACATGATCCTCAGAGAAATCCTTCATTCGCAACCCTATTTTACTCTATCAGTACCCCCACTCTTCCCTGCTACTTTGAACAATCCCAATGCCGCTTTGCGATTCCGGCTGCGTGAGATCAGTTTTGGTCGTGTCATATGTGCCGCTTCGGAGTCGTCCGGTGCCGGAGGAAAGGTATCTTCCCGCCTGTCGCAGGTTCAGCAGCTGTTGCAAGAGGCGGAGGAGCGCGCTCTATCGGCTGACGTCGAACCCGCCCCTAAAATCACTCTCGGTATGTCCCGAAAATCACTCACTAATCTATTGTTTAAAGTGATTGTTTTTTTTACTGCGTCAATTGGTAGTTGTGGTAGTATAATCCCCTGAGATGTAACGTGTATGGTTGCTAATTCAAGCCAGAGGGACTACTCGTCGATATAGGTTCACTTTTGTCTATTTTCTCTAGCCCTAAATTATCTGAGTGTAAAGTAGCTCACATCCATTGAAACTGCTCGTAGCTACTTTGAAGAAGATGAGTCTTTTGTCCAATGGATGTTGAATCACTGAAACTCCCGGATTTTGTTCAGTTTGTGACATATCTTCTAAGAATAATTTACTGAACCCTTGAATGTCCTTTTCCTTTCTGATTTTGATTCCCGGAAATGCACTCACTTTCCTTCTTGTTTTTTTTCTGATCCTGGGCCGAAGCCTTGCACTTCACTATGCTGCGTGCTTTAGAAACATTGGTTTATAGCTAGGCTTGTTGCACTTGCACATGGAAGAACTAACACTATAACAAGGAAACATGGTGTTTAAATGAAGTTGTTATTCCAGGGCTTTACTCGATTTCAACCAATAAAGAGAGAACTATTAAAGATGGTTTGGATAATGCTAATGCTTGTTGGAGTTTGGGATTAAGAGAAATCTTAATGAAAAGGAGCTTGAAGAATGTCTCTTTTTGAATTCTTGATTGATGATTTCAAGCTGAATGATATGGATTATGGCAGGTTATTGAATATGGATTCCCTCTGAACCTTCTCTAGTGCATTTTCCATTGAGAGACAACAGAGTGGTTGCCAAAGAAAAAAGGTGTTGTCTGTTCTGTTGCGAGCTCAGAGAAAATTTGCATTTCATTCCTCTGGTTTTCAATTTGTATGTCTGATTTTTCATCAAACAATTTGCAGTTTCAAAGAGATTTTATTTAATACACTTTCTTCCTCTTTCTAAAGAACTCTCTCTAGTGCATCCATGTATAAACGTATATAGGGTGAAATGCTAGGTGCTAGAGTCTTAGTAAGAGCCTTTTTACATTCAAGTGGAGATGGAAAATCCACTGGAGTGTGATTTTTTCTTTTGGAATTTTTACATGGAAAGCTAAGTACTTTGGATGCAATAAAAAAGAAGAACCTAACTTGTTTATCTCCTTCTAGGAGCTATTTTAATCACAATTATATTGACTTTCAAGGAAATTGAAGATGCTTTTATAGCTCCTTTGATAATGGAAAGGAACGTTATGACTACTCTTCAATTGTCGCAGAATTGCAAAGATACAAAAAAAAAAAAACAGATGCTTAATCACAAGAAAAAGGAGCTATTAGTGGCAGGAGAATTTCGGCCAATCAGTTTCTAATTGGAGAAAATGGTAATTAAAATGAAATTGAGAGAGAGGAAGACGGATGATTTGAGAAAGTTAGATAAAGATGTGTGTTACTAGCATTTGTGGGTGAAAAGTGAAGACCCAAATGTTGGTTTGTCAGAGCAGAAAGACATTTTTGGTAATCATCATAGTGAAAGAGAGAAACTTTGAGGCTAAGATTAGAAGATTAGATAGAAAACCATGGTATGTTCCTTCTGCCCAATATTATAGACCAGTGCGGAGCTGGATTAGTTCAAGATATTCTTTTTCCTATTCTGTTGCTGTACAATATAAATGGATTCGTGCACCCAAATAGGAGAGGGGAGTGCACTAGATCATTGGAGAGATTGTGGATTTGATGCAATTTTATGCTCCCGTAGGGGGCGATACAGGGGGAGGAGAATTTAGAAGGGGACTTGATCAATGAGTTGGAACTTGTAATATGAGGTAAGGATGTTGAAGCCAATGGAACATGGGGAATCTGAATTAGCAGATTGAGTAGCATTTCTCAAGGCTACACAGATTAGGAGACTTTAGCTTTGTTTTGTGGGAAAACACAAATTATGTTATTGGTCACACCACCTCCCCTTCGCTTCAGCGACTTAATTTTACTGGATTCTTGACTTCAAAAAAGTTCAACCTCTCCTTCCTGTACTTTGTTCTGAACTACCTAAAATGAAAATTCTTTTTCTTGTAGTGCGTCACTAAAAGTTCTCTCCTCATATAAAACCCAAGTCATTTTCCTTCCATTGCAGCAAAACACCAGTCAGGTGTTCAAATCATTTATTTCTTCTCTAATTCTTTATAGATTTAATTTCTCTATCAGTCTTGTCCACAATGGAGATGCTAGGAGAATTTTGTTGATAGAACACCACAATTCTTTGGCTAATATATCCTAAAAAGGGAAAGGATATTCAAATTTTTTGTAGTTTCCTACCCTTAAAGGAAAAAGATTCTCTAATCAGCAATTGCTATTCTTTTCCTGTCCCTCAGATCACGTCACTGTGAATTTTGCAAGAAGTGGTGGCCCTGGAGGTCAGAATGTCAATAAAGGTCAGTTTATTTTCTTGGCTCTGATTGGTTTTGTTTCTACTTTAGAGTTGCCTTTTTCTTTATGAGGTATCATTTCTGTAAATGATAGTGCAGTGAACACGAAGGTTGACATGCGCTTCAATGTTAAAGATGCATATTGGCTAAGCGAGAGAATCAGGGAAAAGATTATGCAAACGGTTTGTTACTTAATTTTCTATTACATATCTTTCCTCTCCTTCCCTCGAATTAAAGTGCCAAGTTTTAGAAAATTTCCTTTCTGTCTTTCAAATCCGCACAACATTGAGATTTGTATGGTTTAGGGACTGGAAAGTACTTGTAAACTGTAGTTATTTATCTCATTTTAATACAATTAATATGGTTTTGTTTTTTAGAGAGAGAAAAAAATCTGAATCAATACAGTATGATCCTGGTACTTGGAAGTGGTTCAAGTGTTAATTAATCTTTCGTCACGATATTACTCGTCTCTTTCTGTCTCTTTCTCGACATGAATATTGCTTCGCTGAACAGGAGAAAAATCGGATCAACAAGGATGGGGAGCTTGTAATTTCATCCACTAAAACTAGAACGCAGAAGTAAACTTCTGTCCTCTTCATCTTCCTTATTTCCTCCCATGTTTGTTCTACCAAAAAGACTTGTTAACTTTTCCTCTCTTCATTTCTTCAGGGGTAACATTGAAGATGCCTTGGAGAAACTTCAGGTACTTGCCTTCCCATAGGATCCTTCTCTTCTTGTCTATTTAATAGCGCATATATGGAAAGTAAAATAGTCTATGGCCATTTCTTGGAAGGTAGATTCTGCATTGTGCTGTAGTTTCTTAACTGAATTTTAATTTCCAATAATGGGGTTGTTTCTATATGAAAATCAGGCAATAATTGATGCTGCTTCTTATGTCCCGCCACCTCCCTCAGAAGAGCAAAAGAAGAAAATTGCTAAGATGTGAGTTCTTTCAACTTCCTTGGCCACTTGATTTCAAAAAGTTTATCTCCCATGATGTATTTAAATGTAAGGTAATACTTCTTGTATTTGTTAAGGGCTGCCATTGGAGAACAGAAACGCCTTAAAAGCAAGAAGGTCCTTTCTGATAAGAAGGCGTTTCGAAGGAGTCGAGGCAGTTGGGATTAACCACATTGCTACTGTAATGTTCATCAACATTACGACTTCGTACTTACCAACATTTCCTACGAAAGATACTAACTTCCCCATTTTGTTTTTTTGATTGATTTCACAGCTTGCTATTTTAATTCAGGAAAATAATCCAAGATTTTCAAAAAGAAACCATACAAAGAAAAACCTGTTAGAAGCAGGGAGATTTGCTTCCTATCACAGGTGATTTCTGGAAATTTGCTAGAAATAGGTATAAGATAACTTATCTTTTTATTTGATTGGTGCATGATATATTTGAAGCACCAGCTTATATTAGATTTTATGGAACTTCCCTTCTGTAGATGCAAGAACATCGACTCACAATGTCTCGTTTCATCAATGTATGTTAAACTAATATCAATTCAGCTGTAGCTTGTTTTTATTAGCTTTGTTGATGTCATGAGCATGCCTAAGTTGGTTCATTTTCAGAAACCACGATATGAAAAATAAGTAATTTTACCAGGAAGTATAGTGTAGTCAGCTAGTTGTATCTGAG

mRNA sequence

GTCGTCGTCTTCCCAGGCTCAAAGCCCTTAGAAGCTGTAGAGGAAGCTCATCGCTGCTAACTCGTTTTCAAGGTACCTTGGAGAAAGAATGGCGGTCATTAGAACCACCACAAACATGATCCTCAGAGAAATCCTTCATTCGCAACCCTATTTTACTCTATCAGTACCCCCACTCTTCCCTGCTACTTTGAACAATCCCAATGCCGCTTTGCGATTCCGGCTGCGTGAGATCAGTTTTGGTCGTGTCATATGTGCCGCTTCGGAGTCGTCCGGTGCCGGAGGAAAGGTATCTTCCCGCCTGTCGCAGGTTCAGCAGCTGTTGCAAGAGGCGGAGGAGCGCGCTCTATCGGCTGACGTCGAACCCGCCCCTAAAATCACTCTCGATCACGTCACTGTGAATTTTGCAAGAAGTGGTGGCCCTGGAGGTCAGAATGTCAATAAAGTGAACACGAAGGTTGACATGCGCTTCAATGTTAAAGATGCATATTGGCTAAGCGAGAGAATCAGGGAAAAGATTATGCAAACGGAGAAAAATCGGATCAACAAGGATGGGGAGCTTGTAATTTCATCCACTAAAACTAGAACGCAGAAGGGTAACATTGAAGATGCCTTGGAGAAACTTCAGGCAATAATTGATGCTGCTTCTTATGTCCCGCCACCTCCCTCAGAAGAGCAAAAGAAGAAAATTGCTAAGATGGCTGCCATTGGAGAACAGAAACGCCTTAAAAGCAAGAAGGTCCTTTCTGATAAGAAGGCGTTTCGAAGGAGTCGAGGCAGTTGGGATTAACCACATTGCTACTCTTGCTATTTTAATTCAGGAAAATAATCCAAGATTTTCAAAAAGAAACCATACAAAGAAAAACCTGTTAGAAGCAGGGAGATTTGCTTCCTATCACAGGTGATTTCTGGAAATTTGCTAGAAATAGGTATAAGATAACTTATCTTTTTATTTGATTGGTGCATGATATATTTGAAGCACCAGCTTATATTAGATTTTATGGAACTTCCCTTCTGTAGATGCAAGAACATCGACTCACAATGTCTCGTTTCATCAATGTATGTTAAACTAATATCAATTCAGCTGTAGCTTGTTTTTATTAGCTTTGTTGATGTCATGAGCATGCCTAAGTTGGTTCATTTTCAGAAACCACGATATGAAAAATAAGTAATTTTACCAGGAAGTATAGTGTAGTCAGCTAGTTGTATCTGAG

Coding sequence (CDS)

ATGGCGGTCATTAGAACCACCACAAACATGATCCTCAGAGAAATCCTTCATTCGCAACCCTATTTTACTCTATCAGTACCCCCACTCTTCCCTGCTACTTTGAACAATCCCAATGCCGCTTTGCGATTCCGGCTGCGTGAGATCAGTTTTGGTCGTGTCATATGTGCCGCTTCGGAGTCGTCCGGTGCCGGAGGAAAGGTATCTTCCCGCCTGTCGCAGGTTCAGCAGCTGTTGCAAGAGGCGGAGGAGCGCGCTCTATCGGCTGACGTCGAACCCGCCCCTAAAATCACTCTCGATCACGTCACTGTGAATTTTGCAAGAAGTGGTGGCCCTGGAGGTCAGAATGTCAATAAAGTGAACACGAAGGTTGACATGCGCTTCAATGTTAAAGATGCATATTGGCTAAGCGAGAGAATCAGGGAAAAGATTATGCAAACGGAGAAAAATCGGATCAACAAGGATGGGGAGCTTGTAATTTCATCCACTAAAACTAGAACGCAGAAGGGTAACATTGAAGATGCCTTGGAGAAACTTCAGGCAATAATTGATGCTGCTTCTTATGTCCCGCCACCTCCCTCAGAAGAGCAAAAGAAGAAAATTGCTAAGATGGCTGCCATTGGAGAACAGAAACGCCTTAAAAGCAAGAAGGTCCTTTCTGATAAGAAGGCGTTTCGAAGGAGTCGAGGCAGTTGGGATTAA

Protein sequence

MAVIRTTTNMILREILHSQPYFTLSVPPLFPATLNNPNAALRFRLREISFGRVICAASESSGAGGKVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD

Homology

[Close]

BLAST of CmoCh16G010890 vs. ExPASy Swiss-Prot
Match: Q8R035 (Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl58 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.1e-22
Identity = 60/135 (44.44%), Postives = 91/135 (67.41%), Query Frame = 0


Query: 96  ITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDG 155
           I LD +++++ RS GPGGQNVNKVN+K ++RF++  A W+ E +R+KI  T KN+INK G
Sbjct: 72  IPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAG 131

Query: 156 ELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEE----QKKKIAKMAAIGEQKR 215
           ELV++S  +R Q  N+ + L+K++ +I  AS VP  PS+E    Q+ +I KM     ++R
Sbjct: 132 ELVLTSESSRYQFRNLAECLQKIRDMIAEASQVPKEPSKEDARLQRLRIEKM----NRER 191

Query: 216 LKSKKVLSDKKAFRR 227
           L+ K++ S  K  RR
Sbjct: 192 LRQKRLNSALKTSRR 202

[Close]

BLAST of CmoCh16G010890 vs. ExPASy Swiss-Prot
Match: B5XAM2 (Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Salmo salar OX=8030 GN=mrpl58 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-21
Identity = 58/131 (44.27%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 96  ITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDG 155
           I +D +TV+++RS GPGGQ+VNKV+TK ++RF+V  A W+ E +R+KI+   KNRINK G
Sbjct: 57  IPVDRLTVSYSRSSGPGGQHVNKVSTKAEVRFHVYTADWIPEDVRQKIILNNKNRINKAG 116

Query: 156 ELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSK 215
           EL+++S ++R+Q+ N+ D ++K+  II  A+  P  PS E     A       ++RLK K
Sbjct: 117 ELLVTSEQSRSQQRNMGDCIQKISDIIAKATEKPHEPSAEDIALRASRLEKRNKERLKQK 176

Query: 216 KVLSDKKAFRR 227
           K+ S  K  RR
Sbjct: 177 KLHSAVKQTRR 187

[Close]

BLAST of CmoCh16G010890 vs. ExPASy Swiss-Prot
Match: Q14197 (Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL58 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.2e-21
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 0


Query: 96  ITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDG 155
           I LD +T+++ RS GPGGQNVNKVN+K ++RF++  A W++E +R+KI  T KN+IN+ G
Sbjct: 72  IPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIAITHKNKINRLG 131

Query: 156 ELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSK 215
           EL+++S  +R Q  N+ D L+K++ +I  AS  P  P++E  K          ++RL+ K
Sbjct: 132 ELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRIENMNRERLRQK 191

Query: 216 KVLSDKKAFRR 227
           ++ S  K  RR
Sbjct: 192 RIHSAVKTSRR 202

[Close]

BLAST of CmoCh16G010890 vs. ExPASy Swiss-Prot
Match: Q3T116 (Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Bos taurus OX=9913 GN=MRPL58 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.9e-20
Identity = 56/135 (41.48%), Postives = 89/135 (65.93%), Query Frame = 0


Query: 96  ITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDG 155
           I +D +T+++ RS GPGGQNVNKVN+K ++RF++  A W++E +R+K+  T KN+IN+ G
Sbjct: 72  IPVDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKMALTHKNKINRAG 131

Query: 156 ELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEE----QKKKIAKMAAIGEQKR 215
           EL+++S  +R Q  N+ D L+K++ +I  AS     PS+E    QK +I  M     ++R
Sbjct: 132 ELILTSEYSRYQFRNLADCLQKIRDMIAEASQPATEPSKEDAALQKLRIENM----NRER 191

Query: 216 LKSKKVLSDKKAFRR 227
           L+ K++ S  K  RR
Sbjct: 192 LRKKRINSAIKTSRR 202

[Close]

BLAST of CmoCh16G010890 vs. ExPASy Swiss-Prot
Match: D2HD32 (Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Ailuropoda melanoleuca OX=9646 GN=MRPL58 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-19
Identity = 53/131 (40.46%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 96  ITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDG 155
           I LD +T+++ RS GPGGQNVNKVN+K ++RF++  A W++E +R+K+    KN+IN+ G
Sbjct: 72  IPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKMAIMHKNKINRSG 131

Query: 156 ELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSK 215
           EL+++S  +R Q  N+ D L+K++ +I  AS  P  PS+E             ++RL+ K
Sbjct: 132 ELILTSECSRYQFRNLADCLQKIRDMIAEASQTPKEPSKEDAALHRIRIENMNRERLRKK 191

Query: 216 KVLSDKKAFRR 227
           ++ S  K  RR
Sbjct: 192 RIHSAIKTGRR 202

[Close]

BLAST of CmoCh16G010890 vs. ExPASy TrEMBL
Match: A0A6J1E5G6 (peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111430949 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 3.9e-120
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MAVIRTTTNMILREILHSQPYFTLSVPPLFPATLNNPNAALRFRLREISFGRVICAASES 60
           MAVIRTTTNMILREILHSQPYFTLSVPPLFPATLNNPNAALRFRLREISFGRVICAASES
Sbjct: 1   MAVIRTTTNMILREILHSQPYFTLSVPPLFPATLNNPNAALRFRLREISFGRVICAASES 60

Query: 61  SGAGGKVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVN 120
           SGAGGKVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVN
Sbjct: 61  SGAGGKVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVN 120

Query: 121 TKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA 180
           TKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA
Sbjct: 121 TKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA 180

Query: 181 IIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD 233
           IIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD
Sbjct: 181 IIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD 232

[Close]

BLAST of CmoCh16G010890 vs. ExPASy TrEMBL
Match: A0A6J1HN26 (peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111465103 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.5e-119
Identity = 231/232 (99.57%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MAVIRTTTNMILREILHSQPYFTLSVPPLFPATLNNPNAALRFRLREISFGRVICAASES 60
           MAVIRTTTNMILREILHSQPYFTLSVPPLFPATLNNPNAALRFRLREISFGRVICAASES
Sbjct: 1   MAVIRTTTNMILREILHSQPYFTLSVPPLFPATLNNPNAALRFRLREISFGRVICAASES 60

Query: 61  SGAGGKVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVN 120
           SGAGGKVSSRLSQVQQLLQEAEERALSAD EPAPKITLDHVTVNFARSGGPGGQNVNKVN
Sbjct: 61  SGAGGKVSSRLSQVQQLLQEAEERALSADDEPAPKITLDHVTVNFARSGGPGGQNVNKVN 120

Query: 121 TKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA 180
           TKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA
Sbjct: 121 TKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA 180

Query: 181 IIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD 233
           IIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD
Sbjct: 181 IIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD 232

[Close]

BLAST of CmoCh16G010890 vs. ExPASy TrEMBL
Match: A0A0A0L715 (RF_PROK_I domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G036420 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.5e-106
Identity = 205/232 (88.36%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MAVIRTTTNMILREILHSQPYFTLSVPPLFPATLNNPNAALRFRLREISFGRVICAASES 60
           MAVIRTTTN+ILREILHSQPYF+LS P +FP  L++PNA LRFRLR+ISFGRV+CAAS+S
Sbjct: 1   MAVIRTTTNIILREILHSQPYFSLSPPSIFPKLLHHPNATLRFRLRDISFGRVLCAASDS 60

Query: 61  SGAGGKVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVN 120
            G+GGKVSSR+SQ+QQLL EAEERAL AD EPAPKITLDHV VNFARSGGPGGQNVNKVN
Sbjct: 61  PGSGGKVSSRMSQMQQLLLEAEERALLADTEPAPKITLDHVIVNFARSGGPGGQNVNKVN 120

Query: 121 TKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA 180
           TKVDMRFNVK+AYWLSERIREKI+QTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA
Sbjct: 121 TKVDMRFNVKEAYWLSERIREKILQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA 180

Query: 181 IIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD 233
           IIDAASYVPPPPSEEQKKKIAK+AAIGEQ+RLKSKKV SDKKAFRRSR SWD
Sbjct: 181 IIDAASYVPPPPSEEQKKKIAKLAAIGEQRRLKSKKVHSDKKAFRRSRNSWD 232

[Close]

BLAST of CmoCh16G010890 vs. ExPASy TrEMBL
Match: A0A1S4DXZ3 (peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490933 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.2e-106
Identity = 206/232 (88.79%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1   MAVIRTTTNMILREILHSQPYFTLSVPPLFPATLNNPNAALRFRLREISFGRVICAASES 60
           MAVIRTT+N+ILREILHSQPYF+LS P +FP  L+NPNA L FRLR+ISFGRV+CAAS+S
Sbjct: 1   MAVIRTTSNIILREILHSQPYFSLSPPSIFPKPLHNPNATLPFRLRDISFGRVLCAASDS 60

Query: 61  SGAGGKVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVN 120
            G GGKVSSRLSQ+QQLL EAEERALSAD EPAPKITLDHV VNFARSGGPGGQNVNKVN
Sbjct: 61  PGTGGKVSSRLSQMQQLLLEAEERALSADSEPAPKITLDHVIVNFARSGGPGGQNVNKVN 120

Query: 121 TKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA 180
           TKVDMRFNVK+AYWLS+RIREKI+QTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA
Sbjct: 121 TKVDMRFNVKEAYWLSDRIREKILQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA 180

Query: 181 IIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD 233
           IIDAASYVPPPPSEEQKKKIAK+AAIGEQKRLKSKKV SDKKAFRRSR SWD
Sbjct: 181 IIDAASYVPPPPSEEQKKKIAKLAAIGEQKRLKSKKVHSDKKAFRRSRNSWD 232

[Close]

BLAST of CmoCh16G010890 vs. ExPASy TrEMBL
Match: A0A5D3D7B4 (Peptidyl-tRNA hydrolase ICT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001310 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.2e-106
Identity = 206/232 (88.79%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1   MAVIRTTTNMILREILHSQPYFTLSVPPLFPATLNNPNAALRFRLREISFGRVICAASES 60
           MAVIRTT+N+ILREILHSQPYF+LS P +FP  L+NPNA L FRLR+ISFGRV+CAAS+S
Sbjct: 1   MAVIRTTSNIILREILHSQPYFSLSPPSIFPKPLHNPNATLPFRLRDISFGRVLCAASDS 60

Query: 61  SGAGGKVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVN 120
            G GGKVSSRLSQ+QQLL EAEERALSAD EPAPKITLDHV VNFARSGGPGGQNVNKVN
Sbjct: 61  PGTGGKVSSRLSQMQQLLLEAEERALSADSEPAPKITLDHVIVNFARSGGPGGQNVNKVN 120

Query: 121 TKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA 180
           TKVDMRFNVK+AYWLS+RIREKI+QTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA
Sbjct: 121 TKVDMRFNVKEAYWLSDRIREKILQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQA 180

Query: 181 IIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD 233
           IIDAASYVPPPPSEEQKKKIAK+AAIGEQKRLKSKKV SDKKAFRRSR SWD
Sbjct: 181 IIDAASYVPPPPSEEQKKKIAKLAAIGEQKRLKSKKVHSDKKAFRRSRNSWD 232

[Close]

BLAST of CmoCh16G010890 vs. TAIR 10
Match: AT1G62850.2 (Class I peptide chain release factor )

HSP 1 Score: 295.4 bits (755), Expect = 3.9e-80
Identity = 171/238 (71.85%), Postives = 190/238 (79.83%), Query Frame = 0


Query: 1   MAVIRTTTNMILREILHSQPYF---TLSVPPLFPATLNNP-NAALRFRLREISFGRVICA 60
           MA IRT TNMILRE +H        + S   L P     P  + +    R +S   V CA
Sbjct: 1   MAAIRTMTNMILREFIHHPLLLHSSSKSCQSLLPCLRLTPLISPIHSNSRLVS---VRCA 60

Query: 61  ASESSGAGG--KVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPGGQ 120
           AS S G+GG  KVSSRLSQVQQ+L EAEERA SA  EP P+ITLD+VT+NFARSGGPGGQ
Sbjct: 61  ASTSGGSGGDRKVSSRLSQVQQMLHEAEERASSAGNEPTPQITLDNVTLNFARSGGPGGQ 120

Query: 121 NVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDA 180
           NVNK+NTKVDMRFNVK+AYWLS+RIREKI+ TEKNRINKDGELVISSTKTRTQKGNI+DA
Sbjct: 121 NVNKLNTKVDMRFNVKNAYWLSDRIREKILLTEKNRINKDGELVISSTKTRTQKGNIDDA 180

Query: 181 LEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD 233
           LEKLQAIIDAASYVPPPPSEEQKKKI K+AA  + KRLKSKKVLSDKK+ RRSRGS+D
Sbjct: 181 LEKLQAIIDAASYVPPPPSEEQKKKIVKLAAKADNKRLKSKKVLSDKKSARRSRGSYD 235

[Close]

BLAST of CmoCh16G010890 vs. TAIR 10
Match: AT1G62850.3 (Class I peptide chain release factor )

HSP 1 Score: 295.4 bits (755), Expect = 3.9e-80
Identity = 171/238 (71.85%), Postives = 190/238 (79.83%), Query Frame = 0


Query: 1   MAVIRTTTNMILREILHSQPYF---TLSVPPLFPATLNNP-NAALRFRLREISFGRVICA 60
           MA IRT TNMILRE +H        + S   L P     P  + +    R +S   V CA
Sbjct: 1   MAAIRTMTNMILREFIHHPLLLHSSSKSCQSLLPCLRLTPLISPIHSNSRLVS---VRCA 60

Query: 61  ASESSGAGG--KVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPGGQ 120
           AS S G+GG  KVSSRLSQVQQ+L EAEERA SA  EP P+ITLD+VT+NFARSGGPGGQ
Sbjct: 61  ASTSGGSGGDRKVSSRLSQVQQMLHEAEERASSAGNEPTPQITLDNVTLNFARSGGPGGQ 120

Query: 121 NVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDA 180
           NVNK+NTKVDMRFNVK+AYWLS+RIREKI+ TEKNRINKDGELVISSTKTRTQKGNI+DA
Sbjct: 121 NVNKLNTKVDMRFNVKNAYWLSDRIREKILLTEKNRINKDGELVISSTKTRTQKGNIDDA 180

Query: 181 LEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD 233
           LEKLQAIIDAASYVPPPPSEEQKKKI K+AA  + KRLKSKKVLSDKK+ RRSRGS+D
Sbjct: 181 LEKLQAIIDAASYVPPPPSEEQKKKIVKLAAKADNKRLKSKKVLSDKKSARRSRGSYD 235

The following BLAST results are available for this feature:

BLAST of CmoCh16G010890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8R035	8.1e-22	44.44	Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl58 P...	[more]
B5XAM2	4.0e-21	44.27	Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Salmo salar OX=8030 GN=mrpl58 PE=...	[more]
Q14197	5.2e-21	41.98	Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL58 PE...	[more]
Q3T116	9.9e-20	41.48	Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Bos taurus OX=9913 GN=MRPL58 PE=2...	[more]
D2HD32	1.7e-19	40.46	Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Ailuropoda melanoleuca OX=9646 GN...	[more]

BLAST of CmoCh16G010890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5G6	3.9e-120	100.00	peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1HN26	2.5e-119	99.57	peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A0A0L715	2.5e-106	88.36	RF_PROK_I domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G036420 P...	[more]
A0A1S4DXZ3	3.2e-106	88.79	peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490...	[more]
A0A5D3D7B4	3.2e-106	88.79	Peptidyl-tRNA hydrolase ICT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of CmoCh16G010890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62850.2	3.9e-80	71.85	Class I peptide chain release factor	[more]
AT1G62850.3	3.9e-80	71.85	Class I peptide chain release factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 71..91
None	No IPR available	GENE3D	3.30.160.20		coord: 87..230 e-value: 3.0E-43 score: 148.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..232
None	No IPR available	PANTHER	PTHR47352:SF1	CLASS I PEPTIDE CHAIN RELEASE FACTOR	coord: 1..232
None	No IPR available	PANTHER	PTHR47352	CLASS I PEPTIDE CHAIN RELEASE FACTOR	coord: 1..232
None	No IPR available	SUPERFAMILY	110916	Peptidyl-tRNA hydrolase domain-like	coord: 94..186
IPR000352	Peptide chain release factor class I	PFAM	PF00472	RF-1	coord: 95..222 e-value: 9.1E-19 score: 67.5
IPR000352	Peptide chain release factor class I	PROSITE	PS00745	RF_PROK_I	coord: 107..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G010890.1	CmoCh16G010890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006415	translational termination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003747	translation release factor activity