CmoCh16G010730 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G010730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionDUF295 domain-containing protein
LocationCmo_Chr16: 7586784 .. 7588022 (-)
RNA-Seq ExpressionCmoCh16G010730
SyntenyCmoCh16G010730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTTAAAAAGCAATATTGCTTATACAACCTCACAAAAAAATAGAACTCATCCCGTTGACTTCAAGTTTTGTTTCAACAAAAGGTGTTGTGGTTTCTCTTTTGGTTGGTTGATCATGTGTGAAGAGACACTCGATCTTATTTTATTCGACCCTTTTTCTGGGACTGTGATTTGTCTTCCTTCCATTATCATAGATAATGAACCTAATTATAATCCAGACCGCGTAGTTAAAGCTATATTAACCAAAGATCCATCATTATATCCAAACGATTATATGGTTGTAGCTATCTATAGTTCATATTCAAGGTTATGCCTTATGAGAGTAAATGATAAGAGTTGGACGTATTCATATCTAGAACCAAATATTCCTTTTAAGGATATTACTGTTTATAGTGATACTTTATATGCTACGGAAAATAATATGATGATTTGGAAAGTTGAAGTTAAGAATAGAGATGATGAAAGTTCTATCACTTTCTATTTCTTTAAATATGGTCCACGCTAAAAGAACTAATGATTTCGCTATATCCTATATTACAGAGTCTTTCAAATGAGAGCTTTGGTTAGTTTTGAGGTCAATATCTGAAAAGGAATTACAATGAGAGACTACTAAGTTTAAAGTCTACAAACTTATTGATGAGCGTGAAAATGGCATGCGAAGGGCCGTAAAGGTGAAGAGTTTAGATGGTGATGCTATGTTTATTGGAGACTCTCAATCCATTTGTGTATCAACCAAGGATTTTCCTAAATGTTTACCAAATCCGATATATTTTATCAATGGTTGTAACAATTATATTCCTAATTTAGTCTAGGATTCATGTATATTCAACATAGAAGATAAAAGATTTGGGAAACATTACATACGAGATCGTGCACACTGGAACTTACCTCAACCCATTTGGATCCTCCCAATCGTATGTTTGAAAGATTTTGATAATTAAGATTCCTATTTATTTGTGTTAGGATATGTTTTATTTTATTTTATTTCTCTTTAGCTGTATTATCCATGGTAATGTAAAACATAAAATATTATGATTTAGAAATTTTGTTGATATGTCGTGTGCATTTAATATACTAATTTAATAGTTTAATTTAATATTTATTCTTAAATATTTTCGACCTACATGTCACTTATAGATATCAAATTTGTTTGTTATAAATATAGATATTTATCAATTTTATCTTTATAGATTTCTACTCGGGCAAATTTATACTTTTGGAGAAAAAAAAATTTTGA

mRNA sequence

ATGGTCTTAAAAAGCAATATTGCTTATACAACCTCACAAAAAAATAGAACTCATCCCGTTGACTTCAAGTTTTGTTTCAACAAAAGGTGTTGTGGTTTCTCTTTTGGTTGGTTGATCATGTGTGAAGAGACACTCGATCTTATTTTATTCGACCCTTTTTCTGGGACTGTGATTTGTCTTCCTTCCATTATCATAGATAATGAACCTAATTATAATCCAGACCGCGTAGTTAAAGCTATATTAACCAAAGATCCATCATTATATCCAAACGATTATATGGTTGTAGCTATCTATAGTTCATATTCAAGGTTATGCCTTATGAGAGTAAATGATAAGAGTTGGACGTATTCATATCTAGAACCAAATATTCCTTTTAAGGATATTACTGTTTATAGTGATACTTTATATGCTACGGAAAATAATATGATGATTTGGAAAGTTGAAGTTAAGAATAGAGATGATGAAATCTACAAACTTATTGATGAGCGTGAAAATGGCATGCGAAGGGCCGTAAAGGTGAAGAGTTTAGATGGTGATGCTATGTTTATTGGAGACTCTCAATCCATTTGTGTATCAACCAAGGATTTTCCTAAATATTTCTACTCGGGCAAATTTATACTTTTGGAGAAAAAAAAATTTTGA

Coding sequence (CDS)

ATGGTCTTAAAAAGCAATATTGCTTATACAACCTCACAAAAAAATAGAACTCATCCCGTTGACTTCAAGTTTTGTTTCAACAAAAGGTGTTGTGGTTTCTCTTTTGGTTGGTTGATCATGTGTGAAGAGACACTCGATCTTATTTTATTCGACCCTTTTTCTGGGACTGTGATTTGTCTTCCTTCCATTATCATAGATAATGAACCTAATTATAATCCAGACCGCGTAGTTAAAGCTATATTAACCAAAGATCCATCATTATATCCAAACGATTATATGGTTGTAGCTATCTATAGTTCATATTCAAGGTTATGCCTTATGAGAGTAAATGATAAGAGTTGGACGTATTCATATCTAGAACCAAATATTCCTTTTAAGGATATTACTGTTTATAGTGATACTTTATATGCTACGGAAAATAATATGATGATTTGGAAAGTTGAAGTTAAGAATAGAGATGATGAAATCTACAAACTTATTGATGAGCGTGAAAATGGCATGCGAAGGGCCGTAAAGGTGAAGAGTTTAGATGGTGATGCTATGTTTATTGGAGACTCTCAATCCATTTGTGTATCAACCAAGGATTTTCCTAAATATTTCTACTCGGGCAAATTTATACTTTTGGAGAAAAAAAAATTTTGA

Protein sequence

MVLKSNIAYTTSQKNRTHPVDFKFCFNKRCCGFSFGWLIMCEETLDLILFDPFSGTVICLPSIIIDNEPNYNPDRVVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRVNDKSWTYSYLEPNIPFKDITVYSDTLYATENNMMIWKVEVKNRDDEIYKLIDERENGMRRAVKVKSLDGDAMFIGDSQSICVSTKDFPKYFYSGKFILLEKKKF
Homology
BLAST of CmoCh16G010730 vs. ExPASy TrEMBL
Match: A0A6J1E6C7 (probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431011 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.4e-84
Identity = 167/251 (66.53%), Postives = 178/251 (70.92%), Query Frame = 0

Query: 13  QKNRTHPVDFKFCFNKRCCGFSFGWLIMCEETLDLILFDPFSGTVICLPSIIIDNEPNYN 72
           +KNRT PVDFKFCFNKRCCG SFGWLIMCEETL+L LF+PFSGTVICLPSI ID+EP+Y 
Sbjct: 82  RKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLNLTLFNPFSGTVICLPSIFIDDEPDYA 141

Query: 73  PDRVVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRVNDKSWTYSYLEPNIPFKDITVYS 132
           PDR+VKAILTKDPSLYPNDYMVVAIYSSYSRLCLMR NDKSWTYSY EPNIPFKDI V S
Sbjct: 142 PDRIVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRANDKSWTYSYPEPNIPFKDINVSS 201

Query: 133 DTLYATENNMMIWKVEVKNRDDE------------------------------------- 192
           DTLYATENNMM+WKVEVKNRDDE                                     
Sbjct: 202 DTLYATENNMMVWKVEVKNRDDESSSISISLKMVHAKRTNDFVVSYITESSKGELLLVLR 261

Query: 193 ---------------IYKLIDERENGMRRAVKVKSLDGDAMFIGDSQSICVSTKDFPK-- 206
                          +YKLIDE EN M RAVK+KSLDGDAMFIGDSQSICVSTK FPK  
Sbjct: 262 SISEEDSQLETTKFKVYKLIDECENDMLRAVKLKSLDGDAMFIGDSQSICVSTKYFPKCL 321

BLAST of CmoCh16G010730 vs. ExPASy TrEMBL
Match: A0A6J1E6A0 (uncharacterized protein LOC111431103 OS=Cucurbita moschata OX=3662 GN=LOC111431103 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 8.4e-77
Identity = 153/249 (61.45%), Postives = 171/249 (68.67%), Query Frame = 0

Query: 13  QKNRTHPVDFKFCFNKRCCGFSFGWLIMCEETLDLILFDPFSGTVICLPSIIIDNEPNYN 72
           +KNRT PVDFKFCFNKRCCG SFGWLIMCEETLDL LF+PFSGTVI LPSI I++EP+Y 
Sbjct: 59  RKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLDLTLFNPFSGTVIRLPSIFIEDEPDYT 118

Query: 73  PDRVVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRVNDKSWTYSYLEPNIPFKDITVYS 132
           PDR+VKAILTKDPSLYPNDYMVVAIY S ++LCLMR NDKSWTY Y EPNIPF D+ VY 
Sbjct: 119 PDRIVKAILTKDPSLYPNDYMVVAIYGSCAKLCLMRSNDKSWTYYYPEPNIPFSDVNVYG 178

Query: 133 DTLYATENNMMIWKVEVKNRDDE------------------------------------- 192
           DT+YA+  +MMIWKVEVK R+DE                                     
Sbjct: 179 DTIYASGVDMMIWKVEVKIRNDESSLISISVRTVHTKSIDDLTRSNITVSSKGELLLVLR 238

Query: 193 ---------------IYKLIDERENGMRRAVKVKSLDGDAMFIGDSQSICVSTKDFPK-- 204
                          +YKL +ERENGMR+A+KVKSLDGDAMFIGDSQSICVSTKDF K  
Sbjct: 239 SISVEETQLETNKFKVYKLTEERENGMRKAIKVKSLDGDAMFIGDSQSICVSTKDFRKCL 298

BLAST of CmoCh16G010730 vs. ExPASy TrEMBL
Match: A0A6J1E923 (probable F-box protein At4g22165 OS=Cucurbita moschata OX=3662 GN=LOC111431007 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 3.4e-62
Identity = 129/253 (50.99%), Postives = 157/253 (62.06%), Query Frame = 0

Query: 14  KNRTHPVDFKFCFNKRCCGFSFGWLIMCEETLDLILFDPFSGTVICLPSIIIDNEPNYNP 73
           +N   PVDFKFCFNKRCCG SFGWLIM +ETL ++LF+PFSGTVI LP +   ++  + P
Sbjct: 83  RNVVRPVDFKFCFNKRCCGSSFGWLIMRDETLGIVLFNPFSGTVIYLPPVATYDDIEWIP 142

Query: 74  DRVVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRVNDKSWTYSYLEPNIPFKDITVYSD 133
             ++KAILTKDPSLYPNDYMVVAI+ +Y RLCL+R NDK+WTY Y  PNIPF DI +  D
Sbjct: 143 GHIIKAILTKDPSLYPNDYMVVAIFGTYKRLCLIRANDKTWTYYYPTPNIPFNDINICGD 202

Query: 134 TLYATENNMMIWKVEVKNRDD--------------------------------------- 193
           TLYATE  + +WKVEV+N +D                                       
Sbjct: 203 TLYATEYYLNVWKVEVENSEDESSSICISVKMVHTIEMGHLVTSYITESSKGELLVVLRI 262

Query: 194 -------------EIYKLIDERENGMRRAVKVKSLDGDAMFIGDSQSICVSTKDFPK--- 209
                        E+YKLI E E+ MRRAV+VKSLDGDA+FIGDSQSICVSTK+FP    
Sbjct: 263 LDSGEEQFETVDFEVYKLIHENEDEMRRAVEVKSLDGDAIFIGDSQSICVSTKEFPGCLP 322

BLAST of CmoCh16G010730 vs. ExPASy TrEMBL
Match: A0A6J1E5P5 (probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431012 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.2e-59
Identity = 121/234 (51.71%), Postives = 148/234 (63.25%), Query Frame = 0

Query: 15  NRTHPVDFKFCFNKRCCGFSFGWLIMCEETLDLILFDPFSGTVICLPSIIIDNEPNYNPD 74
           N    VDFKFCFNKRCCG SFGWLIM +ETL ++LF+PFSG VI LP +   ++  + P 
Sbjct: 84  NIVRSVDFKFCFNKRCCGSSFGWLIMRDETLGIVLFNPFSGAVIYLPPVATYDDIEWIPG 143

Query: 75  RVVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRVNDKSWTYSYLEPNIPFKDITVYSDT 134
            ++KAILTKDPSLYPNDYMVV I+ +Y RLCL+R NDK+WTY Y  PNIPF DI +  DT
Sbjct: 144 HIIKAILTKDPSLYPNDYMVVGIFGTYKRLCLIRANDKTWTYYYPTPNIPFNDINICRDT 203

Query: 135 LYATENNMMIWKVEVKNRDD---------------------------------------- 194
           +YATEN++ +WKVEV+N +D                                        
Sbjct: 204 IYATENDLDVWKVEVQNSEDESSSISISVKMVHTKRIRYIGTAYITESSKGELLVVLRIF 263

Query: 195 ------------EIYKLIDERENGMRRAVKVKSLDGDAMFIGDSQSICVSTKDF 197
                       E+YKLI E E+ +RRAV+VKSLDGDA+FIGDSQSICVSTK+F
Sbjct: 264 NSGEEQFETVDFEVYKLIHENEDELRRAVEVKSLDGDAIFIGDSQSICVSTKEF 317

BLAST of CmoCh16G010730 vs. ExPASy TrEMBL
Match: A0A6J1E5W8 (uncharacterized protein LOC111431008 OS=Cucurbita moschata OX=3662 GN=LOC111431008 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.7e-59
Identity = 122/236 (51.69%), Postives = 148/236 (62.71%), Query Frame = 0

Query: 14  KNRTHPVDFKFCFNKRCCGFSFGWLIMCEETLDLILFDPFSGTVICLPSIIIDNEPNYNP 73
           +N    VDFKFCFNKRC G SFGWLIM +ETL ++LF+PFSGTVI LP +   ++  + P
Sbjct: 83  RNIVRSVDFKFCFNKRCRGSSFGWLIMRDETLGIVLFNPFSGTVIYLPPVATYDDIEWIP 142

Query: 74  DRVVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRVNDKSWTYSYLEPNIPFKDITVYSD 133
             ++KAILTKDPSLYPNDYMVV I+ +Y RLCL+R NDK+WTY Y  PNIPF DI +  D
Sbjct: 143 GHIIKAILTKDPSLYPNDYMVVGIFGTYKRLCLIRANDKTWTYYYPTPNIPFNDINICGD 202

Query: 134 TLYATENNMMIWKVEVKNRDD--------------------------------------- 193
           TLYATE  + +WKVEV+N +D                                       
Sbjct: 203 TLYATEYYLNVWKVEVENSEDESSSICISVKMVHTIEMGHMVTSYITESSKGELLVVLRI 262

Query: 194 -------------EIYKLIDERENGMRRAVKVKSLDGDAMFIGDSQSICVSTKDFP 198
                        E+YKLI E E+ MRRAV++KSLDGDA+FIGDSQSICVSTK+FP
Sbjct: 263 LDSGEEQFETVDFEVYKLIHENEDEMRRAVEIKSLDGDAIFIGDSQSICVSTKEFP 318

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E6C72.4e-8466.53probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431011 P... [more]
A0A6J1E6A08.4e-7761.45uncharacterized protein LOC111431103 OS=Cucurbita moschata OX=3662 GN=LOC1114311... [more]
A0A6J1E9233.4e-6250.99probable F-box protein At4g22165 OS=Cucurbita moschata OX=3662 GN=LOC111431007 P... [more]
A0A6J1E5P51.2e-5951.71probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431012 P... [more]
A0A6J1E5W82.7e-5951.69uncharacterized protein LOC111431008 OS=Cucurbita moschata OX=3662 GN=LOC1114310... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005174Domain unknown function DUF295PFAMPF03478DUF295coord: 171..197
e-value: 4.1E-5
score: 23.1
NoneNo IPR availablePANTHERPTHR44259OS07G0183000 PROTEIN-RELATEDcoord: 23..153
NoneNo IPR availablePANTHERPTHR44259:SF18UBIQUITIN-PROTEIN LIGASEcoord: 155..197
NoneNo IPR availablePANTHERPTHR44259:SF18UBIQUITIN-PROTEIN LIGASEcoord: 23..153
NoneNo IPR availablePANTHERPTHR44259OS07G0183000 PROTEIN-RELATEDcoord: 155..197

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G010730.1CmoCh16G010730.1mRNA