CmoCh16G009710 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G009710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	exopolygalacturonase-like
Location	Cmo_Chr16: 6591810 .. 6592349 (+)
RNA-Seq Expression	CmoCh16G009710
Synteny	CmoCh16G009710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTTTAACATCCCAAGTGGCAGTATGTTTTGAATGCAGCCAAGTTCTTCCATTCGAAGGCGTAATGCTACAAGACATTAACCTCTCCTTCAAAGGTGACGGCGAACCAACTTCCATTTGTCACAATGTGAAGGGCTCTGCTTTTGGCAAACAAATTCCTTCCTCTTGCCTTTAATTACTTTGTGTTTGTTTTTTTTTCCTTCCTTATAAGAGTGGCTGGTCGAGGAAGGATTAGATATACATCCATCCCATCAATCTTTCTTCTATTATCCTATGGATTAAGCATTTGATTATGTTAGTTCTTGTTATTTTGATAACCATGCAAAATTTATAAACACAGCTCGATTCAATAGATTATCACTTTTCAGTTTATACTTTTTCTCTCTACTCTTATTCTAATACACAACGCTTCCAAATGAATTGGCTTATTGGAAAAGAGTGGATAAGGTTTTTGTTGCGGGTTGCTTTCACGCTTGGATTGCATCGTTGGGTTCAAACACAACAAGCCCCCCCATCGTGCATGATTGTGGGTTGA

mRNA sequence

ATGGAGAGTTTAACATCCCAAGTGGCAGTATGTTTTGAATGCAGCCAAGTTCTTCCATTCGAAGGCGTAATGCTACAAGACATTAACCTCTCCTTCAAAGGTGACGGCGAACCAACTTCCATTTGTCACAATCTCGATTCAATAGATTATCACTTTTCAGTTTATACTTTTTCTCTCTACTCTTATTCTAATACACAACGCTTCCAAATGAATTGGCTTATTGGAAAAGAGTGGATAAGGTTTTTGTTGCGGGTTGCTTTCACGCTTGGATTGCATCGTTGGGTTCAAACACAACAAGCCCCCCCATCGTGCATGATTGTGGGTTGA

Coding sequence (CDS)

ATGGAGAGTTTAACATCCCAAGTGGCAGTATGTTTTGAATGCAGCCAAGTTCTTCCATTCGAAGGCGTAATGCTACAAGACATTAACCTCTCCTTCAAAGGTGACGGCGAACCAACTTCCATTTGTCACAATCTCGATTCAATAGATTATCACTTTTCAGTTTATACTTTTTCTCTCTACTCTTATTCTAATACACAACGCTTCCAAATGAATTGGCTTATTGGAAAAGAGTGGATAAGGTTTTTGTTGCGGGTTGCTTTCACGCTTGGATTGCATCGTTGGGTTCAAACACAACAAGCCCCCCCATCGTGCATGATTGTGGGTTGA

Protein sequence

MESLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNLDSIDYHFSVYTFSLYSYSNTQRFQMNWLIGKEWIRFLLRVAFTLGLHRWVQTQQAPPSCMIVG

Homology

[Close]

BLAST of CmoCh16G009710 vs. ExPASy TrEMBL
Match: A0A6J1F153 (exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111438612 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 3   SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL 46
           S TSQVAV FECSQV   E ++LQDINLS+KGDG+PTSICHN+
Sbjct: 326 SSTSQVAVSFECSQVCSCESIVLQDINLSYKGDGQPTSICHNV 368

[Close]

BLAST of CmoCh16G009710 vs. ExPASy TrEMBL
Match: A0A6J1L832 (exopolygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111500170 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.1e-08
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 6   SQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL 46
           +Q AV FECSQV P EG++LQDINLSF G G+PTSICHN+
Sbjct: 352 TQAAVNFECSQVFPCEGIVLQDINLSFNGGGQPTSICHNV 391

[Close]

BLAST of CmoCh16G009710 vs. ExPASy TrEMBL
Match: A0A5D3BB58 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001870 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-07
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 3   SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL 46
           S  +QVAV FECSQVLP +G++LQDINL+F G G+ TSICHN+
Sbjct: 295 SSNTQVAVDFECSQVLPCQGIVLQDINLTFNGGGQSTSICHNV 337

[Close]

BLAST of CmoCh16G009710 vs. ExPASy TrEMBL
Match: A0A0A0L660 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063620 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-06
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 3   SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL 46
           S  + VAV FECSQVLP +G++LQDINL+F G G+ TSICHN+
Sbjct: 190 SSNTPVAVDFECSQVLPCQGIVLQDINLTFNGGGKTTSICHNV 232

[Close]

BLAST of CmoCh16G009710 vs. ExPASy TrEMBL
Match: A0A0A0L7H9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063610 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 3   SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL 46
           S  +QVAV FECS+V+P +G++LQDINL F G G  TS CHN+
Sbjct: 304 SSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNV 346

[Close]

BLAST of CmoCh16G009710 vs. NCBI nr
Match: KAG6577493.1 (Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 3   SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL 46
           S TSQVAV FECSQVLP +G++LQDINLS KGDGEPTSIC N+
Sbjct: 161 SSTSQVAVNFECSQVLPCQGIVLQDINLSLKGDGEPTSICDNV 203

[Close]

BLAST of CmoCh16G009710 vs. NCBI nr
Match: KAG6577490.1 (Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-09
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 3   SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL 46
           S TSQVAV FECSQV   E ++LQDINLS+KGDG+PTSICHN+
Sbjct: 154 SSTSQVAVSFECSQVCSCESIVLQDINLSYKGDGQPTSICHNV 196

[Close]

BLAST of CmoCh16G009710 vs. NCBI nr
Match: XP_022932248.1 (exopolygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-09
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 3   SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL 46
           S TSQVAV FECSQV   E ++LQDINLS+KGDG+PTSICHN+
Sbjct: 326 SSTSQVAVSFECSQVCSCESIVLQDINLSYKGDGQPTSICHNV 368

[Close]

BLAST of CmoCh16G009710 vs. NCBI nr
Match: KAG6577492.1 (Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-08
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 3   SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL 46
           S TSQ AV FECSQV   E ++LQDINLS+KGDGEPTSICHN+
Sbjct: 157 SSTSQAAVSFECSQVCSCESIVLQDINLSYKGDGEPTSICHNV 199

[Close]

BLAST of CmoCh16G009710 vs. NCBI nr
Match: XP_023552935.1 (exopolygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-08
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 3   SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL 46
           S TSQ AV FECSQV   E ++LQDINLS+KGDGEPTSICHN+
Sbjct: 388 SSTSQAAVSFECSQVCSCESIVLQDINLSYKGDGEPTSICHNV 430

The following BLAST results are available for this feature:

BLAST of CmoCh16G009710 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G009710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F153	3.8e-09	74.42	exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111438612 PE=3 SV=...	[more]
A0A6J1L832	7.1e-08	72.50	exopolygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111500170 PE=3 SV=1	[more]
A0A5D3BB58	1.6e-07	67.44	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0L660	1.0e-06	65.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063620 PE=3 SV=1	[more]
A0A0A0L7H9	1.5e-05	60.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063610 PE=3 SV=1	[more]

BLAST of CmoCh16G009710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577493.1	2.1e-09	79.07	Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6577490.1	7.8e-09	74.42	Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022932248.1	7.8e-09	74.42	exopolygalacturonase-like [Cucurbita moschata]	[more]
KAG6577492.1	1.0e-08	74.42	Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023552935.1	1.0e-08	74.42	exopolygalacturonase-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh16G009710 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 6..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G009710.1	CmoCh16G009710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity