CmoCh16G010540 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G010540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	scarecrow-like protein 18
Location	Cmo_Chr16: 7391292 .. 7394265 (+)
RNA-Seq Expression	CmoCh16G010540
Synteny	CmoCh16G010540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCATGTGGTGGATTTTGATATCATTCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGAGCGGTTTGCTTCTCCTATGCTTCGTATTACTGCCATTGGTCTTGATCTTACCTCTCTTCTTAAGACGGGTGATAGGCTTTCCAAATTTGCTCATTCACTTGGCTTGAGGTTTCATTTTCATCCTCTTCTTCTTCTCAATGATCATGACGTTGACCGTCTTGTCCCCGCCGCTCTCACGCTCTTCCCCGATGAAGCGCTCGCCGTCAATTGCGTTCTCTACTTGCACAGGTACTTAACTTACCATTCCAACTCATAAGAAAGTATTTAGCTCGTATGTAACTGTCCAACTCACTGCTAGCTGATATTGTTCTCTTTGAGCTTTCTATTTTAGGCTTTCCCTCAAAGTTTTTAAAACGTGTCTTCTAGGGAGAGGTTTCCATACCCTTGTAAAAATACTTCGTTCTCCCCCTAATCGATGTGGGATCTCACAATCCACCCCCTTTAGAGACCAGCGTTAAAACGTGTCTTCTACTGAGAAATTTTCACACCCTTATAATGAATGTTTCGTTTTCCTCCCCAATCGATGCGAGATGTCACAATCCACCCATCTTTAGAGACCAGCGTCCTCGCTGACACTTGTTTCCCTCTCCAATCGATGTGGACCTCCCAATCCACCACCTTTGGAGTCCAGCGTCCTTGTTAGCACACTGCCTCGTATCCACCTCCTTTAATGCTCAACCTTCTCGCTGGCACATAGCTTGGTGTCTAATCTGATATCATTTGTAACAACACAACTTCATCGCCAGCGGATATTGTTCTTTTTGGGCTTTCTCTTTTGAACTTCCTATAAAAAGTTTTTAAAACGTGTCTTATAGAAGGAAATTTTCACACCCTTATAAAAAAAAAATGCTTAATTCTCATCCCTAACTGATGTAGGATCTCATATGGTAAATTTACAGACTTTTGAAGGACGATGTTCGGCGATTGCTTCATAAAATAAAGGCTTTGAATCCCAAAGTGGTGACCATAGCTGAAAAGGAAGCAAATTTCAACCACCCTTTATTCATGCAAAGATTTCTAGAGGCATTGAATCATTACTCCCTAATATTTGATTCATTGGAAGCAACTATGCCTCAAAATAGCAAAGAGAGGCTAGAAGTGGAGAAAGTTTGGTTTGGTAGGGAAATAGACGACGTCGTTTCCGAGGAAGGGAACAAGAGAAGGCAACGCCATGAAAGGTATGAATCATGGGAAATAATGCTTAAAAGTTTAGGGTTTTCTAATATTCCTTTGAGCCCTTTTGCCCTCTCACAAGCCAAACTCCTCCTAAGGCTTCATTACCCCTCCGAAGGCTACCATCTTCAAACCCTTCATGATTCCCTTTCTCTTGGTTGGCAAAATAGACCCCTTTTTTCAGTCTCTTCGTGGCATTGAGAAACAAAACCCAATGAAATGGCTCTCATTTTCAATACCCACCAAGAAAAATGAAGAAATTTGCAAGAACAATGGGAATTTGGGTGATTTCAAGAAAACCCACCAAGAAAAATGAAGGAATTTGCAAGAACAATCAAGGAATTTGCAAGAACAATGAAGAAATTTGCAAGAACAATGGGAATTTGAGTGATTTCAAGAAACCCCACCAAGAAAAATGAAGGAATTTGCAAGAACAATGAAGGAATTTGCAAGAACAATGGGAATTTGAGTGATTTCAAGAAACCCCACCAACAAAATTTGAGTCTTTTACGGTTTGCATGAAAATTATTAGCCTATGAAATTTTCCCTATCAATTAATTGTGTAAAGCTAGAATCTTTCAGCTGTTCTTCCAAAGGGAAAGCTGGAACCGACAAATATTGAATATGTAATATTATTATTTTTTTGGGTACTAAATAAAATCTTTGTTTCTTTTTTTAATTTGATTATAATTTGCATACCCATATGATAAATCAAACAAAAAACATCATTTTCATTAACATGGTCGCTTGTCTCCTTATCTTTTCCTTCTTTTAAGGTAATAACAATGACTAATTAAGCTTCTCTTTCTTGTTTTATCCATAATAAATATATAAAATTAGCTTAATTAATGGTTAATTAAGCTAATTGGGTTGATTTGTTCCCTTACATTCCATTGTTTCCATCAAGATTAAGGTGAGGCTTCGAGAAGGGAATCCTTTCTTTATAGCCATTATTATATTTGTATGTATTGATTACTTTTTTTTTGGTAGTGCACCAAGTTTGAATTTTTATTTAATTTTTGAACCAGAAATTCTGCCTTATGTCCCCTCAACAAAACCATCAAAGTTCTAAAAATGGAGCTTTTCGTGCTCCCTTTGCCACCCTCTAGGTATCCCTTAACTCTCATGTCCTATGGATGTCGGAGGACCATTTTAGGACACTTGATCCCTTCTTCTTGCCCTTTAAGAGGGTATATCACCTTTGTCTTTTTTTGTTTAACCATATATTAAAGTATATTCCTACATGTTCTTTATAAGCTTTTAATATCAACCTAACCCGATCTTTCGAATTTAGTAACGGGTACTCGAGCAAAACGTAAAGGGTTCAATTCCGTATCTAGTTCACTTTATAGATCTTTTGAGCTAATTGAATCCAACCCTTTACAAAGCTAAAGGATTTATGTGCTCCATAGTTTCTTGATCGTTAGTTGACTCATTTGGTCTCGACACTAATTTTCGAATCCGAATTATAACGGCCCAGACCAATTGCTAACAGATATTGTCTTCTTTGAGTTTTCTTTTTCCTAGAGAGATGTTTTCACACCCTTATAAAGGATGTTTCATTCTCCTCCCCAACCAATGTGGGATCTCATAATCCACCCCCCTTCAGGTCCAGTGTTCTTGCTGGCACACCGCCTTGTGTCTACCCCCTTCGGGGAATAGCCTCCTCGATGGCACATCGTTTGGCGTTTGGTTCTGATACCATTTGTAATGGCTTGGCCCAGCGCTAG

mRNA sequence

ATGGTTCATGTGGTGGATTTTGATATCATTCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGAGCGGTTTGCTTCTCCTATGCTTCGTATTACTGCCATTGGTCTTGATCTTACCTCTCTTCTTAAGACGGGTGATAGGCTTTCCAAATTTGCTCATTCACTTGGCTTGAGGTTTCATTTTCATCCTCTTCTTCTTCTCAATGATCATGACGTTGACCGTCTTGTCCCCGCCGCTCTCACGCTCTTCCCCGATGAAGCGCTCGCCGTCAATTGCGTTCTCTACTTGCACAGACTTTTGAAGGACGATGTTCGGCGATTGCTTCATAAAATAAAGGCTTTGAATCCCAAAGTGGTGACCATAGCTGAAAAGGAAGCAAATTTCAACCACCCTTTATTCATGCAAAGATTTCTAGAGGCATTGAATCATTACTCCCTAATATTTGATTCATTGGAAGCAACTATGCCTCAAAATAGCAAAGAGAGGCTAGAAGTGGAGAAAGTTTGGTTTGGTAGGGAAATAGACGACGTCGTTTCCGAGGAAGGGAACAAGAGAAGGCAACGCCATGAAAGGTCCAGTGTTCTTGCTGGCACACCGCCTTGTGTCTACCCCCTTCGGGGAATAGCCTCCTCGATGGCACATCGTTTGGCGTTTGGTTCTGATACCATTTGTAATGGCTTGGCCCAGCGCTAG

Coding sequence (CDS)

ATGGTTCATGTGGTGGATTTTGATATCATTCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGAGCGGTTTGCTTCTCCTATGCTTCGTATTACTGCCATTGGTCTTGATCTTACCTCTCTTCTTAAGACGGGTGATAGGCTTTCCAAATTTGCTCATTCACTTGGCTTGAGGTTTCATTTTCATCCTCTTCTTCTTCTCAATGATCATGACGTTGACCGTCTTGTCCCCGCCGCTCTCACGCTCTTCCCCGATGAAGCGCTCGCCGTCAATTGCGTTCTCTACTTGCACAGACTTTTGAAGGACGATGTTCGGCGATTGCTTCATAAAATAAAGGCTTTGAATCCCAAAGTGGTGACCATAGCTGAAAAGGAAGCAAATTTCAACCACCCTTTATTCATGCAAAGATTTCTAGAGGCATTGAATCATTACTCCCTAATATTTGATTCATTGGAAGCAACTATGCCTCAAAATAGCAAAGAGAGGCTAGAAGTGGAGAAAGTTTGGTTTGGTAGGGAAATAGACGACGTCGTTTCCGAGGAAGGGAACAAGAGAAGGCAACGCCATGAAAGGTCCAGTGTTCTTGCTGGCACACCGCCTTGTGTCTACCCCCTTCGGGGAATAGCCTCCTCGATGGCACATCGTTTGGCGTTTGGTTCTGATACCATTTGTAATGGCTTGGCCCAGCGCTAG

Protein sequence

MVHVVDFDIIHGVQWPPLMQALAERFASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLRFHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVRRLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFGREIDDVVSEEGNKRRQRHERSSVLAGTPPCVYPLRGIASSMAHRLAFGSDTICNGLAQR

Homology

[Close]

BLAST of CmoCh16G010540 vs. ExPASy Swiss-Prot
Match: Q9ZWC5 (Scarecrow-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=SCL18 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 5.9e-49
Identity = 102/206 (49.51%), Postives = 141/206 (68.45%), Query Frame = 0


Query: 2   VHVVDFDIIHGVQWPPLMQALAERFAS-----PMLRITAIGLDLTSLLKTGDRLSKFAHS 61
           +H++D DI  G+QWPPLMQALAER ++     P LRIT  G D+T L +TGDRL++FA S
Sbjct: 179 LHILDLDISQGLQWPPLMQALAERSSNPSSPPPSLRITGCGRDVTGLNRTGDRLTRFADS 238

Query: 62  LGLRFHFHPLLLLNDHDVDRLVP---AALTLFPDEALAVNCVLYLHRLLKDD---VRRLL 121
           LGL+F FH L+++ +     L+     AL+    E +AVNCV +LH++  DD   +   L
Sbjct: 239 LGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETIAVNCVHFLHKIFNDDGDMIGHFL 298

Query: 122 HKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKV 181
             IK+LN ++VT+AE+EAN     F+ RF EA++HY  IFDSLEAT+P NS+ERL +E+ 
Sbjct: 299 SAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYMAIFDSLEATLPPNSRERLTLEQR 358

Query: 182 WFGREIDDVVSEEGNKRRQRHERSSV 197
           WFG+EI DVV+ E  +R+QRH R  +
Sbjct: 359 WFGKEILDVVAAEETERKQRHRRFEI 384

[Close]

BLAST of CmoCh16G010540 vs. ExPASy Swiss-Prot
Match: A0A145P7T2 (GRAS family protein RAM1 OS=Lotus japonicus OX=34305 GN=RAM1 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.0e-37
Identity = 89/193 (46.11%), Postives = 121/193 (62.69%), Query Frame = 0


Query: 2   VHVVDFDIIHGVQWPPLMQALAER-FASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLR 61
           VHV+D DI+ G QWP  MQALA R   +P LRIT +G  + S+ +TG  L++ AHSL + 
Sbjct: 441 VHVIDLDILQGYQWPTFMQALAARPGGAPFLRITGVGPCIDSVRETGRCLTELAHSLRIP 500

Query: 62  FHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVRRLLHKIKALNPKV 121
           F FHP+       ++ L P        EALAVN V  LHR+    +  LL  I+   P +
Sbjct: 501 FEFHPV----GEQLEDLKPHMFNRRVGEALAVNTVNRLHRVPGSHLGNLLSMIRDQAPNI 560

Query: 122 VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFGREIDDVV 181
           VT+ E+EA+ N P F+ RFLEAL++YS IFDSL+AT P  S +R +VE+  F  EI ++V
Sbjct: 561 VTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPESAQRAKVEQYIFAPEIRNIV 620

Query: 182 SEEGNKRRQRHER 194
           + EG +R +RHER
Sbjct: 621 ACEGAERIERHER 629

[Close]

BLAST of CmoCh16G010540 vs. ExPASy Swiss-Prot
Match: G7L166 (GRAS family protein RAM1 OS=Medicago truncatula OX=3880 GN=RAM1 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.2e-37
Identity = 89/193 (46.11%), Postives = 121/193 (62.69%), Query Frame = 0


Query: 2   VHVVDFDIIHGVQWPPLMQALAER-FASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLR 61
           VHV+D DI+ G QWP  MQALA R   +P LRIT +G  + S+ +TG  L++ AHSL + 
Sbjct: 422 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPCIESVRETGRCLTELAHSLRIP 481

Query: 62  FHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVRRLLHKIKALNPKV 121
           F FHP+       ++ L P        EALAVN V  LHR+  + +  LL  I+   P +
Sbjct: 482 FEFHPV----GEQLEDLKPHMFNRRVGEALAVNTVNRLHRVPGNHLGNLLSMIRDQAPNI 541

Query: 122 VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFGREIDDVV 181
           VT+ E+EA+ N P F+ RFLEAL++YS IFDSL+AT P  S  R +VE+  F  EI ++V
Sbjct: 542 VTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPVESAPRAKVEQYIFAPEIRNIV 601

Query: 182 SEEGNKRRQRHER 194
           + EG +R +RHER
Sbjct: 602 ACEGEERIERHER 610

[Close]

BLAST of CmoCh16G010540 vs. ExPASy Swiss-Prot
Match: A0A0M4FMK2 (GRAS family protein RAM1 OS=Petunia hybrida OX=4102 GN=RAM1 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.4e-36
Identity = 88/193 (45.60%), Postives = 121/193 (62.69%), Query Frame = 0


Query: 2   VHVVDFDIIHGVQWPPLMQALAER-FASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLR 61
           VH++D DI+ G QWP  MQALA R   +P LRIT +G    ++ +TG  L++ AHSL + 
Sbjct: 443 VHIIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPSPEAVRETGRCLTELAHSLHVP 502

Query: 62  FHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVRRLLHKIKALNPKV 121
           F FHP+       ++ L P        EALAVN V  LHR+  + +  LL  I+   P +
Sbjct: 503 FEFHPV----GEQLEDLKPHMFNRRVGEALAVNSVNRLHRVPVNCIGNLLAMIRDQAPNI 562

Query: 122 VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFGREIDDVV 181
           VTI E+EA+ N P F+ RFLEAL++YS IFDSL+AT P +S +R ++E+  F  EI ++V
Sbjct: 563 VTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSSQRAKLEQYIFAPEIMNIV 622

Query: 182 SEEGNKRRQRHER 194
           S EG +R  RHER
Sbjct: 623 SCEGPERVVRHER 631

[Close]

BLAST of CmoCh16G010540 vs. ExPASy Swiss-Prot
Match: Q84MM9 (Protein MONOCULM 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MOC1 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.9e-35
Identity = 90/212 (42.45%), Postives = 121/212 (57.08%), Query Frame = 0


Query: 2   VHVVDFDIIHGVQWPPLMQALAER----FASPMLRITAIGLDLTSLLKTGDRLSKFAHSL 61
           VH++D D +HGVQWPPL+QA+AER       P +R+T  G D  +LL+TG+RL  FA S+
Sbjct: 158 VHILDLDAVHGVQWPPLLQAIAERADPALGPPEVRVTGAGADRDTLLRTGNRLRAFARSI 217

Query: 62  GLRFHFHPLLL----LNDHDV------------DRLVPAALTLFPDEALAVNCVLYLHRL 121
            L FHF PLLL       H V                   L   PDE LAVNCV++LH L
Sbjct: 218 HLPFHFTPLLLSCATTAPHHVAGTSTGAAAAASTAAAATGLEFHPDETLAVNCVMFLHNL 277

Query: 122 L-KDDVRRLLHKIKALNPKVVTIAEKEA------NFNHPLFMQRFLEALNHYSLIFDSLE 181
              D++   L  +KA++P VVTIAE+EA        +     +R   A++HYS +F++LE
Sbjct: 278 AGHDELAAFLKWVKAMSPAVVTIAEREAGGGGGGGDHIDDLPRRVGVAMDHYSAVFEALE 337

Query: 182 ATMPQNSKERLEVEKVWFGREIDDVVSEEGNK 187
           AT+P  S+ERL VE+   GREI+  V   G +
Sbjct: 338 ATVPPGSRERLAVEQEVLGREIEAAVGPSGGR 369

[Close]

BLAST of CmoCh16G010540 vs. ExPASy TrEMBL
Match: A0A6J1E928 (scarecrow-like protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111431013 PE=3 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.3e-104
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MVHVVDFDIIHGVQWPPLMQALAERFASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLR 60
           MVHVVDFDIIHGVQWPPLMQALAERFASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLR
Sbjct: 106 MVHVVDFDIIHGVQWPPLMQALAERFASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLR 165

Query: 61  FHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVRRLLHKIKALNPKV 120
           FHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVRRLLHKIKALNPKV
Sbjct: 166 FHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVRRLLHKIKALNPKV 225

Query: 121 VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFGREIDDVV 180
           VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFGREIDDVV
Sbjct: 226 VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFGREIDDVV 285

Query: 181 SEEGNKRRQRHER 194
           SEEGNKRRQRHER
Sbjct: 286 SEEGNKRRQRHER 298

[Close]

BLAST of CmoCh16G010540 vs. ExPASy TrEMBL
Match: A0A6J1L833 (scarecrow-like protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111500180 PE=3 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.8e-102
Identity = 189/193 (97.93%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MVHVVDFDIIHGVQWPPLMQALAERFASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLR 60
           MVHVVDFDIIHGVQWPPLMQALAERFASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLR
Sbjct: 107 MVHVVDFDIIHGVQWPPLMQALAERFASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLR 166

Query: 61  FHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVRRLLHKIKALNPKV 120
           FHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDD+ RLLHKIKALNPKV
Sbjct: 167 FHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDLWRLLHKIKALNPKV 226

Query: 121 VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFGREIDDVV 180
           VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERL+VE+VWFGREIDDVV
Sbjct: 227 VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLDVEQVWFGREIDDVV 286

Query: 181 SEEGNKRRQRHER 194
           SEEGNKRRQRHER
Sbjct: 287 SEEGNKRRQRHER 299

[Close]

BLAST of CmoCh16G010540 vs. ExPASy TrEMBL
Match: A0A6J1DHA7 (scarecrow-like protein 18 OS=Momordica charantia OX=3673 GN=LOC111020441 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 5.5e-90
Identity = 169/193 (87.56%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MVHVVDFDIIHGVQWPPLMQALAERFASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLR 60
           +VHVVDFDI+HGVQWPPLMQALAERF +PMLRITA G DL SL KTGDRLSKFA SLGLR
Sbjct: 156 IVHVVDFDIMHGVQWPPLMQALAERFPTPMLRITATGRDLNSLHKTGDRLSKFAQSLGLR 215

Query: 61  FHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVRRLLHKIKALNPKV 120
           F FHPLLLLNDHD  RL+PAALTLFPDE LAVNCVLYLHRL KDD+R LLHKIKALNPKV
Sbjct: 216 FQFHPLLLLNDHDHHRLIPAALTLFPDETLAVNCVLYLHRLSKDDLRLLLHKIKALNPKV 275

Query: 121 VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFGREIDDVV 180
           VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEAT+P NS+ERL VE+VWFGREIDDVV
Sbjct: 276 VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATLPPNSRERLAVEQVWFGREIDDVV 335

Query: 181 SEEGNKRRQRHER 194
           S EG KRRQRHER
Sbjct: 336 SGEGTKRRQRHER 348

[Close]

BLAST of CmoCh16G010540 vs. ExPASy TrEMBL
Match: A0A6J1GFR5 (scarecrow-like protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111453746 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.2e-89
Identity = 166/192 (86.46%), Postives = 179/192 (93.23%), Query Frame = 0


Query: 2   VHVVDFDIIHGVQWPPLMQALAERFASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLRF 61
           +HVVDFDI+HGVQWPPLMQALAERF SPMLRI+AIG DL  L KTGDRLSKFAHSLGLRF
Sbjct: 138 IHVVDFDIMHGVQWPPLMQALAERFPSPMLRISAIGRDLNFLHKTGDRLSKFAHSLGLRF 197

Query: 62  HFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVRRLLHKIKALNPKVV 121
            FHPLLLLNDHD  RL+PAALTLFPDEALA NCVLYLH+L+K+D+R LLHKIKALNPKVV
Sbjct: 198 QFHPLLLLNDHDHHRLIPAALTLFPDEALAFNCVLYLHKLVKEDLRVLLHKIKALNPKVV 257

Query: 122 TIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFGREIDDVVS 181
           TIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEAT+P NS+ERL VE+VWFGREIDDVVS
Sbjct: 258 TIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATLPPNSRERLAVEQVWFGREIDDVVS 317

Query: 182 EEGNKRRQRHER 194
            EGNKR+QR+ER
Sbjct: 318 REGNKRKQRYER 329

[Close]

BLAST of CmoCh16G010540 vs. ExPASy TrEMBL
Match: A0A6J1KWG3 (scarecrow-like protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111498819 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 7.9e-89
Identity = 164/192 (85.42%), Postives = 179/192 (93.23%), Query Frame = 0


Query: 2   VHVVDFDIIHGVQWPPLMQALAERFASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLRF 61
           +HVVDFDI+HGVQWPPLMQALAERF SPMLRI+AIG DL  L KTGDRLSKFAHSLGLRF
Sbjct: 138 IHVVDFDIMHGVQWPPLMQALAERFPSPMLRISAIGRDLNFLHKTGDRLSKFAHSLGLRF 197

Query: 62  HFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVRRLLHKIKALNPKVV 121
            FHPLLLLNDHD  RL+PA+LTLFPDEALA NCVLYLH+L+K+D++ LLHKIKALNPKVV
Sbjct: 198 QFHPLLLLNDHDHHRLIPASLTLFPDEALAFNCVLYLHKLVKEDLQVLLHKIKALNPKVV 257

Query: 122 TIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFGREIDDVVS 181
           TIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEAT+P NS+ERL VE+VWFGREIDDVVS
Sbjct: 258 TIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATLPPNSRERLAVEQVWFGREIDDVVS 317

Query: 182 EEGNKRRQRHER 194
            EGNKR+QR+ER
Sbjct: 318 REGNKRKQRYER 329

[Close]

BLAST of CmoCh16G010540 vs. TAIR 10
Match: AT1G55580.1 (GRAS family transcription factor )

HSP 1 Score: 195.7 bits (496), Expect = 4.2e-50
Identity = 102/206 (49.51%), Postives = 141/206 (68.45%), Query Frame = 0


Query: 2   VHVVDFDIIHGVQWPPLMQALAERFAS-----PMLRITAIGLDLTSLLKTGDRLSKFAHS 61
           +H++D DI  G+QWPPLMQALAER ++     P LRIT  G D+T L +TGDRL++FA S
Sbjct: 179 LHILDLDISQGLQWPPLMQALAERSSNPSSPPPSLRITGCGRDVTGLNRTGDRLTRFADS 238

Query: 62  LGLRFHFHPLLLLNDHDVDRLVP---AALTLFPDEALAVNCVLYLHRLLKDD---VRRLL 121
           LGL+F FH L+++ +     L+     AL+    E +AVNCV +LH++  DD   +   L
Sbjct: 239 LGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETIAVNCVHFLHKIFNDDGDMIGHFL 298

Query: 122 HKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKV 181
             IK+LN ++VT+AE+EAN     F+ RF EA++HY  IFDSLEAT+P NS+ERL +E+ 
Sbjct: 299 SAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYMAIFDSLEATLPPNSRERLTLEQR 358

Query: 182 WFGREIDDVVSEEGNKRRQRHERSSV 197
           WFG+EI DVV+ E  +R+QRH R  +
Sbjct: 359 WFGKEILDVVAAEETERKQRHRRFEI 384

[Close]

BLAST of CmoCh16G010540 vs. TAIR 10
Match: AT1G63100.1 (GRAS family transcription factor )

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-32
Identity = 78/198 (39.39%), Postives = 117/198 (59.09%), Query Frame = 0


Query: 2   VHVVDFDIIHGVQWPPLMQALAERFASP-MLRITAIGLDLTSLLKTGDRLSKFAHSLGLR 61
           VH++DFDI  G+QWP   Q+LA R   P  +RIT IG     L +TGDRL  FA ++ L+
Sbjct: 386 VHIIDFDIKQGLQWPSFFQSLASRINPPHHVRITGIGESKLELNETGDRLHGFAEAMNLQ 445

Query: 62  FHFHPLLLLNDHDVDRLVPAALTLF---PDEALAVNCVLYLHRLLKDD----VRRLLHKI 121
           F FHP+       VDRL    L +      E++AVNCV+ +H+ L D     +R  L  I
Sbjct: 446 FEFHPV-------VDRLEDVRLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAIRDFLGLI 505

Query: 122 KALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFG 181
           ++ NP  + +AE+EA  N      R   +L +YS +FD++   +  +S  R++VE++ FG
Sbjct: 506 RSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEEMLFG 565

Query: 182 REIDDVVSEEGNKRRQRH 192
           REI ++V+ EG+ R++RH
Sbjct: 566 REIRNIVACEGSHRQERH 576

[Close]

BLAST of CmoCh16G010540 vs. TAIR 10
Match: AT3G03450.1 (RGA-like 2 )

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-31
Identity = 83/202 (41.09%), Postives = 125/202 (61.88%), Query Frame = 0


Query: 2   VHVVDFDIIHGVQWPPLMQALAER-FASPMLRITAIGLDLT----SLLKTGDRLSKFAHS 61
           VHV+D  +  G+QWP LMQALA R    P  R+T IG   T    SL + G +L++FA +
Sbjct: 286 VHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQN 345

Query: 62  LGLRFHFHPLLLLNDHDVDRLVPAALTLFPD-EALAVNCVLYLHRLL--KDDVRRLLHKI 121
           +G+ F F  L   +  D++   P      P+ E L VN V  LHRLL     + +LL+ +
Sbjct: 346 MGVEFEFKGLAAESLSDLE---PEMFETRPESETLVVNSVFELHRLLARSGSIEKLLNTV 405

Query: 122 KALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEVEKVWFG 181
           KA+ P +VT+ E+EAN N  +F+ RF EAL++YS +FDSLE +    S++R+ + +V+ G
Sbjct: 406 KAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRV-MSEVYLG 465

Query: 182 REIDDVVSEEGNKRRQRHERSS 196
           R+I +VV+ EG+ R +RHE ++
Sbjct: 466 RQILNVVAAEGSDRVERHETAA 483

[Close]

BLAST of CmoCh16G010540 vs. TAIR 10
Match: AT5G48150.1 (GRAS family transcription factor )

HSP 1 Score: 130.2 bits (326), Expect = 2.2e-30
Identity = 86/232 (37.07%), Postives = 131/232 (56.47%), Query Frame = 0


Query: 2   VHVVDFDIIHGVQWPPLMQALAER-FASPMLRITAIGLDLTS-------LLKTGDRLSKF 61
           VH++DF I  G QW  L+QA A R    P +RIT I  D+TS       L   G+RL+K 
Sbjct: 228 VHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGID-DMTSAYARGGGLSIVGNRLAKL 287

Query: 62  AHSLGLRFHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVR------ 121
           A    + F F+ + +     V  + P  L + P EALAVN    LH +  + V       
Sbjct: 288 AKQFNVPFEFNSVSV----SVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRD 347

Query: 122 RLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEV 181
           RLL  +K+L+PKVVT+ E+E+N N   F  RF+E +N+Y+ +F+S++ T+P++ K+R+ V
Sbjct: 348 RLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINV 407

Query: 182 EKVWFGREIDDVVSEEGNKRRQRHE-----RSSV-LAGTPPCVYPLRGIASS 214
           E+    R++ ++++ EG  R +RHE     RS   +AG  P  YPL  + +S
Sbjct: 408 EQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTP--YPLSPLVNS 452

[Close]

BLAST of CmoCh16G010540 vs. TAIR 10
Match: AT5G48150.2 (GRAS family transcription factor )

HSP 1 Score: 130.2 bits (326), Expect = 2.2e-30
Identity = 86/232 (37.07%), Postives = 131/232 (56.47%), Query Frame = 0


Query: 2   VHVVDFDIIHGVQWPPLMQALAER-FASPMLRITAIGLDLTS-------LLKTGDRLSKF 61
           VH++DF I  G QW  L+QA A R    P +RIT I  D+TS       L   G+RL+K 
Sbjct: 228 VHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGID-DMTSAYARGGGLSIVGNRLAKL 287

Query: 62  AHSLGLRFHFHPLLLLNDHDVDRLVPAALTLFPDEALAVNCVLYLHRLLKDDVR------ 121
           A    + F F+ + +     V  + P  L + P EALAVN    LH +  + V       
Sbjct: 288 AKQFNVPFEFNSVSV----SVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRD 347

Query: 122 RLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLEV 181
           RLL  +K+L+PKVVT+ E+E+N N   F  RF+E +N+Y+ +F+S++ T+P++ K+R+ V
Sbjct: 348 RLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINV 407

Query: 182 EKVWFGREIDDVVSEEGNKRRQRHE-----RSSV-LAGTPPCVYPLRGIASS 214
           E+    R++ ++++ EG  R +RHE     RS   +AG  P  YPL  + +S
Sbjct: 408 EQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTP--YPLSPLVNS 452

The following BLAST results are available for this feature:

BLAST of CmoCh16G010540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZWC5	5.9e-49	49.51	Scarecrow-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=SCL18 PE=2 SV=1	[more]
A0A145P7T2	4.0e-37	46.11	GRAS family protein RAM1 OS=Lotus japonicus OX=34305 GN=RAM1 PE=1 SV=1	[more]
G7L166	5.2e-37	46.11	GRAS family protein RAM1 OS=Medicago truncatula OX=3880 GN=RAM1 PE=1 SV=1	[more]
A0A0M4FMK2	3.4e-36	45.60	GRAS family protein RAM1 OS=Petunia hybrida OX=4102 GN=RAM1 PE=2 SV=1	[more]
Q84MM9	4.9e-35	42.45	Protein MONOCULM 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MOC1 PE=2 SV=1	[more]

BLAST of CmoCh16G010540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E928	2.3e-104	100.00	scarecrow-like protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111431013 PE=3 SV=...	[more]
A0A6J1L833	2.8e-102	97.93	scarecrow-like protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111500180 PE=3 SV=1	[more]
A0A6J1DHA7	5.5e-90	87.56	scarecrow-like protein 18 OS=Momordica charantia OX=3673 GN=LOC111020441 PE=3 SV...	[more]
A0A6J1GFR5	1.2e-89	86.46	scarecrow-like protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111453746 PE=3 SV=...	[more]
A0A6J1KWG3	7.9e-89	85.42	scarecrow-like protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111498819 PE=3 SV=1	[more]

BLAST of CmoCh16G010540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55580.1	4.2e-50	49.51	GRAS family transcription factor	[more]
AT1G63100.1	2.3e-32	39.39	GRAS family transcription factor	[more]
AT3G03450.1	2.0e-31	41.09	RGA-like 2	[more]
AT5G48150.1	2.2e-30	37.07	GRAS family transcription factor	[more]
AT5G48150.2	2.2e-30	37.07	GRAS family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 1..194 e-value: 4.6E-66 score: 223.3
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 2..194
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 1..232 score: 43.477394
IPR030017	Scarecrow-like protein 18	PANTHER	PTHR31636:SF2	SCARECROW-LIKE PROTEIN 18	coord: 2..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G010540.1	CmoCh16G010540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010223	secondary shoot formation
cellular_component	GO:0005634	nucleus