CmoCh16G010030 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G010030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	nuclear transcription factor Y subunit B-9-like
Location	Cmo_Chr16: 6904163 .. 6904959 (+)
RNA-Seq Expression	CmoCh16G010030
Synteny	CmoCh16G010030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAAAAAGTAGTGTATTAATGAATTTTTTTAAAAGATTTATTTTTAATCACTATTTTAAATTTAATAAAATAAATTATTAATATTTATGTATTTATTTAAGGGCTTAATTTTTTGGTTTTTAAAATTTTAATTTTCGTCCTATTTTGGAAAAAGATAATTTTTAATTATATTTCTTTGTGACTGTTAAAAAGTTTAACCGTTTGGTTTTAGGGTTGAACCACCACCTCACAAACGGTGCAACCGCCACTGGCAACTCCCCTGCTACCTGCCACGTGCCGGTCACTGGTGCCAACAACGAGCAGAGCCAACAATGCATGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCCAAGATATCCGACGATGCCAAGGAGACCATCCAAGAATGTGTATCAGAGTACATCAGCTTCATCACTGGAGAAGCTAACGAGCGATGCCAACGGGAGCAGCGCAAGACAGTGACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTCGGCTTTGACGACTACATTGAGCCACTAACTATGTTCCTCAACCGATACCGTGAGTCGGAGAGTGATCGAGTTCGTACTGAGCCGATCTTGAGGCGCAATGTGGATTATGTGCCACAAGTGGGGATGATGCCACCGTACGGGCAAGCGTTTCCATTGGGGCACACCTCGACAGGGATGTTCGATGCAATGGGCGGATATTACGGTGGAGGTAGGAGTGGCGGGACGAGCTCTGGAAACGGTAATCAGCTTTGA

mRNA sequence

ATGGTAAAAAAATTTAACCGTTTGGTTTTAGGGTTGAACCACCACCTCACAAACGGTGCAACCGCCACTGGCAACTCCCCTGCTACCTGCCACGTGCCGGTCACTGGTGCCAACAACGAGCAGAGCCAACAATGCATGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCCAAGATATCCGACGATGCCAAGGAGACCATCCAAGAATGTGTATCAGAGTACATCAGCTTCATCACTGGAGAAGCTAACGAGCGATGCCAACGGGAGCAGCGCAAGACAGTGACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTCGGCTTTGACGACTACATTGAGCCACTAACTATGTTCCTCAACCGATACCGTGAGTCGGAGAGTGATCGAGTTCGTACTGAGCCGATCTTGAGGCGCAATGTGGATTATGTGCCACAAGTGGGGATGATGCCACCGTACGGGCAAGCGTTTCCATTGGGGCACACCTCGACAGGGATGTTCGATGCAATGGGCGGATATTACGGTGGAGGTAGGAGTGGCGGGACGAGCTCTGGAAACGGTAATCAGCTTTGA

Coding sequence (CDS)

ATGGTAAAAAAATTTAACCGTTTGGTTTTAGGGTTGAACCACCACCTCACAAACGGTGCAACCGCCACTGGCAACTCCCCTGCTACCTGCCACGTGCCGGTCACTGGTGCCAACAACGAGCAGAGCCAACAATGCATGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCCAAGATATCCGACGATGCCAAGGAGACCATCCAAGAATGTGTATCAGAGTACATCAGCTTCATCACTGGAGAAGCTAACGAGCGATGCCAACGGGAGCAGCGCAAGACAGTGACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTCGGCTTTGACGACTACATTGAGCCACTAACTATGTTCCTCAACCGATACCGTGAGTCGGAGAGTGATCGAGTTCGTACTGAGCCGATCTTGAGGCGCAATGTGGATTATGTGCCACAAGTGGGGATGATGCCACCGTACGGGCAAGCGTTTCCATTGGGGCACACCTCGACAGGGATGTTCGATGCAATGGGCGGATATTACGGTGGAGGTAGGAGTGGCGGGACGAGCTCTGGAAACGGTAATCAGCTTTGA

Protein sequence

MVKKFNRLVLGLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGGRSGGTSSGNGNQL

Homology

[Close]

BLAST of CmoCh16G010030 vs. ExPASy Swiss-Prot
Match: Q9SFD8 (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 2.6e-48
Identity = 118/206 (57.28%), Postives = 134/206 (65.05%), Query Frame = 0


Query: 10  LGLNHHLTNGATATGNSPATCHVPVTGA---NN----EQSQQCMVREQDQYMPIANVIRI 69
           L L+ H  N       +P T  V V GA   NN    +Q   C+ REQDQYMPIANVIRI
Sbjct: 19  LNLDQHSNN------PTPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRI 78

Query: 70  MRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGF 129
           MR+ LPSHAKISDDAKETIQECVSEYISF+TGEANERCQREQRKT+TAED+LWAM KLGF
Sbjct: 79  MRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGF 138

Query: 130 DDYIEPLTMFLNRYRESESDR---VRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGM 189
           D+Y++PLT+F+NRYRE E+DR   +R EP   R       +G   P     P G    GM
Sbjct: 139 DNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGM 198

Query: 190 FD---AMGG--YYGGGRSGGTSSGNG 201
            D    MGG  YY  G SG   S  G
Sbjct: 199 LDQSMVMGGGRYYQNGSSGQDESSVG 218

[Close]

BLAST of CmoCh16G010030 vs. ExPASy Swiss-Prot
Match: Q84W66 (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 185.7 bits (470), Expect = 5.4e-46
Identity = 87/106 (82.08%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 38  NNEQSQQCMVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEAN 97
           +N   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITGEAN
Sbjct: 47  SNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEAN 106

Query: 98  ERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDR 144
           ERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 107 ERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of CmoCh16G010030 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 63/99 (63.64%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 48  REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 107
           REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 108 VTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDRVRT 147
           +  +D+LWAM  LGF+DY+EPL ++L +YRE E ++  T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 118

[Close]

BLAST of CmoCh16G010030 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-33
Identity = 63/109 (57.80%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 35  TGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITG 94
           +G  +   +    REQD+++PIANV RIM+R LP++AKIS DAKET+QECVSE+ISFITG
Sbjct: 8   SGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITG 67

Query: 95  EANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDR 144
           EA+++CQRE+RKT+  +D+LWAM  LGF+DYI+PL ++L+++RE E ++
Sbjct: 68  EASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEK 116

[Close]

BLAST of CmoCh16G010030 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.9e-33
Identity = 77/154 (50.00%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 38  NNEQSQQCM-VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 97
           NN+  Q  +  REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISF+TGEA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 98  NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDRVRTEPILRRNVDY 157
           +++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL ++L R+RE E +R      L R    
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTG----LGR---- 134

Query: 158 VPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 191
            PQ G     G+   +G          GG+YGGG
Sbjct: 135 -PQTG-----GE---VGEHQRDAVGDGGGFYGGG 151

[Close]

BLAST of CmoCh16G010030 vs. ExPASy TrEMBL
Match: A0A6J1EWU1 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111438744 PE=3 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.4e-105
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 11  GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 70
           GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH
Sbjct: 36  GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 95

Query: 71  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 130
           AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT
Sbjct: 96  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 155

Query: 131 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 190
           MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG
Sbjct: 156 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 215

Query: 191 RSGGTSSGNGNQL 204
           RSGGTSSGNGNQL
Sbjct: 216 RSGGTSSGNGNQL 228

[Close]

BLAST of CmoCh16G010030 vs. ExPASy TrEMBL
Match: A0A6J1HKX5 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita maxima OX=3661 GN=LOC111465094 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 191/193 (98.96%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 11  GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 70
           GLNHHL++GATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH
Sbjct: 62  GLNHHLSSGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 121

Query: 71  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 130
           AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT
Sbjct: 122 AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 181

Query: 131 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 190
           MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG
Sbjct: 182 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 241

Query: 191 RSGGTSSGNGNQL 204
           RSGGTSSGNGNQL
Sbjct: 242 RSGGTSSGNGNQL 254

[Close]

BLAST of CmoCh16G010030 vs. ExPASy TrEMBL
Match: A0A5A7VC19 (Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00440 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.5e-87
Identity = 166/196 (84.69%), Postives = 175/196 (89.29%), Query Frame = 0


Query: 10  LGLNHHLTNGATATGNSPAT--CHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRIL 69
           L  NHHL+NG TATGNS AT    V  T  NNEQ+QQC+VREQDQYMPIANVIRIMRRIL
Sbjct: 15  LNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQYMPIANVIRIMRRIL 74

Query: 70  PSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIE 129
           PSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIE
Sbjct: 75  PSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIE 134

Query: 130 PLTMFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYY 189
           PLT+FLNRYRESESDR+RTEPILRRNVDY PQVGM+ PYGQAF +GH   GMFDAMGGYY
Sbjct: 135 PLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYY 194

Query: 190 GGGRSGGTSSGNGNQL 204
           GGG  GG S+GNG+QL
Sbjct: 195 GGGGGGGPSAGNGSQL 210

[Close]

BLAST of CmoCh16G010030 vs. ExPASy TrEMBL
Match: A0A5D3CPF3 (Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00390 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 165/193 (85.49%), Postives = 174/193 (90.16%), Query Frame = 0


Query: 13  NHHLTNGATATGNSPAT--CHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 72
           NHHL+NG TATGNS AT    V  T  NNEQ+QQC+VREQDQYMPIANVIRIMRRILPSH
Sbjct: 18  NHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQYMPIANVIRIMRRILPSH 77

Query: 73  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 132
           AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT
Sbjct: 78  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 137

Query: 133 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 192
           +FLNRYRESESDR+RTEPILRRNVDY PQVGM+ PYGQAF +GH   GMFDAMGGYYGGG
Sbjct: 138 VFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGG 197

Query: 193 RSGGTSSGNGNQL 204
             GG S+GNG+QL
Sbjct: 198 GGGGPSAGNGSQL 210

[Close]

BLAST of CmoCh16G010030 vs. ExPASy TrEMBL
Match: A0A1S3BKV5 (nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC103491142 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 165/193 (85.49%), Postives = 174/193 (90.16%), Query Frame = 0


Query: 13  NHHLTNGATATGNSPAT--CHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 72
           NHHL+NG TATGNS AT    V  T  NNEQ+QQC+VREQDQYMPIANVIRIMRRILPSH
Sbjct: 18  NHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQYMPIANVIRIMRRILPSH 77

Query: 73  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 132
           AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT
Sbjct: 78  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 137

Query: 133 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 192
           +FLNRYRESESDR+RTEPILRRNVDY PQVGM+ PYGQAF +GH   GMFDAMGGYYGGG
Sbjct: 138 VFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGG 197

Query: 193 RSGGTSSGNGNQL 204
             GG S+GNG+QL
Sbjct: 198 GGGGPSAGNGSQL 210

[Close]

BLAST of CmoCh16G010030 vs. NCBI nr
Match: KAG6577520.1 (Nuclear transcription factor Y subunit B-9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 392.1 bits (1006), Expect = 2.9e-105
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 11  GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 70
           GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH
Sbjct: 87  GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 146

Query: 71  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 130
           AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT
Sbjct: 147 AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 206

Query: 131 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 190
           MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG
Sbjct: 207 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 266

Query: 191 RSGGTSSGNGNQL 204
           RSGGTSSGNGNQL
Sbjct: 267 RSGGTSSGNGNQL 279

[Close]

BLAST of CmoCh16G010030 vs. NCBI nr
Match: XP_023553376.1 (nuclear transcription factor Y subunit B-9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.1 bits (1006), Expect = 2.9e-105
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 11  GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 70
           GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH
Sbjct: 87  GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 146

Query: 71  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 130
           AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT
Sbjct: 147 AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 206

Query: 131 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 190
           MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG
Sbjct: 207 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 266

Query: 191 RSGGTSSGNGNQL 204
           RSGGTSSGNGNQL
Sbjct: 267 RSGGTSSGNGNQL 279

[Close]

BLAST of CmoCh16G010030 vs. NCBI nr
Match: XP_022932374.1 (nuclear transcription factor Y subunit B-9-like [Cucurbita moschata])

HSP 1 Score: 392.1 bits (1006), Expect = 2.9e-105
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 11  GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 70
           GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH
Sbjct: 36  GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 95

Query: 71  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 130
           AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT
Sbjct: 96  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 155

Query: 131 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 190
           MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG
Sbjct: 156 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 215

Query: 191 RSGGTSSGNGNQL 204
           RSGGTSSGNGNQL
Sbjct: 216 RSGGTSSGNGNQL 228

[Close]

BLAST of CmoCh16G010030 vs. NCBI nr
Match: XP_022965151.1 (nuclear transcription factor Y subunit B-9-like [Cucurbita maxima])

HSP 1 Score: 388.7 bits (997), Expect = 3.2e-104
Identity = 191/193 (98.96%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 11  GLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 70
           GLNHHL++GATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH
Sbjct: 62  GLNHHLSSGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSH 121

Query: 71  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 130
           AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT
Sbjct: 122 AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 181

Query: 131 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 190
           MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG
Sbjct: 182 MFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 241

Query: 191 RSGGTSSGNGNQL 204
           RSGGTSSGNGNQL
Sbjct: 242 RSGGTSSGNGNQL 254

[Close]

BLAST of CmoCh16G010030 vs. NCBI nr
Match: XP_038905819.1 (nuclear transcription factor Y subunit B-9-like [Benincasa hispida])

HSP 1 Score: 340.9 bits (873), Expect = 7.6e-90
Identity = 169/192 (88.02%), Postives = 177/192 (92.19%), Query Frame = 0


Query: 13  NHHLTNGATATGNSPATCHVPV-TGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSHA 72
           NHHL+NG  ATGNSPAT  +PV T  NNEQ+QQCMVREQDQYMPIANVIRIMRRILPSHA
Sbjct: 47  NHHLSNGGAATGNSPATSPIPVATATNNEQNQQCMVREQDQYMPIANVIRIMRRILPSHA 106

Query: 73  KISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTM 132
           KISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT+
Sbjct: 107 KISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTV 166

Query: 133 FLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGGR 192
           FLNRYRESESDR+RTEPILRRNVDY PQVGMMPPYGQAF +GH   GMFDAMGGYY GG 
Sbjct: 167 FLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYNGGG 226

Query: 193 SGGTSSGNGNQL 204
           SGG S+GNG+QL
Sbjct: 227 SGGPSAGNGSQL 238

[Close]

BLAST of CmoCh16G010030 vs. TAIR 10
Match: AT1G21970.1 (Histone superfamily protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-49
Identity = 118/206 (57.28%), Postives = 134/206 (65.05%), Query Frame = 0


Query: 10  LGLNHHLTNGATATGNSPATCHVPVTGA---NN----EQSQQCMVREQDQYMPIANVIRI 69
           L L+ H  N       +P T  V V GA   NN    +Q   C+ REQDQYMPIANVIRI
Sbjct: 19  LNLDQHSNN------PTPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRI 78

Query: 70  MRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGF 129
           MR+ LPSHAKISDDAKETIQECVSEYISF+TGEANERCQREQRKT+TAED+LWAM KLGF
Sbjct: 79  MRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGF 138

Query: 130 DDYIEPLTMFLNRYRESESDR---VRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGM 189
           D+Y++PLT+F+NRYRE E+DR   +R EP   R       +G   P     P G    GM
Sbjct: 139 DNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGM 198

Query: 190 FD---AMGG--YYGGGRSGGTSSGNG 201
            D    MGG  YY  G SG   S  G
Sbjct: 199 LDQSMVMGGGRYYQNGSSGQDESSVG 218

[Close]

BLAST of CmoCh16G010030 vs. TAIR 10
Match: AT5G47670.1 (nuclear factor Y, subunit B6 )

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-47
Identity = 87/106 (82.08%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 38  NNEQSQQCMVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEAN 97
           +N   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITGEAN
Sbjct: 47  SNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEAN 106

Query: 98  ERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDR 144
           ERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 107 ERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of CmoCh16G010030 vs. TAIR 10
Match: AT5G47670.2 (nuclear factor Y, subunit B6 )

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-47
Identity = 87/106 (82.08%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 38  NNEQSQQCMVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEAN 97
           +N   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITGEAN
Sbjct: 18  SNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEAN 77

Query: 98  ERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDR 144
           ERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 78  ERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 123

[Close]

BLAST of CmoCh16G010030 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 144.8 bits (364), Expect = 7.5e-35
Identity = 63/99 (63.64%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 48  REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 107
           REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 108 VTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDRVRT 147
           +  +D+LWAM  LGF+DY+EPL ++L +YRE E ++  T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 118

[Close]

BLAST of CmoCh16G010030 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 141.7 bits (356), Expect = 6.3e-34
Identity = 77/154 (50.00%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 38  NNEQSQQCM-VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 97
           NN+  Q  +  REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISF+TGEA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 98  NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDRVRTEPILRRNVDY 157
           +++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL ++L R+RE E +R      L R    
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTG----LGR---- 134

Query: 158 VPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGG 191
            PQ G     G+   +G          GG+YGGG
Sbjct: 135 -PQTG-----GE---VGEHQRDAVGDGGGFYGGG 151

The following BLAST results are available for this feature:

BLAST of CmoCh16G010030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFD8	2.6e-48	57.28	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q84W66	5.4e-46	82.08	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O23310	1.1e-33	63.64	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q69J40	1.8e-33	57.80	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9FGJ3	8.9e-33	50.00	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of CmoCh16G010030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWU1	1.4e-105	100.00	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HKX5	1.5e-104	98.96	nuclear transcription factor Y subunit B-9-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7VC19	6.5e-87	84.69	Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3CPF3	1.1e-86	85.49	Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BKV5	1.1e-86	85.49	nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC1034911...	[more]

BLAST of CmoCh16G010030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577520.1	2.9e-105	100.00	Nuclear transcription factor Y subunit B-9, partial [Cucurbita argyrosperma subs...	[more]
XP_023553376.1	2.9e-105	100.00	nuclear transcription factor Y subunit B-9-like [Cucurbita pepo subsp. pepo]	[more]
XP_022932374.1	2.9e-105	100.00	nuclear transcription factor Y subunit B-9-like [Cucurbita moschata]	[more]
XP_022965151.1	3.2e-104	98.96	nuclear transcription factor Y subunit B-9-like [Cucurbita maxima]	[more]
XP_038905819.1	7.6e-90	88.02	nuclear transcription factor Y subunit B-9-like [Benincasa hispida]	[more]

BLAST of CmoCh16G010030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21970.1	1.8e-49	57.28	Histone superfamily protein	[more]
AT5G47670.1	3.8e-47	82.08	nuclear factor Y, subunit B6	[more]
AT5G47670.2	3.8e-47	82.08	nuclear factor Y, subunit B6	[more]
AT4G14540.1	7.5e-35	63.64	nuclear factor Y, subunit B3	[more]
AT5G47640.1	6.3e-34	50.00	nuclear factor Y, subunit B2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 119..137 score: 31.1 coord: 81..99 score: 43.9 coord: 100..118 score: 32.06
None	No IPR available	PANTHER	PTHR11064:SF115	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9	coord: 34..171
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 40..154 e-value: 9.8E-41 score: 140.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 50..143
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 54..117 e-value: 2.2E-25 score: 88.7
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 34..171
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 84..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G010030.1	CmoCh16G010030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding