CmoCh16G010590 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G010590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	replication factor C subunit 2
Location	Cmo_Chr16: 7436229 .. 7443521 (+)
RNA-Seq Expression	CmoCh16G010590
Synteny	CmoCh16G010590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGGCGCGAAGTGGGAAGGGCCGAGTTTCTCCTTCAAATTGTTCTACCCATCCTCGAACAGCCACATTCATCTGTGCAAGGACAAAGAAAATCCATGGCGTCTTCTTCAGGAAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAAGGTCGCTGACATTGTAGGCAACGAAGAAGCAGTTTCTCGGCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATTTCATATTATCTGTACTTCTCCATCGCTTTTTCCTCCCGGAATTTTCACTGTTCAATTTACATTGCCGCCATTGATGTCGTAGTTCAGTTATGGGACATAGGGTTGCTTAATTTTTAAACTTAGTTATGTGAAGTAGGAAATCATGCAGCTTGAACATTTTTTTCATTCTTTGAACTGTTTTCATGGGCACCGGGGGATTTGGGAACTAATAAGGCTCGAATTTTATCCTGTTTTTTATTATTTTTGGGGGGTTTTAGTGTACTGCAGTGAAATATACTAAAAAATTCATTCACAATTGGTAGGGGGCAAGTGAAATTCAAAAGGTTCTAATCATGTGGGATGAGGTTTTTCCTTTTGTCTTGCTATTGGTGATACTCTGTTGCTATATATTTGTTTTCTAGGGTCCGCCTGGAACTGGGAAGACAACCAGTATTCTGGCTCTTGCTCACGAGCTTTTGGGACCAAATTACAAGGATGGTGTTCTGGAGCTTAATGCATCAGATGAAAGGTGGCACCTTCTATGCTTTTTATGCTTCAAACATTTCCAATGTTACTGGATCTGTATGTTTTTCTAACCTGTGTTCTTGTTTAGGGGAATCGACGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGACGAAGCTGACAGGTAGGTTTCAATGGACATATGCTAAGAAACATGGACACTCTCTTTTGTATAGTGTTTTTAGCATTCTTGTTTATTTTTATTTTGTCCAATTTGGAACACACATGGAACACATCTGGTCGTGTAGGGGACACGTCGTTGTACAAAAATTGATCAAGAATTTAGAAAGAAAAAATGTTTAATCCATCTCATTACTTCATGTCCTTTGCTCAAACCATTACTTACCTTATTATAATCAGCCCTAAAATTTCATGAAGAAATTGTGGGGGGAGGGACACACTACTCACTGTTTCAAGCACATTCATTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTGTTAAATTCACGTATCTTGTCTATTTTGAAGTGTCAAATATGTTTGTAGTCTCATTTGAACTGAAAAAGATGTCTGTCTGTCTACCCCTACAAAAGAAGAAGAAAATGAAAGAGGAAATAGAAACCACAGTAACAAAGCTGCTGAGCTCCGGAACCTTTGAACATGCACATCTTCTATAAAAAAAAAAATATATATTCCCAATGTGTCCATGTTGTACATTTGTATAAATTAACAAATTGACATGTCGGTGTCCGTGTCATAATCATGTTTCATGTCTGTGTTCGTACTTGTTTCTTAGGGTATATGACACATCTCATAGTCATAGGTTATATGATCTAACCATATCTAAAAGATTGTTTTCTGCGTGCAAGTTCCACTTTCGTGTCACTATTTGGTCCTAAATGGAACCAAGAAGTTCTTTCTCGGGAGATTTTCTTTGTTTCCTCCTCCCCTTCCTTTTCGCATTTGTATCCCTCACCTAATTTTATTTTCTTTTGCTTTGCTGTTCATTTTCTGACTTTGGGTTCCATTATTTATTTATTACTTTTGGGGATGGTTATGATTATGGAAATAATCCAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCGAACACAACACGTTTTGCACTTGCATGTAATACCTCCTCAAAAATTATCGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTACTTCAAGCAGAAAAGGTATCAATTATTTGTGATAATGATTAGAGATGCATTCCAGACTACATTTCTGTTGTTATAAATACAATCACTCTGCTAAATTTAATTGTTCTTATAAACTTAATGCCGCTTGATTATCTTCTGAAGAAAGTATCACTTTATTGAAAGGCTGAAAGCATCACTATGTTTAGATCTCATGCCATTGTTTTATTATGCATTGTCTCATTGTTCTTTTGTGCAATTTTTTTATGGAAATGGCTAGCTTGTTTAGTAATCATTGGTCATATTTTTAAGCTGTATTGTTCAAAAGGATAAAGAGCCTTGTTCCTCTCAAAACTACTTGTGTAGGCCTGAATTTCTCATAGATATGTGTCTTAAAATTGCACCTAAACAAAGTAAAATGTTAATATTGCTGATTGTTCATGTTAGAAACTTGTGGAAGGGAAGGTTCGGCACTTGTCATGTTGCCTTCTTTTCAGTACTCTCTCACTTTTTGTAGCGTTCCCTTCGTGTATCTCCTATATGCATATATATTAGGGCTATAAGTTAGTCAATTGGTGTTGATTTCATTAAATGGAAACCGATAGGTTTATGGGGTGCAAGCAACCAACTAATCCTAGTTTGTTAGTTTTCCTTTTTTTAAAAAAATAAAATAAAAATAAATAAATAATTAAAAAATCATCATTATTATTTTAATAATCAATGAACATAATATTAAAAATCATTTTTTTTTAGAAAGATATTCGTTTTTTTTCTTTCGGGAGCCCATTAGATATTTACCTAAACCAGTAGGTAGGTCCTTGAGTAGATCTCACGTTAGCCCCAAGACGAGTAAATGCTTGAGCTATTTTTTAGGTTTCTTAGTATATGTTATAACTTTTGAAGGATTTAACTCCAAGATTTTGTATTATATCTTATTTTATTTTAGGCTATGAGAATACAATTTTCCGTTCTCTCAAACTCTTCGGTGGGTGGTAGGCATCCATCAATAGGCTAGCTATCAAAGGGGTAGACACAAGTTTTGAAGGGATTATATTTCTTTCAACTACTAAATTAAGCTCTTGGGTCTCCTTGGTTGGATGTGAGCTTAGCTAACTTCCGACCTACCATCATGGTCTCCCTTTTGGGGGTAATTTGTGGAGTATGATCTTATGGAGCCCTGTTTTAGACTAGGTTCATAAAATGTTTCTCCTTGGAAACATGCTTTTTTCTCAAGGTGGGTCGGCTCACCCTTATCCAGTCTGTGCTGAGTGTTATCTCCAATTACTTCTTATCCCTTTTTCAAGATCTCGGTCCAATCTAAAGTGTTTGACTAGCTTAATCTGGAAGCATAAAAGCCCAAAGAAAATCCCAGTTTTCTTTCGTCCTTGGCCTTTTGAAGCCTAAATACTGATGATAGGCTGCAAAGGAAGTTCAAAGACTGGTCTCTTCTTCCTTCTAGATGCAGATTATGTTGGCAACTTATATTGCACTGATCTATCAAGGCACATTGAGATATTCTAGCGGGTCTTCTGGGGATTTCGTTTAGTATGCCAATTAGAATTGATGATTGGCACTTGGAGGGTTTGAATGCTTGGAATCTGAAAGGTAAAGCTTTGGTGATAGGCAGTTGCGTCTTTAGGGCTCTTTTGTGGCTTTTGTCGAAGGAAAGAAATGCGTGTTCGTTTGAATATAAGTCCTTACATTTTGATTCTTTTTGTAACTTTATATACAAAACACGGGCTCTTGGTGAATTGCTTTACACAAAAAGTTGTTTTGTAATTATAGTATGTTGGTGATTATCAACGATCGGCAGGCTCTTTTAAAGTAGTTGGTGAGGGGAGGGGTTCTCTCAACCCCAGCCCTTAGTGTGTTCTTTCTTTTTCAATGAGTATATCCCCTTTGAGGTTTCTTATCCCAAAAATAATAATAAAAAAGAAACATTATTATTGTTATTGTTATGAAAAAATTTCTAGATGCTCTCGGTTATTTACTCATTAGTCCAAAACTTACTCGAAAGTACTGAAAAGTTGCACTCTTAAAAATTGGATTTGTTGTTCCTTTAATAGGCTTGAAAATTAAGAACAAGAGAATCAAGAAACTTGTAGGGTCGTGTTCAAGATATCAGCAAGCTATCGAGGGAGTCAGATGTCTGGAGCAAAAGAAAAACCGGGCATGTATATTGAGACATTTCGAAAGCACCCCTTTATCTTGAGCATTAGCATGGTTCAACCCAAATGAAGACAAGGATGTATTAAATTGGATCGTCTTTCCCTTGAGCCTAAATCGATCTGCCCTTTCATGGCTAAATTGGCTGAATGAGTTATCTTAATCCATAAGAGGTTTCACTCAGCTATACTGGGCTTACACCTAAAAATTTGCAAGTATGACCAAGGAGACATTCAACATGTTTAATTTCCTCCAAGAAGAAAATGGAAGCTTGAGAATGAAACGCTAAAACAAAGCAATTCATGTAACAGACCAAGCCCATTGCGAGTAGATATTGTCCTGTTTGGGCTTTCTCCTCAAGATTTTAAAACGCGTCTACTAGAGAGAGGTTTCCACACTTATAAGGAATGTTTTGTTTCCCTTTCCAACTGATGTGGGATCTCACAATCCACCCCCTTAGGGGTAAGCGTCTTTGCTGGCACATTGCCCGGTGTCTAGCTTTGATACCATTTGTAACAATTCAAGTCCACCTCTAGCAGAAATTGTTCTCTTTGGGCTTTCCCTTCTGAGTTTCCCCTCAAGATTTTAAAACGCGTCCACTAGAGAGAGGTTTCTACACCTTATAAGGAAATACTTTGTTCTCCTCTCCAACCGATGTGTGATCTCACAATTCATGAGGTGGTCAACGACCATGTAATAACTGCTAACTTGTGTCTTAAAGTGCAGCTTTTTTCCAAGTATGGTTCTCTTCCACTCCTTGCTTAGTTCCCTACCAACACGGAGAAACTATATGTTTCTGGCCTTGGAGCAAGAAAATCAAGCCTTTATTAGATCAGCCTGAAAGCGTGGGACAAAACAGCAGCCTAGTAAAGGCAGTGGTTTAGACAAACCATATAGAAAATGAAATATAGGAGCCACCAAAAATGACAAACACCATCTGATGCACTCACCTCAGCTTTTTATATGCTAACCTTCATTGTCTAGCAAAAGGTTAAAGAGTACCTTAGTCGGCCAATATCGTGAGATGCGAACCATTCTTGCAAAACAGGGTCCTACTACAAATATCATAGAGGCATGGATATAAAACAAACGATTGCCGTGTTTTGAAGCGAGAAGGGTTTGGGGCATCAATGTTACGTGTTATGCTAAATGACTCATGAACACTTCGATGTGCTATGGAGCTGTCAGTTTGCTATGAAAATTTAGAATAAATTCTTGGCTCGTTACACGTTAGCTTGGTCGGCTCCTAGTAGAGGCTTAGATTATGGTTCACTTCAACGTCTCCCTTTGTGTGTTCACCACATATTATTTTGTTTAATTTGCATTTGTCTTTTATCCGTAACAATAGCTCGAGCTTTTTTTAAAATTGTTTCGTTTTGATTTGTGGACTCCCATGTTTGGTAATATGTTCAAGTAGTTTAGAAATGATAATTGTTTGAAAATATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACCGCTGATGGTGATATGAGGCAAGCGCTGAATAATTTGCAAGCAACATATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTCCTATCACATGTTTTTATCTTTCCTTATCTTAGACTCAGAAAACTTCATCTTATGACATGCTTGTTGATTCACTAGGTTTGCGATCAACCGCATCCGCTGCATGTTAAGAACATGGTGCGTAACGTGCTTGAAGGTAAATTTGACGATGCTTGTGCAGCTCTGAAGCAACTCCACGACATGGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATTATTAAGAACTATGATATGGCTGAGTATCTGAAACTGGAATTCATGAAGGTATGCTAAAACCTGAGCTATCGTTTGACCATACCAGATTAGCTAGTACTCACTCTTTTGATGAATTGCAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGGTCTTATCTGCAGCTATGCGGTCTTTTGGCCAAGCTTTCCATTGTTCGTGAGACTGCGAAAGCGCCATGA

mRNA sequence

GAGGGCGCGAAGTGGGAAGGGCCGAGTTTCTCCTTCAAATTGTTCTACCCATCCTCGAACAGCCACATTCATCTGTGCAAGGACAAAGAAAATCCATGGCGTCTTCTTCAGGAAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAAGGTCGCTGACATTGTAGGCAACGAAGAAGCAGTTTCTCGGCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATTTCATATTATCTGGTCCGCCTGGAACTGGGAAGACAACCAGTATTCTGGCTCTTGCTCACGAGCTTTTGGGACCAAATTACAAGGATGGTGTTCTGGAGCTTAATGCATCAGATGAAAGGGGAATCGACGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGACGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCGAACACAACACGTTTTGCACTTGCATGTAATACCTCCTCAAAAATTATCGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTACTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACCGCTGATGGTGATATGAGGCAAGCGCTGAATAATTTGCAAGCAACATATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCGCTGCATGTTAAGAACATGGTGCGTAACGTGCTTGAAGGTAAATTTGACGATGCTTGTGCAGCTCTGAAGCAACTCCACGACATGGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATTATTAAGAACTATGATATGGCTGAGTATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGGTCTTATCTGCAGCTATGCGGTCTTTTGGCCAAGCTTTCCATTGTTCGTGAGACTGCGAAAGCGCCATGA

Coding sequence (CDS)

ATGGCGTCTTCTTCAGGAAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAAGGTCGCTGACATTGTAGGCAACGAAGAAGCAGTTTCTCGGCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATTTCATATTATCTGGTCCGCCTGGAACTGGGAAGACAACCAGTATTCTGGCTCTTGCTCACGAGCTTTTGGGACCAAATTACAAGGATGGTGTTCTGGAGCTTAATGCATCAGATGAAAGGGGAATCGACGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGACGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCGAACACAACACGTTTTGCACTTGCATGTAATACCTCCTCAAAAATTATCGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTACTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACCGCTGATGGTGATATGAGGCAAGCGCTGAATAATTTGCAAGCAACATATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCGCTGCATGTTAAGAACATGGTGCGTAACGTGCTTGAAGGTAAATTTGACGATGCTTGTGCAGCTCTGAAGCAACTCCACGACATGGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATTATTAAGAACTATGATATGGCTGAGTATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGGTCTTATCTGCAGCTATGCGGTCTTTTGGCCAAGCTTTCCATTGTTCGTGAGACTGCGAAAGCGCCATGA

Protein sequence

MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP

Homology

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BLAST of CmoCh16G010590 vs. ExPASy Swiss-Prot
Match: Q9CAM7 (Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1)

HSP 1 Score: 598.2 bits (1541), Expect = 5.7e-170
Identity = 296/331 (89.43%), Postives = 316/331 (95.47%), Query Frame = 0


Query: 2   ASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKT 61
           +SSS S+   Y+ PWVEKYRPSKV DIVGNE+AVSRLQVIARDGNMPN ILSGPPGTGKT
Sbjct: 3   SSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 62

Query: 62  TSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 121
           TSILALAHELLG NYK+ VLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 63  TSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 122

Query: 122 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 181
           DSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+ILGRL+
Sbjct: 123 DSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLL 182

Query: 182 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 241
           VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF FVNQ+NVFKVCDQPHPLHV
Sbjct: 183 VVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHV 242

Query: 242 KNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 301
           KN+VRNVLE KFD AC  LKQL+D+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 243 KNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 302

Query: 302 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333
           HMRICDGVGSYLQLCGLLAKLSIVRETAKAP
Sbjct: 303 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of CmoCh16G010590 vs. ExPASy Swiss-Prot
Match: Q7XRX1 (Replication factor C subunit 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC4 PE=2 SV=2)

HSP 1 Score: 581.3 bits (1497), Expect = 7.2e-165
Identity = 282/330 (85.45%), Postives = 315/330 (95.45%), Query Frame = 0


Query: 2   ASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKT 61
           +SS+   + +YD+PWVEKYRP++VAD+ GN +AV+RLQ IARDGNMPN ILSGPPGTGKT
Sbjct: 5   SSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTGKT 64

Query: 62  TSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 121
           TSIL+LAHELLGP+Y++ VLELNASD+RG+DVVRNKIKMFAQKKVTL PGRHK+VILDEA
Sbjct: 65  TSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEA 124

Query: 122 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 181
           DSMT+GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL+DQEILGRLM
Sbjct: 125 DSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLM 184

Query: 182 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 241
           +V+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQ+NVFKVCDQPHPLHV
Sbjct: 185 IVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHV 244

Query: 242 KNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 301
           KNMV+NVL+GKFD+AC+ALKQL+D+GYSPTDIITTLFR+IKNYDMAEYLKLE +KETGFA
Sbjct: 245 KNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETGFA 304

Query: 302 HMRICDGVGSYLQLCGLLAKLSIVRETAKA 332
           HMRICDGVGS+LQL GLLAK ++VRETAKA
Sbjct: 305 HMRICDGVGSFLQLSGLLAKFALVRETAKA 334

[Close]

BLAST of CmoCh16G010590 vs. ExPASy Swiss-Prot
Match: Q05B83 (Replication factor C subunit 2 OS=Bos taurus OX=9913 GN=RFC2 PE=2 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 8.6e-126
Identity = 217/320 (67.81%), Postives = 263/320 (82.19%), Query Frame = 0


Query: 3   SSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKTT 62
           S +  S+  Y++PWVEKYRP K+ +IVGNE+ VSRL+V AR+GN+PN I++GPPGTGKTT
Sbjct: 23  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82

Query: 63  SILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122
           SIL LA  LLGP  KD VLELNAS++RGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEAD
Sbjct: 83  SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 142

Query: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182
           SMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +IL RL+ 
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLS 202

Query: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVK 242
           V++ EKV Y  +GLEAIIFTA GDMRQALNNLQ+TYSGF F+N +NVFKVCD+PHPL VK
Sbjct: 203 VIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVK 262

Query: 243 NMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302
            M+++ +    D+A   L  L  +GYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 263 EMIQHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 322

Query: 303 MRICDGVGSYLQLCGLLAKL 323
           M+I +GV S LQ+ GLLA+L
Sbjct: 323 MKIAEGVNSLLQMAGLLARL 342

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BLAST of CmoCh16G010590 vs. ExPASy Swiss-Prot
Match: Q641W4 (Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.1e-125
Identity = 212/315 (67.30%), Postives = 263/315 (83.49%), Query Frame = 0


Query: 8   SSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKTTSILAL 67
           ++  Y++PWVEKYRP K+ +IVGNE+ VSRL+V AR+GN+PN I++GPPGTGKTTSIL L
Sbjct: 25  TTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCL 84

Query: 68  AHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTG 127
           A  LLGP  KD VLELNAS++RGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEADSMT G
Sbjct: 85  ARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 144

Query: 128 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAE 187
           AQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD ++L RLM V++ E
Sbjct: 145 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKE 204

Query: 188 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNMVRN 247
           KVPY  +GLEAIIFTA GDMRQALNNLQ+T+SGF ++N +NVFKVCD+PHPL VK M+++
Sbjct: 205 KVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQH 264

Query: 248 VLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 307
            ++   D+A   L  L  +GYSP D+I  +FR+ K + MAEYLKLEF+KE G+ HM++ +
Sbjct: 265 CVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAE 324

Query: 308 GVGSYLQLCGLLAKL 323
           GV S LQ+ GLLA+L
Sbjct: 325 GVNSLLQMAGLLARL 339

[Close]

BLAST of CmoCh16G010590 vs. ExPASy Swiss-Prot
Match: P35250 (Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3)

HSP 1 Score: 450.7 bits (1158), Expect = 1.5e-125
Identity = 216/320 (67.50%), Postives = 264/320 (82.50%), Query Frame = 0


Query: 3   SSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKTT 62
           S +  S+  Y++PWVEKYRP K+ +IVGNE+ VSRL+V AR+GN+PN I++GPPGTGKTT
Sbjct: 25  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 84

Query: 63  SILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122
           SIL LA  LLGP  KD +LELNAS++RGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEAD
Sbjct: 85  SILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 144

Query: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182
           SMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +IL RLM 
Sbjct: 145 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMN 204

Query: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVK 242
           V++ E+VPY  +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N +NVFKVCD+PHPL VK
Sbjct: 205 VIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 264

Query: 243 NMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302
            M+++ +    D+A   L  L  +GYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 265 EMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 324

Query: 303 MRICDGVGSYLQLCGLLAKL 323
           M+I +GV S LQ+ GLLA+L
Sbjct: 325 MKIAEGVNSLLQMAGLLARL 344

[Close]

BLAST of CmoCh16G010590 vs. ExPASy TrEMBL
Match: A0A6J1E9R2 (replication factor C subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111431154 PE=3 SV=1)

HSP 1 Score: 661.8 bits (1706), Expect = 1.5e-186
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0


Query: 1   MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK 60
           MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK
Sbjct: 1   MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK 60

Query: 61  TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120
           TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
Sbjct: 61  TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180
           ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180

Query: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240
           MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH
Sbjct: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240

Query: 241 VKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
           VKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300

Query: 301 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333
           AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332

[Close]

BLAST of CmoCh16G010590 vs. ExPASy TrEMBL
Match: A0A6J1HQ24 (replication factor C subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111465064 PE=3 SV=1)

HSP 1 Score: 652.5 bits (1682), Expect = 9.4e-184
Identity = 330/333 (99.10%), Postives = 331/333 (99.40%), Query Frame = 0


Query: 1   MASSSG-SSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTG 60
           MASSSG SSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTG
Sbjct: 1   MASSSGSSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR
Sbjct: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPL 240
           LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPL
Sbjct: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPL 240

Query: 241 HVKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKNMVRNVLEGKFDDACAALKQL+DMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKE G
Sbjct: 241 HVKNMVRNVLEGKFDDACAALKQLYDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKEIG 300

Query: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333
           FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of CmoCh16G010590 vs. ExPASy TrEMBL
Match: A0A6J1DH57 (replication factor C subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020446 PE=3 SV=1)

HSP 1 Score: 640.2 bits (1650), Expect = 4.8e-180
Identity = 318/332 (95.78%), Postives = 328/332 (98.80%), Query Frame = 0


Query: 1   MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK 60
           MASSS  +SSSYDMPWVEK+RP+KVADIVGNE+AVSRLQVIARDGNMPN ILSGPPGTGK
Sbjct: 1   MASSSSGNSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 60

Query: 61  TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120
           TTSILALAHELLGPNYK+GVLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
Sbjct: 61  TTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180
           ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180

Query: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240
           MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH
Sbjct: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240

Query: 241 VKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
           VKN+VRNVLEGKFDDACA LKQL+D+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300

Query: 301 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333
           AHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332

[Close]

BLAST of CmoCh16G010590 vs. ExPASy TrEMBL
Match: A0A1S3BLV0 (replication factor C subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490969 PE=3 SV=1)

HSP 1 Score: 636.0 bits (1639), Expect = 9.1e-179
Identity = 317/332 (95.48%), Postives = 328/332 (98.80%), Query Frame = 0


Query: 1   MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK 60
           MASSSG SSS+YD+PWVEKYRP+KV DIVGNE+AVSRLQVIARDGNMPN ILSGPPGTGK
Sbjct: 1   MASSSG-SSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 60

Query: 61  TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120
           TTSILALAHELLGPNYK+GVLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
Sbjct: 61  TTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180
           ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180

Query: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240
           MVV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH
Sbjct: 181 MVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240

Query: 241 VKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
           VKN+VRNVLEGKFDDACA LKQL+D+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300

Query: 301 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333
           AHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of CmoCh16G010590 vs. ExPASy TrEMBL
Match: A0A0A0L763 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038730 PE=3 SV=1)

HSP 1 Score: 631.3 bits (1627), Expect = 2.2e-177
Identity = 314/332 (94.58%), Postives = 327/332 (98.49%), Query Frame = 0


Query: 1   MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK 60
           MASSSG SSS+YD+PWVEKYRP+KV DIVGNE+AVSRLQVIARDGNMPN ILSGPPGTGK
Sbjct: 1   MASSSG-SSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 60

Query: 61  TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120
           TTSILALAHELLGPNYK+GVLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
Sbjct: 61  TTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180
           ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180

Query: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240
           MVV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLH
Sbjct: 181 MVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLH 240

Query: 241 VKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
           VKN+VRNVLEGKFDDAC  L+QL+D+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300

Query: 301 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333
           AHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of CmoCh16G010590 vs. TAIR 10
Match: AT1G63160.1 (replication factor C 2 )

HSP 1 Score: 598.2 bits (1541), Expect = 4.0e-171
Identity = 296/331 (89.43%), Postives = 316/331 (95.47%), Query Frame = 0


Query: 2   ASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKT 61
           +SSS S+   Y+ PWVEKYRPSKV DIVGNE+AVSRLQVIARDGNMPN ILSGPPGTGKT
Sbjct: 3   SSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 62

Query: 62  TSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 121
           TSILALAHELLG NYK+ VLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 63  TSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 122

Query: 122 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 181
           DSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+ILGRL+
Sbjct: 123 DSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLL 182

Query: 182 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 241
           VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF FVNQ+NVFKVCDQPHPLHV
Sbjct: 183 VVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHV 242

Query: 242 KNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 301
           KN+VRNVLE KFD AC  LKQL+D+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 243 KNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 302

Query: 302 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333
           HMRICDGVGSYLQLCGLLAKLSIVRETAKAP
Sbjct: 303 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of CmoCh16G010590 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 209.5 bits (532), Expect = 4.0e-54
Identity = 127/312 (40.71%), Postives = 169/312 (54.17%), Query Frame = 0


Query: 15  PWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKTTSILALAHELLGP 74
           PWVEKYRP +V D+   EE V  L    +  + P+ +  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 75  N-YKDGVLELNASDERGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 134
             YK  VLELNASD+RGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 135 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQA 194
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 195 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNMVR 254
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 255 NVLE-GKFDDACAALKQLHDMGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHM 314
              + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 309

Query: 315 RICDGVGSYLQL 316
           R+ DG   YLQL
Sbjct: 310 RLVDGADEYLQL 321

[Close]

BLAST of CmoCh16G010590 vs. TAIR 10
Match: AT1G77470.1 (replication factor C subunit 3 )

HSP 1 Score: 201.8 bits (512), Expect = 8.4e-52
Identity = 115/331 (34.74%), Postives = 187/331 (56.50%), Query Frame = 0


Query: 6   GSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKTTSIL 65
           G    S   PWVEKYRP  + D+  + + +  +  +  +  +P+ +L GPPGTGKT++IL
Sbjct: 31  GPPPQSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTIL 90

Query: 66  ALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQ-KKVTLPPGRHKVVILDEADSM 125
           A+A +L GP Y++ +LELNASD+RGIDVVR +I+ FA  +  +L     K+V+LDEAD+M
Sbjct: 91  AVARKLYGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAM 150

Query: 126 TTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVL 185
           T  AQ ALRR +E Y+ +TRFAL  N  +KII  +QSRC   RF+ L    +  RL  V+
Sbjct: 151 TKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVI 210

Query: 186 QAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG--------FRFVNQDNVFKVCDQP 245
           +AE++     GL A++  ++GDMR+ALN LQ+T+           + + +++V+     P
Sbjct: 211 EAERLVVSDCGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNP 270

Query: 246 HPLHVKNMVRNVLEGKFDDACAALKQLHD-MGYSPTDIITTLFRIIKNYDMAEYLKLEFM 305
            P  ++ +   +L   FD+    + ++    G +  DI+  +   I    M   ++++ +
Sbjct: 271 LPKDIEQISHWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLI 330

Query: 306 KETGFAHMRICDGVGSYLQLCGLLAKLSIVR 327
            +      R+  G    LQL  +++  +  R
Sbjct: 331 NDLADIEYRLSFGCNDKLQLGAIISTFTHAR 361

[Close]

BLAST of CmoCh16G010590 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 201.1 bits (510), Expect = 1.4e-51
Identity = 124/311 (39.87%), Postives = 166/311 (53.38%), Query Frame = 0


Query: 15  PWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKTTSILALAHELLGP 74
           PWVEKYRP +V D+   EE V  L    +  + P+ +  GPPGTGKTT+ LA+AH+L   
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLF-- 69

Query: 75  NYKDGVLELNASDERGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTTG 134
               GVLELNASD+RGI+VVR KIK FA        ++   P    K++ILDEADSMT  
Sbjct: 70  ----GVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 129

Query: 135 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAE 194
           AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 189

Query: 195 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNMVRN 254
            +    E L  +   + GD+R+A+  LQ+    F                PL V N +  
Sbjct: 190 GLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFT 249

Query: 255 VLE-GKFDDACAALKQLHDMGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHMR 314
             + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       R
Sbjct: 250 ACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKR 309

Query: 315 ICDGVGSYLQL 316
           + DG   YLQL
Sbjct: 310 LVDGADEYLQL 314

[Close]

BLAST of CmoCh16G010590 vs. TAIR 10
Match: AT1G21690.2 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 200.7 bits (509), Expect = 1.9e-51
Identity = 125/312 (40.06%), Postives = 165/312 (52.88%), Query Frame = 0


Query: 15  PWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKTTSILALAHELLGP 74
           PWVEKYRP +V D+   EE              P+ +  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 75  N-YKDGVLELNASDERGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 134
             YK  VLELNASD+RGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 135 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQA 194
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 195 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNMVR 254
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 255 NVLE-GKFDDACAALKQLHDMGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHM 314
              + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 309

Query: 315 RICDGVGSYLQL 316
           R+ DG   YLQL
Sbjct: 310 RLVDGADEYLQL 309

The following BLAST results are available for this feature:

BLAST of CmoCh16G010590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAM7	5.7e-170	89.43	Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1	[more]
Q7XRX1	7.2e-165	85.45	Replication factor C subunit 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC4 ...	[more]
Q05B83	8.6e-126	67.81	Replication factor C subunit 2 OS=Bos taurus OX=9913 GN=RFC2 PE=2 SV=1	[more]
Q641W4	1.1e-125	67.30	Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1	[more]
P35250	1.5e-125	67.50	Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3	[more]

BLAST of CmoCh16G010590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E9R2	1.5e-186	100.00	replication factor C subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111431154 PE=...	[more]
A0A6J1HQ24	9.4e-184	99.10	replication factor C subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111465064 PE=3 ...	[more]
A0A6J1DH57	4.8e-180	95.78	replication factor C subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020446 PE...	[more]
A0A1S3BLV0	9.1e-179	95.48	replication factor C subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349096...	[more]
A0A0A0L763	2.2e-177	94.58	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038730 PE=3 SV...	[more]

BLAST of CmoCh16G010590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63160.1	4.0e-171	89.43	replication factor C 2	[more]
AT1G21690.1	4.0e-54	40.71	ATPase family associated with various cellular activities (AAA)	[more]
AT1G77470.1	8.4e-52	34.74	replication factor C subunit 3	[more]
AT1G21690.4	1.4e-51	39.87	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.2	1.9e-51	40.06	ATPase family associated with various cellular activities (AAA)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 46..178 e-value: 1.5E-12 score: 57.7
None	No IPR available	GENE3D	1.20.272.10		coord: 236..328 e-value: 3.8E-30 score: 105.7
None	No IPR available	GENE3D	1.10.8.60		coord: 172..235 e-value: 2.4E-20 score: 73.8
None	No IPR available	PANTHER	PTHR11669:SF5	REPLICATION FACTOR C SUBUNIT 2	coord: 8..330
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 8..330
None	No IPR available	CDD	cd00009	AAA	coord: 29..166 e-value: 5.17568E-26 score: 99.5279
None	No IPR available	CDD	cd18140	HLD_clamp_RFC	coord: 171..233 e-value: 2.74302E-19 score: 78.3397
IPR013748	Replication factor C, C-terminal	PFAM	PF08542	Rep_fac_C	coord: 236..321 e-value: 1.1E-21 score: 77.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 7..171 e-value: 1.2E-57 score: 196.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 12..234
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 51..168 e-value: 9.9E-15 score: 55.1
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 235..326

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G010590.1	CmoCh16G010590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003689	DNA clamp loader activity