CmoCh16G009620 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G009620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	serine/arginine-rich splicing factor RS40-like isoform X1
Location	Cmo_Chr16: 6368749 .. 6380545 (+)
RNA-Seq Expression	CmoCh16G009620
Synteny	CmoCh16G009620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAAAAAAAAAAAAAAAAAAAACCCTATAAGCACCTCGAGGGCTACGCACTTCTTCCTCTCTATCGCAAATCCCTTCCCTGTTCGACACCGGCTACTACGGCGGCGATTGTGACGGCAGCGGTGACGCAGCTCCTCAGGGGGCACGACCAGGCGACGGCGAAACCCGGCTCAGATCTGCAGAAGTACATATCTCCGGCGTTTGATCACCCAAGCAACGACCTATCCCGACGACATTCGGATCTGCAACGATCCAGCCCTCGGGTATTTGGATCTGCTACAGATACACCTTGACAACCCGATCTGCGGCGGACGGCGACGACCATAACTTACGGTAACTGATTCTGTGCGTTAGTTTCCCTTCAGTTACGATTCAGCAAGATTCAAGTCGGCAGCGACGTTTTCGGGAACTTGAACCATTTGGATTTGTAGCGCATTAAGGACCTTAGTAAGTGGTTCTCATTTTCGAATTATTTGCTTGAATCTCTTGGACTTTTTTGCATTCTTTTAGGCTCCGTATCTATGTCAAATTGTGATGTGAATTGTGTGCTTGGATATGTGTGGGAAAGTACACATTGGTTGATGTGAATTGTGTGCTTGAATATGTGTGGGAAAGTACACATTGGTTAACCGACACAGAATGATTCCCCACCTAGATCTAACCATTTCAACTGAATTAGCCGTAATCGTAGTATGTAAGTCAGGATGGGAGAATGAAGTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAATGCTAGAAGGAAGGTCCAACTAAGATGAAGAGGAAGGAGGAAATGAACATTGGAGATGGAATAGATGTGCTCCTTTGAACGGCAAGTGCTGTGAAAGTTAAAAAAAAAACCAGAATGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGAATATGTGTGGGAAAGTACACATTGGTTAACCGACACAGAATGATTCCCCACCTAGATCTAACCATTTCAACTGAATTAGCCGTAATCGTAGTATGTAAGTCAGGATGGGAGAATGAAGTAGATGAAATGCTAGAAGGAAGGTCCAACTAAGATGAAGAGGAAGGAGGAAATGAACATTGGAGATGGAATAGATGTGCTCCTTTGAACGGCAAGTGCTGTGAAAGTTAAAAAAAAAACCAGAATGAGAGTCAAGGTTGATTGAGGTTGCAACGAGATTGATAAATTTGAAAACCCTTAGAAGCTTACCATGTTTGCAGATTGATGCCCCCTCAACATTAGAGAAGAGGAACAAGCGGGATAGAGAGGTGTGTTGTGGAGCTGACTTGCCATATCTAACACCTCTACGGGTTGATCGGGAATGACCAGGCTACATACCCCTAGAAGATAAGAGCCCCTTAAACTTAAAGCACTCTGCACATGTCTGCTCGCAGTTCTAGGCTCACCATCCTCATGATGAAAAAGACCTTCATACAACATCCCCACCCCCCCCACCCACACACACACACACCCCACAAGAAACACTAATCGTGTCCTTGGTTCAAAGAACCGAGGGGCTAAGGCCATCTATCTGCCCGTGGCTCCAGCCCCTGCAGGAGAAATCTCCTTCGACGGCAGAGTCAAATTTATCCATGGATTGTTATCTTTATTACTGTTGGTTATGCTAACGTCAACTCGTATATTCTTCTGCTAGCTGTTAGGTGGTTAATAGTTGGAATTATGGACTTCCAATGGATGATTATGGTCAGGCATTTACAAAAATGATTCCTCTGTAATGATGGTCAATGAGATAGCTCAGTTTGTCTATCTAATGGTTCAACTATTTTGCAATATTCCATTGCACCTTGTGTTTTGCGCTAGGCTTCAGAAAGCATTTATAGCACAAAAAGTTGTGGCTATAAGTGGCTAGAACTTGGAACTTAGGACCTACAGGTTGGATATTGCTGGTCAAACTTAAAAAGCTTTTTGTATGAACCAAAAGTTCATTTAAAGTATATATTTTTTTGTTTAGGAAAAACAATTTGACACGGACTTGCTAACTGATTTTCAGATTAAGTGCATAGTTGTCGTGGATTCTTAAATATGTTCTTCACTTTTATGATTAGTGTCAAATAGCTTTCTTGTTGATGTCTCATTTGTATGTTTTTAAATGCTATAGAAACAAAATTTTTAATTTTATATTATGAAAGTAACAATATTGTATTTATATAAATATAAAGGTAATGATATGTTTAAAAATACAAAAGTTGAACATACTTATTTGCAAAAGGTAACTGCATGGTTGTTATGGATTTATTTTATATGTTCTTCACTCAGGGTTATTTTCAAATAGTTGTCTTGTTAATGTTTGGTACTTCTTTCTAGTTGTCATTTTATGTCTCTTCCTCCTGGGGTGGTTGTATCCTTGAACTTATTCTTTCTTTCCATATATAAATGAAAAGCTTGTTTCTTGTTAAAATAAAAGGTGTCTGGTTGATGTGGTGAAATTAGTTTCACGAACTCTGATGTTGTATTTCAATGTTCTTTTTTTCTTTTTTTCTTTTTTCTAATCATGAATAAAAGAGATATATTAAATGTTCTATTGTGTTTTTAACCTTTTTTCAGGAAGTATGAAGCCAATCTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATCTGGAAAGACTTTTTAGTCGATATGGGAAAGTTGATAGAGTAGATATGAAATCTGGTGAGCTTCTAGCCATAGAAAATCTGTTTGTGTTTTAATTCCTTTTTTATTAAATAAACTTATAAGGTGTATTCTAGTTACACAAAAGAGCGCGGTTGTGTTTTGTTCCTGAATTTCTTTTAAAGTAGCATATAATTTGTGTCATGTCGATACGTACCAATTGCAGAAAAGATAAAAGTATCATGTCGATACAAGCCACTTGCAATTTGCAAAGTTGCTGATATCTTTAATAGATGCAAATTACTGATCTGAAAATGTTACTCTCTATCCACCAAGAAAGTGTTGGATTCAATGTCGGCAAGGCAATTCAGCTGATGGAATTTCCTCCAAAGTAGTAGTTGTTCTCATTGCATTTGGTGCCTTGCAATACGAATGGGCATCATCCAGCGTATGGAAATCAGAGAAGGCAACATTTGATAAGTTTTTGGTGGAGGATTCTAAAAAAATTTGAGAAAAGAAGAGCGTGTATTTTAAATCCTAAAACTCCTTGGCCAGAATTTTTTTGGTGCAGGATTTTCTTCGCATATTCATAATCTTCTTGGATAAGGATGGCTCTTCACAATTGAGTTTTCCGCCTGTGACACCGCTTCCTCTTCTTGTTTCCAAGAAGATTCATTCCGATCCTCATTGGCACTGCCATCTTACATTTTCCTCAGACACTTTGCTTTCCATTCCTCATGACTTTTGCCTGCCTACAATTTCATACATTGTTTCAAGCTTGAAACATTGTCAACCTTAGCTGAGGCTGCAGAATAATGGAGAAGGCACTTTCTATTTGTAGACCTACCATGAGACATCCTGTTTTGGATTATTGCTCCTTGACACCACTTAATTCACAACACAAGGTCTGTTGCTAAATTCACTGTTAACTTAGTTTATAGATTTCACGGTGGTTGCAAATATTTCTTTCGTATGGTAAGAATTTTTTGTGGTTTGTTGAATGTTTGTTATAGAATAATTATGTTGCATTTAGAGGAATTCTTTGGAGGGAAAATTTTCATCTTTTATCATTGTTGGTGTCTCATCTCCAAGTCGTTATTCAGTTTTAGTTGTTTTATTGGTTTTCAGGTTTTGCTTTTATCTACATGGAGGATGAGAGAGAGGCTGAGGACGCTATCCGTGCACTTGATCGGAGAGAATTTGGCCGAAAGGGTCGCAGACTACGTGTTGAGTGGACCAAAGTAATATAAAATGATATGGCAGAACTTCCAACTAACTCTTTTCTTTCCATCCCTTTGTGAAACTTTTATTTGATTTTATTTACTATATCTTCAACTGTATTTTGATCGATCATTCTTTTGCTCTGTAGCAAGAGCGTGGCATTAGAAGACCAGGTGGTGGCAGAGGTGGAGGAGATTCAAGGAGATCCTCTACTAATACAAAACCTTCCAAGACTTTATTTGTTATTAACTTTGACCCATATCATACTAGGACAAGGGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAATGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAGGAGGATGCCACTAGAGCATTGGAGATTACAAACATGAGGTTAGTTTTTTTAGTTACATTGATATTTTCACTTGTTATAGGCAGGTGTGTACACGTTAAGTTATTGGTATGCCTTTTAATTATCATTACTGTGTACAGCAAATTGATGGATCGAGTAATTTCAGTGGAATATGCTGTTCGAGATGACGATGAGAAAAGAAATGGGTATAGTCCAGATAGGACTCGTGATAGGTCTCCCGATAGAAAACGACGATCCCCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTATGGCAATGGTGTTAGCCGCAGTCCATATAGGAAAGTCAGGGCTAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTACCAGAGAGTGAGGGAGAGGGGTTCTCCTGAATATGGTCGAGGTCGTAGTCCCAATCAGAGTCCTTATAGGAGAGAGAGAGAGCGAGAGAGATCAAGTGACCATGCCAGGGCCCCTAGCCATAGTCCTTATAGGAGAGAGCGAGAGCGAGAGAGATCAAGTGACCATGCTAGGGCCCCTAGCCATAGTCCTCCTCCTCCCCATCAGAGGGAAAGACCAAATGGTGACCGAGCCCACAGCGGAATTCACAGTCCTTACGGGAGAGAGAGGGGCAGTCCTACTGATGAACGTCGCACTAGCTATAGTCCTCGTGATAGAGAGAGGTCAAACCCGGACAATGGTCATGATCAGCGGCCAAATACAATAGCCGAACCAGGGGATAGCCCGAGTTATGGTGGGACTCAGAGCCCGAAGCATCGGGGCTATAAGAGGTTTGTACCTCGAGTTCGTTTAATTATTTTATTTGAAATTGTTATTTGAATTTTTCATCTAATCCCTGCATTCATGTGTGATGGTTTTGCAGCCGTTCACCTCAAGCAGAGGAATGAAGTTATAGATCTGGATCTGGTTGGTTTAGAAGAGTACGTTTTTAGTTGTATAATGGTTTTAACATTTTTAGTGTAAGGGTTTGCTTTGCCGATTTCTATACATTTATGCTTCAGTTTGTAGCGATGGTGGTATGGATGGATGATATATATGCTGTTTGTTGCCAGATTTGAGTTAACACACAAGTTTGCTCTATTTGGGTTTGCTCTATTTGGGTTTGCTGTCTAAAAAAAATGTTCCAATAGACTTATGGTTAGTATAGATAATTAAATTTATATATGCTTCATAAATGGTCCAAACAATTTGATCTCCAAAAAAACCGAACACATATAACTTCCATACCAAATCAAATAAAATCGAACCCAACAAACAAATTATTATCAATAGCAAATCAAATTAAAACGAAACTAAAGAGAAAAAAAGAAGCCAATTTTGATACCCATTTCGAACCAACCTCTTCCAATATGTATATATATACACACATATAAAATAAATAAATAAAATAAAAAAGGATCTCGAACTATTGAAAATCAAAAATTGGATTAGGAATCTTTTGAACTCACGAAAACTTTTGATACATTTTTCACTTGGATTCATTTAGTTCTTCTCTCAATATGGGAGAATATACCGACATGAGAATGTGAGAGATGCAGTAAACACTTTGGTTATAGTGTTTAGCTATCATCCATGTATGTAGGAAAATTTCTTGTCTCAGAACTACATAAATATGTGTCTTTTTGTTTAGTGTGAGTGCGGTCGATCTTACCTCTGCTTTCGCAACAACAATTGGTGTCATATCATTTTGGTTGTAACATTTGAGTATTGTGGAAGAGTTAACCTCATCGACCATAAGACATGTTCACACTCACCAATTATTTTAACTTTGTAGGACTAAACCATGATCTAACTTTGTAGGATGTTATTGAAGCCCAAACATGTGTTTAGTTGATGATGCACTACAACAAATACTAGAATCATGAATAGAACTAAGTAAGCTTGAATAATATGTCGTGATCCCTACATTGAACGTATTCAGTACAACATATGGAACTAAACTAAATATTACAATAAATTAGTTTTGTGCTCGTGTATCTCTCGGTATAAACACTTTATTAGACTATTAAAATTTAAAATTTTAGAAATTATATTATATTTTCAATGTCAAATATTTTAAAATTTATTAGAGTATTTTACCTTTTTTAATATTATATTTAGAGGTTGATTTTAAAAATAGAATAAAATAATTTTTATTTTTGAAATTAGTTTTGTATTTTCTTTTACTGAAAAAGGGAGAAAATAAAAAAAATTTATTTCTGTATTTGAAATTATTCCAGATTGCCCGTAAATGAAAATTAGGGTTAAAAAAAGAAAACCCTAAAAAGCTCCCATTTTTTCCACAGCCGCAGTCCTCCCGAGGTACCCTCCCACTCCTAGCCTTTCCGCCCAATCCACACTGCGTCAATCGACCTCCGGCGGCAAGCATACCATCTACGGCGGCCTGTAACTCTTCACTTCCGAAAAAGAATCTCGGCTGAGACTCGTCGGTTTGTTTGGGAGCGGTATGTGCATGGTTGTTGTGGATCTTTCATTATGTTATTTACTCTTTAAGATTAGTTTCAAATAATTTTCTTGTTGATGGACCTGTTTGTTTTTGTTGTTGTCTTCATATTGTGAGAGTGATGTGTTAAATGTTGTATTTTTCTTCTCCGGTATCTTTTACAGGTAGTATGAAGCCGATTTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATTTGGAAAGACTGTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTGGTGAGCTTCTATCCATAGCATGTTTTTCTGTTGTGTGTGTTTGAATTCCCTTTTTTTAACAAGAAATTTACCAGACATATATCAGAAACACAAAAGAGGACGTTTGTGTTATGATTCCTGTATTAATTTTAAAGTTGCGTTAAATTTGTATCATGTCGATACGAGGCACTTGCAAATTCTGAATCTATGCAATATACTGAACTATCGAAGTTACTTACTACCCGCTAAGAAAGTGTGGATACAACGTCCGCAAGGCAATTCAACCGTTGGAAATTCCCCCAAAGTTTGAGGTCGTCGTTCTCATTGCATTTGGTGCGTTGCGGTACGAATCGGCATCATCCAGCATATGGAAACCGGAGAAGGCGACTTTTGTTGGGTTTTTGGTTGGGGGTTTTTAAAAACATATTTGAGAAAAGAAGAGTGTATGTTTTAAATCCTAAACCGCCTTGGCCAGAATTTTCTTTGGTGCAGGATTTTCTTCGCATATTCATAATTCTCTTGGTTAATGATGGCTCTTCAGAATTGAGTTTTCCGTCTGTGACAAGCTTCCTCTTCTTGTTTCCACGATGATTCATACCGATTCTCAATGGCACTACTACTATCTTACATTTTCCTCCGACACTTTGCTTTCCAGTTTCCATTCCTCATGACTTTTGCATGCCTACAATTCATACATTGTTTCAAGGTTGAAACATTGTCAACCTCAGCTGAGCCTGCAGAATAATGGAGAAGGCACTTTCTATTTGTAGACCTACCATGAGACATCCTGTTTTGGATTATTGCTCCTTGACATCACTTAGTTCATACACAAGGTCTGTTGCTAAATTCACTGGTAACTTAGTTTATAGATTTCACGAAGGTTGTGAATATTTCTTTCTTGTGGTAAGAAATTTTTGTGGTTTATTGTGTTCTTCAATAGGGAGAAAATTGACATTGGATTTTGAGGAATTCGTTGGTGGAAAAATTATTTGGTGTCACACAGATGCCATAATTAGTTTTTTTCTGTTTGATTGGTTTACAGGCTTTGCTTTCATCTACATGGAGGATGAGAGAGATGCTGAGGATGCTATCCGTGCACTTGATCGGAGAGAATTTGGTCGAAAGGGCCGCAGACTACGTGTTGAGTGGACGAAAGTAATGTTCATTGATATGGCACAACTTGGAATGGACTCTTTCCTGTCCATCCCTTTGTGGAACATTATTTACTGTATCTTCAAATTGTATTTCGGTCAATCATTCGTTTGCTTTGCAGCAAGAACGTGGGGTTAGAAGACCTGGTGGAGGAGGTGGTGGAGGTGGAGGAGGTTCGAGGAGATCCTCTACGAATACAAGACCTTCAAAGACTTTATTTGTTATCAACTTTGACCCGTATCATACTAGGACAAGAGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAGTGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAAGAGGATGCCACTAGAGCATTGGAGCTTACAAACATGAGGTGAGTTTTCTATCATTGAATTGTATACGCATTTTATTTGAGTAGTAAGGTCATTATATTGAAGGTATGAGTTGATCCCGGTTTGCCCTCGTCTCTCTGAGACAATCTGATGGAAAATTACATTGCTATTTGCACTCGTTAGATGCCTTTTATATACATGTTAAGTTATTGGTATGCCTTTTAATTGTTATTACTTTGTACAGCAAATTGATGGATCGAGTGATTTCAGTGGAATACGCTGTTCGAGATGACGATGAGAAGAGAAATGGATTTAGTCCTGATAGGAATCGTGATAGGTCTCCCGATAGAAAACGACGATCTCCAAGTCCGTATAGAAGAGAGCGAGGAAGTCCTGATTATGGCAATGGTATTACCCGTAGTCCATATAGGAGACAAAGGGCTAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTATCAGAGGGAGAGAGAGAGGGAGAGGGGTTCTCCTGATTATGGTCGTGGTCGTAGTCCGAATCAGAGTCCTTATAGGCGAGAGAGGGAGAGATCAAGTGACCATGGTCGTGGTCGTAGTCCTAATCAGAGTCCTTATAGGAGAGAGAGGGAGAGATCAAGCGACCATGGTCGTGGTCGTAGTCCTAATCAGAGTCCTTATAGGAGGAGAGAGAGGGAGAGATCAAGCGACCATGGTCGTGGTCGTAGTCCTAATCAGAGTCCTTATAGGAGAGAGAGGGAGAGATCAAGCGACCATGCTAGGGCCCCTAGCCATAGCCCTCCCCATCAGAGGGAAAGACCAAATGATGACCGAGTCCGCGACCGAAGCCGCAGTCCTTACGGGAGAGAAAGGGGGAGTCCTACTACCGATGGACGTGGCACTAGCCATAGTCCTCGCGATAGAGAGAGGTCAAACCCAGACAATGGTCACGATCAGCGGCTGAATACAGCCGAACCCGAACCCGAACCCGAACCCGGGGATAGCCCCAGTTATGGTGGGACGACTCAGAGCCCAAAGCACCGTGGATATAGCAGGTTTGTACTTGGAGTTTGTTTTATTATGATTACTATTATTGTTCTCGATTCTTTTTCAAAACTTTCATCTTATGCCTGCGTTCGTGTTTGACCCGGTGTCGCAGCCGTTCACCACAAGCAGAGGAATGATGACGATGATGATGATGATGTAGTAGAAAGTGATGGTATGTGGATCTCAATCTGCTGCTTCAGGGTATGTTTGGTTGTGTGTAATCAGTATGAGTAGCAAACATGTATTCAAACGATACTCTGCTTTGTGATTTTCAATTACATTTGTGGCGCTTTAAGTTACAGTGATTATTCTATGCTTGCAATCAAAATGAACAGAACCACCCTGATCCATATTTGGTTGTCCCAAGTGAATCAACTTGTATTTTTGGGGTATGAATAGGTTGAGCTTGGTTTAGCTGTTGATATTGGCAATGAACCACCCTGCCTTGGATTGTGCCATGAAAATGATAATTTTGTCGGTTGTTTCATAAGATATGTATCCATTCATTTCCTTCAAAAAGATCCTCGACCAAATTTAATTTAATGACAAACTTTTCATATGCTTCAATTTTATATATATATTTTGTAACTACCATTTTTTTTCTTTTATCTATTATTTTTATGACATGAGAGGAAGACTGACAAATTCTAGTATGTTATATTTTGCAATAACTTTGAAAAAATTGACAAAAAAAAAAAAAAAACATAGTTTTATCTCTTGAGTCGTCCAAATAACTTAGACCAAATGCTTTGATACTAATTTTAAGTGGTTCCAACAAAGAGCTTATTTAGAAAAAAGATTGAATTTTGAATCTAAAATGATAATTTTTAGATCCCAAGAAATGCAACTTGGATATTTTCAATCACAAATTTTCAATGAGACTTTTCGTGTCATCTTCTCTCATGTGAAATTTTTTGAGGGCTTAATTCTCTTGCTATTGTTGATCATTTTAGGTGATTCTTATTTTCAAATCGTTATAATGCAATCTACAACTTGTACAAAGGACTTCAGAAACGAATCAGATGAAAACACTCTTGATTAACCAAAGACACCGAAAGACGAGCACGTGAAAGTAGTGTAAGAAAAGGGAGCTTATTTGAGTCACCTTATATATGAACAACATTCCTTTCTCAAAACCAACTTTTTTGCTATCTACAATGCAAAAAACCTGTTCATCAAAATCTTTCTTCTTTTCTTTTTATTCTTTCTTCACACCCTTGCCTCTTTCTTAGAAGCTTGTGTTCTAAATTCGCCTTTTTATTTTCGTGTCCATGTATATTCTTATCGTCATACTCCAACGACTCTTCCGTCACATGAGATCCCTTTCGTTCTCAATCACGGAGGACACCGTGGTATCAGAGCCAGTATCGTCTAAATTTAAGTTCAGAACTTCGCCACAGAGAGAGGAGCTCTCGTCCTCGCCGTTTATCGATGAGGTGGTCGACATATCCGTAATGGTACTCGCTGTGGCAGGAGAAGGAGAGATATCTATTTCTTCAACAGGCTGTTGAAGGCTCCAGTACATAATGCTGGCTGTTAATGTGAGGATCATTTTTGGATTCACCTGCCATAATATTAACACAAATATATCCACAATTCTAAGAGAGGCTGGCAGATCAGCTCATCAAACAAACAAAATAACCAAATCTGATGCGAAACCATACGAAAAACGATCTTTTTCTTACTACTTGCATGGTTTCAAATGTCGGTAACTGTGCTACGGTATTACTATAACAGCTTAAGCTCACCGCTAGCAGATATTGTCCTTTCTGAGCTTCCACTCAAGGTTTTAAAGCTCCTCAAAGAGGACAATATCGGCTAACGGTGAGCTTGAACGGTTACAATTACGAGAGAAATAAACCATACCCCATCAAAGTTTTGATCTTACCTCTATTATGTCCTCAGGTAACAAGAATATCGAACAACCCAGCTTTCGTGCAACACTGATAATGTAG

mRNA sequence

GATAAAAAAAAAAAAAAAAAAAACCCTATAAGCACCTCGAGGGCTACGCACTTCTTCCTCTCTATCGCAAATCCCTTCCCTGTTCGACACCGGCTACTACGGCGGCGATTGTGACGGCAGCGGTGACGCAGCTCCTCAGGGGGCACGACCAGGCGACGGCGAAACCCGGCTCAGATCTGCAGAAGTACATATCTCCGGCGTTTGATCACCCAAGCAACGACCTATCCCGACGACATTCGGATCTGCAACGATCCAGCCCTCGGGTATTTGGATCTGCTACAGATACACCTTGACAACCCGATCTGCGGCGGACGGCGACGACCATAACTTACGGTAACTGATTCTGTGCGTTAGTTTCCCTTCAGTTACGATTCAGCAAGATTCAAGTCGGCAGCGACGTTTTCGGGAACTTGAACCATTTGGATTTGTAGCGCATTAAGGACCTTAGAAGTATGAAGCCAATCTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATCTGGAAAGACTTTTTAGTCGATATGGGAAAGTTGATAGAGTAGATATGAAATCTGGTTTTGCTTTTATCTACATGGAGGATGAGAGAGAGGCTGAGGACGCTATCCGTGCACTTGATCGGAGAGAATTTGGCCGAAAGGGTCGCAGACTACGTGTTGAGTGGACCAAACAAGAGCGTGGCATTAGAAGACCAGGTGGTGGCAGAGGTGGAGGAGATTCAAGGAGATCCTCTACTAATACAAAACCTTCCAAGACTTTATTTGTTATTAACTTTGACCCATATCATACTAGGACAAGGGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAATGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAGGAGGATGCCACTAGAGCATTGGAGATTACAAACATGAGGTTAGTTTTTTTAGTTACATTGATATTTTCACTTGTTATAGGCAGGTGTGTACACGTTAAGTTATTGGTATGCCTTTTAATTATCATTACTGTGTACAGCAAATTGATGGATCGAGTAATTTCAGTGGAATATGCTGTTCGAGATGACGATGAGAAAAGAAATGGGTATAGTCCAGATAGGACTCGTGATAGGTCTCCCGATAGAAAACGACGATCCCCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTATGGCAATGGTGTTAGCCGCAGTCCATATAGGAAAGTCAGGGCTAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTACCAGAGAGTGAGGGAGAGGGGTTCTCCTGAATATGGTCGAGGTCGTAGTCCCAATCAGAGTCCTTATAGGAGAGAGAGAGAGCGAGAGAGATCAAGTGACCATGCCAGGGCCCCTAGCCATAGTCCTTATAGGAGAGAGCGAGAGCGAGAGAGATCAAGTGACCATGCTAGGGCCCCTAGCCATAGTCCTCCTCCTCCCCATCAGAGGGAAAGACCAAATGGTGACCGAGCCCACAGCGGAATTCACAGTCCTTACGGGAGAGAGAGGGGCAGTCCTACTGATGAACGTCGCACTAGCTATAGTCCTCGTGATAGAGAGAGGTCAAACCCGGACAATGGTCATGATCAGCGGCCAAATACAATAGCCGAACCAGGGGATAGCCCGAGTTATGGTGGGACTCAGAGCCCGAAGCATCGGGGCTATAAGAGGTTTGTACCTCGACCGCAGTCCTCCCGAGGTACCCTCCCACTCCTAGCCTTTCCGCCCAATCCACACTGCGTCAATCGACCTCCGGCGGCAAGCATACCATCTACGGCGGCCTGTAGTATGAAGCCGATTTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATTTGGAAAGACTGTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTGGGAGAAAATTGACATTGGATTTTGAGGAATTCGTTGGTGGAAAAATTATTTGGTGTCACACAGATGCCATAATTAGTTTTTTTCTGTTTGATTGGTTTACAGGCTTTGCTTTCATCTACATGGAGGATGAGAGAGATGCTGAGGATGCTATCCGTGCACTTGATCGGAGAGAATTTGGTCGAAAGGGCCGCAGACTACGTGTTGAGTGGACGAAACAAGAACGTGGGGTTAGAAGACCTGGTGGAGGAGGTGGTGGAGGTGGAGGAGGTTCGAGGAGATCCTCTACGAATACAAGACCTTCAAAGACTTTATTTGTTATCAACTTTGACCCGTATCATACTAGGACAAGAGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAGTGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAAGAGGATGCCACTAGAGCATTGGAGCTTACAAACATGAGCAAATTGATGGATCGAGTGATTTCAGTGGAATACGCTGTTCGAGATGACGATGAGAAGAGAAATGGATTTAGTCCTGATAGGAATCGTGATAGGTCTCCCGATAGAAAACGACGATCTCCAAGTCCGTATAGAAGAGAGCGAGGAAGTCCTGATTATGGCAATGGTATTACCCGTAGTCCATATAGGAGACAAAGGGCTAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTATCAGAGGGAGAGAGAGAGGGAGAGGGGTTCTCCTGATTATGGTCGTGGTCGTAGTCCGAATCAGAGTCCTTATAGGCGAGAGAGGGAGAGATCAAGTGACCATGGTCGTGGTCGTAGTCCTAATCAGAGTCCTTATAGGAGAGAGAGGGAGAGATCAAGCGACCATGGTCGTGGTCGTAGTCCTAATCAGAGTCCTTATAGGAGGAGAGAGAGGGAGAGATCAAGCGACCATGGTCGTGGTCGTAGTCCTAATCAGAGTCCTTATAGGAGAGAGAGGGAGAGATCAAGCGACCATGCTAGGGCCCCTAGCCATAGCCCTCCCCATCAGAGGGAAAGACCAAATGATGACCGAGTCCGCGACCGAAGCCGCAGTCCTTACGGGAGAGAAAGGGGGAGTCCTACTACCGATGGACGTGGCACTAGCCATAGTCCTCGCGATAGAGAGAGGTCAAACCCAGACAATGGTCACGATCAGCGGCTGAATACAGCCGAACCCGAACCCGAACCCGAACCCGGGGATAGCCCCAGTTATGGTGGGACGACTCAGAGCCCAAAGCACCGTGGATATAGCAGGAGAAGGAGAGATATCTATTTCTTCAACAGGCTGTTGAAGGCTCCAGTACATAATGCTGGCTGTAACAAGAATATCGAACAACCCAGCTTTCGTGCAACACTGATAATGTAG

Coding sequence (CDS)

ATGAAGCCAATCTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATCTGGAAAGACTTTTTAGTCGATATGGGAAAGTTGATAGAGTAGATATGAAATCTGGTTTTGCTTTTATCTACATGGAGGATGAGAGAGAGGCTGAGGACGCTATCCGTGCACTTGATCGGAGAGAATTTGGCCGAAAGGGTCGCAGACTACGTGTTGAGTGGACCAAACAAGAGCGTGGCATTAGAAGACCAGGTGGTGGCAGAGGTGGAGGAGATTCAAGGAGATCCTCTACTAATACAAAACCTTCCAAGACTTTATTTGTTATTAACTTTGACCCATATCATACTAGGACAAGGGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAATGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAGGAGGATGCCACTAGAGCATTGGAGATTACAAACATGAGGTTAGTTTTTTTAGTTACATTGATATTTTCACTTGTTATAGGCAGGTGTGTACACGTTAAGTTATTGGTATGCCTTTTAATTATCATTACTGTGTACAGCAAATTGATGGATCGAGTAATTTCAGTGGAATATGCTGTTCGAGATGACGATGAGAAAAGAAATGGGTATAGTCCAGATAGGACTCGTGATAGGTCTCCCGATAGAAAACGACGATCCCCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTATGGCAATGGTGTTAGCCGCAGTCCATATAGGAAAGTCAGGGCTAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTACCAGAGAGTGAGGGAGAGGGGTTCTCCTGAATATGGTCGAGGTCGTAGTCCCAATCAGAGTCCTTATAGGAGAGAGAGAGAGCGAGAGAGATCAAGTGACCATGCCAGGGCCCCTAGCCATAGTCCTTATAGGAGAGAGCGAGAGCGAGAGAGATCAAGTGACCATGCTAGGGCCCCTAGCCATAGTCCTCCTCCTCCCCATCAGAGGGAAAGACCAAATGGTGACCGAGCCCACAGCGGAATTCACAGTCCTTACGGGAGAGAGAGGGGCAGTCCTACTGATGAACGTCGCACTAGCTATAGTCCTCGTGATAGAGAGAGGTCAAACCCGGACAATGGTCATGATCAGCGGCCAAATACAATAGCCGAACCAGGGGATAGCCCGAGTTATGGTGGGACTCAGAGCCCGAAGCATCGGGGCTATAAGAGGTTTGTACCTCGACCGCAGTCCTCCCGAGGTACCCTCCCACTCCTAGCCTTTCCGCCCAATCCACACTGCGTCAATCGACCTCCGGCGGCAAGCATACCATCTACGGCGGCCTGTAGTATGAAGCCGATTTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATTTGGAAAGACTGTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTGGGAGAAAATTGACATTGGATTTTGAGGAATTCGTTGGTGGAAAAATTATTTGGTGTCACACAGATGCCATAATTAGTTTTTTTCTGTTTGATTGGTTTACAGGCTTTGCTTTCATCTACATGGAGGATGAGAGAGATGCTGAGGATGCTATCCGTGCACTTGATCGGAGAGAATTTGGTCGAAAGGGCCGCAGACTACGTGTTGAGTGGACGAAACAAGAACGTGGGGTTAGAAGACCTGGTGGAGGAGGTGGTGGAGGTGGAGGAGGTTCGAGGAGATCCTCTACGAATACAAGACCTTCAAAGACTTTATTTGTTATCAACTTTGACCCGTATCATACTAGGACAAGAGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAGTGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAAGAGGATGCCACTAGAGCATTGGAGCTTACAAACATGAGCAAATTGATGGATCGAGTGATTTCAGTGGAATACGCTGTTCGAGATGACGATGAGAAGAGAAATGGATTTAGTCCTGATAGGAATCGTGATAGGTCTCCCGATAGAAAACGACGATCTCCAAGTCCGTATAGAAGAGAGCGAGGAAGTCCTGATTATGGCAATGGTATTACCCGTAGTCCATATAGGAGACAAAGGGCTAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTATCAGAGGGAGAGAGAGAGGGAGAGGGGTTCTCCTGATTATGGTCGTGGTCGTAGTCCGAATCAGAGTCCTTATAGGCGAGAGAGGGAGAGATCAAGTGACCATGGTCGTGGTCGTAGTCCTAATCAGAGTCCTTATAGGAGAGAGAGGGAGAGATCAAGCGACCATGGTCGTGGTCGTAGTCCTAATCAGAGTCCTTATAGGAGGAGAGAGAGGGAGAGATCAAGCGACCATGGTCGTGGTCGTAGTCCTAATCAGAGTCCTTATAGGAGAGAGAGGGAGAGATCAAGCGACCATGCTAGGGCCCCTAGCCATAGCCCTCCCCATCAGAGGGAAAGACCAAATGATGACCGAGTCCGCGACCGAAGCCGCAGTCCTTACGGGAGAGAAAGGGGGAGTCCTACTACCGATGGACGTGGCACTAGCCATAGTCCTCGCGATAGAGAGAGGTCAAACCCAGACAATGGTCACGATCAGCGGCTGAATACAGCCGAACCCGAACCCGAACCCGAACCCGGGGATAGCCCCAGTTATGGTGGGACGACTCAGAGCCCAAAGCACCGTGGATATAGCAGGAGAAGGAGAGATATCTATTTCTTCAACAGGCTGTTGAAGGCTCCAGTACATAATGCTGGCTGTAACAAGAATATCGAACAACCCAGCTTTCGTGCAACACTGATAATGTAG

Protein sequence

MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMRLVFLVTLIFSLVIGRCVHVKLLVCLLIIITVYSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERERSSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRERGSPTDERRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHRGYKRFVPRPQSSRGTLPLLAFPPNPHCVNRPPAASIPSTAACSMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGRKLTLDFEEFVGGKIIWCHTDAIISFFLFDWFTGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDRERSNPDNGHDQRLNTAEPEPEPEPGDSPSYGGTTQSPKHRGYSRRRRDIYFFNRLLKAPVHNAGCNKNIEQPSFRATLIM

Homology

[Close]

BLAST of CmoCh16G009620 vs. ExPASy Swiss-Prot
Match: P92965 (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS40 PE=1 SV=2)

HSP 1 Score: 373.6 bits (958), Expect = 6.5e-102
Identity = 228/410 (55.61%), Postives = 274/410 (66.83%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDER+AEDAIRALDR EF
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GRKGRRLRVEWTK ERG    G  R GG SRRSS++ +PSKTLFVINFD  +TRTRDLE+
Sbjct: 61  GRKGRRLRVEWTKSERG----GDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEK 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMRLVFLVTLIFSLVIGRCVHVKLL 180
           HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ +N                        
Sbjct: 121 HFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN------------------------ 180

Query: 181 VCLLIIITVYSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS 240
                     SKLMD+VISVEYAV+DDD + NG+SP+R RDRSP+R+RRSPSPY+RERGS
Sbjct: 181 ---------NSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERRRRSPSPYKRERGS 240

Query: 241 PDYGNGVSR-SPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERE 300
           PDYG G S  + YRK R SPDYG RRSPSPY++ R RGSPEYGR R  N SP RRER   
Sbjct: 241 PDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSR-RGSPEYGRDRRGNDSPRRRERVAS 300

Query: 301 RSSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRER 360
             + ++R+P++       +RER S     P+HS   P ++E P        + SP  R  
Sbjct: 301 -PTKYSRSPNN-------KRERMS-----PNHS---PFKKESPRNGVGE--VESPIER-- 339

Query: 361 GSPTDERRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHR 410
                        R+R RS+P+NG  + P +I        Y G +SP  +
Sbjct: 361 -------------RERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQK 339

[Close]

BLAST of CmoCh16G009620 vs. ExPASy Swiss-Prot
Match: P92966 (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS41 PE=1 SV=2)

HSP 1 Score: 356.3 bits (913), Expect = 1.1e-96
Identity = 221/417 (53.00%), Postives = 261/417 (62.59%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDER+AEDAIRALDR E+
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GR GRRLRVEWTK +RG    G GR GG SRRSS+  +PSKTLFVINFD  +TRTRDLER
Sbjct: 61  GRTGRRLRVEWTKNDRG----GAGRSGG-SRRSSSGLRPSKTLFVINFDAQNTRTRDLER 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMRLVFLVTLIFSLVIGRCVHVKLL 180
           HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ TN                        
Sbjct: 121 HFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNS----------------------- 180

Query: 181 VCLLIIITVYSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS 240
                     SKLMD+VISVEYAV+DDD + NGYSP+R RDRSPDR+RRSPSPYRRERGS
Sbjct: 181 ----------SKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRRRRSPSPYRRERGS 240

Query: 241 PDYGNGVSRSPYRKVRASPDYG-SRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERE 300
           PDYG G S   +++ R SPDYG  RRSPSPY+R R   SP+Y R          R RER 
Sbjct: 241 PDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARL--SPDYKRD--------DRRRERV 300

Query: 301 RSSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRER 360
            S ++    + SP +   E      + +      PPP+++ R                 R
Sbjct: 301 ASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRR---------------ESR 353

Query: 361 GSPTDERRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHRGYKRFVP 417
             P  E+R   S R R +S+P+NG  + P  I E      Y G  SP      R  P
Sbjct: 361 SPPPYEKRRERS-RSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRESPSRSPP 353

[Close]

BLAST of CmoCh16G009620 vs. ExPASy Swiss-Prot
Match: P92964 (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-66
Identity = 160/319 (50.16%), Postives = 194/319 (60.82%), Query Frame = 0


Query: 453 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGRKLTLDFEEFVGGKIIWCHTDAII 512
           M+P+F GNFEY+ RQ DLERLF +YG+VDRVDMKS                         
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS------------------------- 60

Query: 513 SFFLFDWFTGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGG 572
                    G+AF+Y EDERDAEDAIR LD   FG + RRL VEW K ERG  R      
Sbjct: 61  ---------GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPR------ 120

Query: 573 GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL 632
               G  ++ +N +P+KTLFVINFDP  T+  D+E+HF+PYGK+ +VRIRRNF+FVQ+E 
Sbjct: 121 ----GDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFET 180

Query: 633 QEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRE 692
           QEDAT+ALE T  SK++DRV+SVEYA++DDDE+      DRN  RSP   RRS SP  R 
Sbjct: 181 QEDATKALEATQRSKILDRVVSVEYALKDDDER-----DDRNGGRSP---RRSLSPVYRR 240

Query: 693 RGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE 752
           R SPDYG     SP + +R SPDYG  RSP     E +R +G   Y R RSP+       
Sbjct: 241 RPSPDYGR--RPSPGQGRRPSPDYGRARSP-----EYDRYKGPAAYERRRSPDYG----- 254

Query: 753 RERSSDHGRGRSPNQSPYR 772
             RSSD+GR RSP    YR
Sbjct: 301 -RRSSDYGRQRSPGYDRYR 254

[Close]

BLAST of CmoCh16G009620 vs. ExPASy Swiss-Prot
Match: Q9ZPX8 (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS31A PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 8.9e-59
Identity = 145/316 (45.89%), Postives = 186/316 (58.86%), Query Frame = 0


Query: 453 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGRKLTLDFEEFVGGKIIWCHTDAII 512
           M+ ++ GNF+YD R  DLERLFS++G+V RVDMKS                         
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS------------------------- 60

Query: 513 SFFLFDWFTGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVR-RPGGGG 572
                    G+AF+Y EDERDAEDAIR  D   FG   R+L VEW K  +G R +P  G 
Sbjct: 61  ---------GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG- 120

Query: 573 GGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYE 632
                   ++ +N RP+KTLFVINFDP  TR RD+ERHF+PYGK+L+VR+RRNFAFVQ+ 
Sbjct: 121 --------KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFA 180

Query: 633 LQEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRR 692
            QEDAT+AL+ T+ SKL+D+V+SVEYA+R+  E+ + +        +  R+RRSPSP  R
Sbjct: 181 TQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRY--------AGSRRRRSPSPVYR 240

Query: 693 ERGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRR 752
            R SPDY           +R SP+Y   + P+PY+R     R SPDYGR      S Y R
Sbjct: 241 RRPSPDY----------TRRRSPEYDRYKGPAPYER-----RKSPDYGR----RSSDYGR 246

Query: 753 ERERSSDHGRGRSPNQ 768
            R RS  + R RSP Q
Sbjct: 301 ARARSPGYDRSRSPIQ 246

[Close]

BLAST of CmoCh16G009620 vs. ExPASy Swiss-Prot
Match: Q0VCY7 (Serine/arginine-rich splicing factor 1 OS=Bos taurus OX=9913 GN=SRSF1 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-14
Identity = 83/262 (31.68%), Postives = 117/262 (44.66%), Query Frame = 0


Query: 456 IFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGRKLTLDFEEFVGGKIIWCHTDAIISFF 515
           I+ GN   D R  D+E +F +YG +  +D+K+ R          GG              
Sbjct: 18  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR----------GG-------------- 77

Query: 516 LFDWFTGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGGGGG 575
                  FAF+  ED RDAEDA+   D  ++   G RLRVE+ +  RG  R GGGGGGGG
Sbjct: 78  -----PPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRLRVEFPRSGRGTGRGGGGGGGGG 137

Query: 576 GGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRN-FAFVQYELQE 635
               R    +R S+   V++  P     +DL+ H    G +    + R+    V++  +E
Sbjct: 138 APRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 197

Query: 636 DATRALELTNMSKLMDRVISVEY-AVRDDDEKRNGFSPDRNRDRSPDRKR-------RSP 695
           D T A+   + +K         Y  V+ D  +   +   R+R RS  R R       RS 
Sbjct: 198 DMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSY 247

Query: 696 SPYRRERGSPDYGNGITRSPYR 709
           SP RR RGSP Y    +RS  R
Sbjct: 258 SP-RRSRGSPRYSPRHSRSRSR 247

[Close]

BLAST of CmoCh16G009620 vs. ExPASy TrEMBL
Match: A0A6J1EWF2 (serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438592 PE=4 SV=1)

HSP 1 Score: 812.8 bits (2098), Expect = 1.6e-231
Identity = 430/465 (92.47%), Postives = 430/465 (92.47%), Query Frame = 0


Query: 453 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGRKLTLDFEEFVGGKIIWCHTDAII 512
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS                         
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS------------------------- 60

Query: 513 SFFLFDWFTGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGG 572
                    GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGG
Sbjct: 61  ---------GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGG 120

Query: 573 GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL 632
           GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL
Sbjct: 121 GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL 180

Query: 633 QEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRE 692
           QEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRE
Sbjct: 181 QEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRE 240

Query: 693 RGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE 752
           RGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE
Sbjct: 241 RGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE 300

Query: 753 RERSSDHGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSP 812
           RERSSDHGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSP
Sbjct: 301 RERSSDHGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSP 360

Query: 813 YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDR 872
           YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDR
Sbjct: 361 YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDR 420

Query: 873 ERSNPDNGHDQRLNTAEPEPEPEPGDSPSYGGTTQSPKHRGYSRR 918
           ERSNPDNGHDQRLNTAEPEPEPEPGDSPSYGGTTQSPKHRGYS R
Sbjct: 421 ERSNPDNGHDQRLNTAEPEPEPEPGDSPSYGGTTQSPKHRGYSSR 431

[Close]

BLAST of CmoCh16G009620 vs. ExPASy TrEMBL
Match: A0A6J1F1M4 (serine/arginine-rich splicing factor RS40-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111438592 PE=4 SV=1)

HSP 1 Score: 743.4 bits (1918), Expect = 1.2e-210
Identity = 389/390 (99.74%), Postives = 389/390 (99.74%), Query Frame = 0


Query: 528 MEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGGGGGGGSRRSSTNTRP 587
           MEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGGGGGGGSRRSSTNTRP
Sbjct: 1   MEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGGGGGGGSRRSSTNTRP 60

Query: 588 SKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSK 647
           SKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSK
Sbjct: 61  SKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSK 120

Query: 648 LMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGITRSPY 707
           LMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGITRSPY
Sbjct: 121 LMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGITRSPY 180

Query: 708 RRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQ 767
           RRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQ
Sbjct: 181 RRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQ 240

Query: 768 SPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSPYRRERERSSDHARAP 827
           SPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSPYRRERERSSDHARAP
Sbjct: 241 SPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSPYRRERERSSDHARAP 300

Query: 828 SHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDRERSNPDNGHDQRLNT 887
           SHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDRERSNPDNGHDQRLNT
Sbjct: 301 SHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDRERSNPDNGHDQRLNT 360

Query: 888 AEPEPEPEPGDSPSYGGTTQSPKHRGYSRR 918
           AEPEPEPEPGDSPSYGGTTQSPKHRGYS R
Sbjct: 361 AEPEPEPEPGDSPSYGGTTQSPKHRGYSSR 390

[Close]

BLAST of CmoCh16G009620 vs. ExPASy TrEMBL
Match: A0A6J1HPZ2 (serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465037 PE=4 SV=1)

HSP 1 Score: 731.9 bits (1888), Expect = 3.5e-207
Identity = 395/465 (84.95%), Postives = 401/465 (86.24%), Query Frame = 0


Query: 453 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGRKLTLDFEEFVGGKIIWCHTDAII 512
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS                         
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS------------------------- 60

Query: 513 SFFLFDWFTGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGG 572
                    GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERG+RRPGGGGG
Sbjct: 61  ---------GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGGG 120

Query: 573 GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL 632
           GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL
Sbjct: 121 GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL 180

Query: 633 QEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRE 692
           Q+DATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYR+E
Sbjct: 181 QDDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRKE 240

Query: 693 RGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE 752
           RGSPDYGNGI+ SPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE
Sbjct: 241 RGSPDYGNGISPSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE 300

Query: 753 RERSSDHGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSP 812
           RERSSDHGRGRSPNQSPY                      RRERERS DHGRGRSPNQSP
Sbjct: 301 RERSSDHGRGRSPNQSPY----------------------RRERERSRDHGRGRSPNQSP 360

Query: 813 YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDR 872
           YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRG+S+SPRDR
Sbjct: 361 YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGSSYSPRDR 407

Query: 873 ERSNPDNGHDQRLNTAEPEPEPEPGDSPSYGGTTQSPKHRGYSRR 918
           ERSNPDNGHDQRLNT     EPEPGDSPSYGGTTQSPKHRGYS R
Sbjct: 421 ERSNPDNGHDQRLNTV--VAEPEPGDSPSYGGTTQSPKHRGYSSR 407

[Close]

BLAST of CmoCh16G009620 vs. ExPASy TrEMBL
Match: A0A6J1EWF6 (serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438593 PE=4 SV=1)

HSP 1 Score: 728.4 bits (1879), Expect = 3.9e-206
Identity = 380/419 (90.69%), Postives = 382/419 (91.17%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMRLVFLVTLIFSLVIGRCVHVKLL 180
           HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNM                       
Sbjct: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNM----------------------- 180

Query: 181 VCLLIIITVYSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS 240
                     SKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS
Sbjct: 181 ----------SKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS 240

Query: 241 PDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERER 300
           PDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERER
Sbjct: 241 PDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERER 300

Query: 301 SSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRERG 360
           SSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRERG
Sbjct: 301 SSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRERG 360

Query: 361 SPTDERRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHRGYKRFVPRPQ 420
           SPTDERRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHRGYK   P+ +
Sbjct: 361 SPTDERRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHRGYKSRSPQAE 386

[Close]

BLAST of CmoCh16G009620 vs. ExPASy TrEMBL
Match: A0A6J1HMP1 (serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465047 PE=4 SV=1)

HSP 1 Score: 708.4 bits (1827), Expect = 4.1e-200
Identity = 374/419 (89.26%), Postives = 377/419 (89.98%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMRLVFLVTLIFSLVIGRCVHVKLL 180
           HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNM                       
Sbjct: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNM----------------------- 180

Query: 181 VCLLIIITVYSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS 240
                     SKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS
Sbjct: 181 ----------SKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS 240

Query: 241 PDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERER 300
           PDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERER
Sbjct: 241 PDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERER 300

Query: 301 SSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRERG 360
           SSDHARAPSHSPYR  RERERSSDH RAPSHS PPPHQRERPNGDRAHSGIHSPYGRERG
Sbjct: 301 SSDHARAPSHSPYR--RERERSSDHVRAPSHS-PPPHQRERPNGDRAHSGIHSPYGRERG 360

Query: 361 SPTDERRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHRGYKRFVPRPQ 420
           SPT+E RTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHRGYK   P+ +
Sbjct: 361 SPTEEHRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHRGYKSRSPQAE 383

[Close]

BLAST of CmoCh16G009620 vs. NCBI nr
Match: KAG6577485.1 (Serine/arginine-rich splicing factor RS40, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1241.1 bits (3210), Expect = 0.0e+00
Identity = 687/875 (78.51%), Postives = 701/875 (80.11%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF
Sbjct: 143 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 202

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER
Sbjct: 203 GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 262

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMRLVFLVTLIFSLVIGRCVHVKLL 180
           HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNM                       
Sbjct: 263 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNM----------------------- 322

Query: 181 VCLLIIITVYSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS 240
                     SKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS
Sbjct: 323 ----------SKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS 382

Query: 241 PDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERER 300
           PDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYR  RERER
Sbjct: 383 PDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYR--RERER 442

Query: 301 SSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRERG 360
           SSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRERG
Sbjct: 443 SSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRERG 502

Query: 361 SPTDERRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHRGYKRFVPRPQS 420
           SPTDERRTSYSPRDRER+                    S G  ++   +       + +S
Sbjct: 503 SPTDERRTSYSPRDRERAR-------------------SIGAIRAVHLKQRNEEYLQSES 562

Query: 421 SRGTLPLLAFPPNPHCVNRPPAASIPSTAACSMKPIFCGNFEYDARQPDLERLFSRYGKV 480
               + L                      + SMKPIFCGNFEYDARQPDLERLFSRYGKV
Sbjct: 563 RLRLVGLF--------------------GSGSMKPIFCGNFEYDARQPDLERLFSRYGKV 622

Query: 481 DRVDMKSGRKLTLDFEEFVGGKIIWCHTDAIISFFLFDWFTGFAFIYMEDERDAEDAIRA 540
           DRVDMKS                                  GFAFIYMEDERDAEDAIRA
Sbjct: 623 DRVDMKS----------------------------------GFAFIYMEDERDAEDAIRA 682

Query: 541 LDRREFGRKGRRLRVEWTKQERGVRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 600
           LDRREFGRKGRRLRVEWTKQERG+RRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH
Sbjct: 683 LDRREFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 742

Query: 601 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 660
           TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALE+TNMSKLMDRVISVEYAVR
Sbjct: 743 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALEVTNMSKLMDRVISVEYAVR 802

Query: 661 DDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGITRSPYRRQRASPDYGSRR 720
           DDDEKRNGFSPDRNRDRSPDRKRRSPSPY+RERGSPDYGNGITRSPYRRQRASPDYGSRR
Sbjct: 803 DDDEKRNGFSPDRNRDRSPDRKRRSPSPYKRERGSPDYGNGITRSPYRRQRASPDYGSRR 862

Query: 721 SPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSSDH 780
           SPSPYQRERERERGSPDYGRGRSPNQSPY                               
Sbjct: 863 SPSPYQRERERERGSPDYGRGRSPNQSPY------------------------------- 866

Query: 781 GRGRSPNQSPYRRRERERSSDHGRGRSPNQSPYRRERERSSDHARAPSHSPPHQRERPND 840
                       RRERERSSDHGRGRSPNQSPYRRERERSSDHARAPSHSPPHQRERPND
Sbjct: 923 ------------RRERERSSDHGRGRSPNQSPYRRERERSSDHARAPSHSPPHQRERPND 866

Query: 841 DRVRDRSRSPYGRERGSPTTDGRGTSHSPRDRERS 876
           DRVR+RSRSPYGRERGSPTTDGRGTS+SPRDRER+
Sbjct: 983 DRVRNRSRSPYGRERGSPTTDGRGTSYSPRDRERA 866

[Close]

BLAST of CmoCh16G009620 vs. NCBI nr
Match: XP_022932224.1 (serine/arginine-rich splicing factor RS40-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 812.8 bits (2098), Expect = 3.2e-231
Identity = 430/465 (92.47%), Postives = 430/465 (92.47%), Query Frame = 0


Query: 453 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGRKLTLDFEEFVGGKIIWCHTDAII 512
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS                         
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS------------------------- 60

Query: 513 SFFLFDWFTGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGG 572
                    GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGG
Sbjct: 61  ---------GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGG 120

Query: 573 GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL 632
           GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL
Sbjct: 121 GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL 180

Query: 633 QEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRE 692
           QEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRE
Sbjct: 181 QEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRE 240

Query: 693 RGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE 752
           RGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE
Sbjct: 241 RGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE 300

Query: 753 RERSSDHGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSP 812
           RERSSDHGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSP
Sbjct: 301 RERSSDHGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSP 360

Query: 813 YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDR 872
           YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDR
Sbjct: 361 YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDR 420

Query: 873 ERSNPDNGHDQRLNTAEPEPEPEPGDSPSYGGTTQSPKHRGYSRR 918
           ERSNPDNGHDQRLNTAEPEPEPEPGDSPSYGGTTQSPKHRGYS R
Sbjct: 421 ERSNPDNGHDQRLNTAEPEPEPEPGDSPSYGGTTQSPKHRGYSSR 431

[Close]

BLAST of CmoCh16G009620 vs. NCBI nr
Match: XP_023553356.1 (serine/arginine-rich splicing factor RS40-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 772.3 bits (1993), Expect = 4.8e-219
Identity = 416/465 (89.46%), Postives = 420/465 (90.32%), Query Frame = 0


Query: 453 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGRKLTLDFEEFVGGKIIWCHTDAII 512
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS                         
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS------------------------- 60

Query: 513 SFFLFDWFTGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGG 572
                    GFAFIYMEDERDAEDAIRALD+REFGRKGRRLRVEWTKQERG+RRPGGGGG
Sbjct: 61  ---------GFAFIYMEDERDAEDAIRALDQREFGRKGRRLRVEWTKQERGIRRPGGGGG 120

Query: 573 GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL 632
           GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL
Sbjct: 121 GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL 180

Query: 633 QEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRE 692
           QEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSP RRE
Sbjct: 181 QEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPCRRE 240

Query: 693 RGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE 752
           RGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRS NQSPYRRE
Sbjct: 241 RGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSLNQSPYRRE 300

Query: 753 RERSSDHGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSP 812
           RERSSDHGRGRSPNQSPYRRERERSSD GRGRSPNQSP+ RRERERSSDHGRGRSPNQSP
Sbjct: 301 RERSSDHGRGRSPNQSPYRRERERSSDIGRGRSPNQSPF-RRERERSSDHGRGRSPNQSP 360

Query: 813 YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDR 872
            RRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTS+SPRDR
Sbjct: 361 SRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSYSPRDR 420

Query: 873 ERSNPDNGHDQRLNTAEPEPEPEPGDSPSYGGTTQSPKHRGYSRR 918
           ERSNPDNGHDQRLNT   EPEPEP DSPSYGGTTQSPK RGYS R
Sbjct: 421 ERSNPDNGHDQRLNTVVAEPEPEPVDSPSYGGTTQSPKRRGYSSR 430

[Close]

BLAST of CmoCh16G009620 vs. NCBI nr
Match: XP_022932225.1 (serine/arginine-rich splicing factor RS40-like isoform X2 [Cucurbita moschata] >XP_022932226.1 serine/arginine-rich splicing factor RS40-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 743.4 bits (1918), Expect = 2.4e-210
Identity = 389/390 (99.74%), Postives = 389/390 (99.74%), Query Frame = 0


Query: 528 MEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGGGGGGGSRRSSTNTRP 587
           MEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGGGGGGGSRRSSTNTRP
Sbjct: 1   MEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGGGGGGGSRRSSTNTRP 60

Query: 588 SKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSK 647
           SKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSK
Sbjct: 61  SKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSK 120

Query: 648 LMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGITRSPY 707
           LMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGITRSPY
Sbjct: 121 LMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGITRSPY 180

Query: 708 RRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQ 767
           RRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQ
Sbjct: 181 RRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQ 240

Query: 768 SPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSPYRRERERSSDHARAP 827
           SPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSPYRRERERSSDHARAP
Sbjct: 241 SPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSPYRRERERSSDHARAP 300

Query: 828 SHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDRERSNPDNGHDQRLNT 887
           SHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDRERSNPDNGHDQRLNT
Sbjct: 301 SHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDRERSNPDNGHDQRLNT 360

Query: 888 AEPEPEPEPGDSPSYGGTTQSPKHRGYSRR 918
           AEPEPEPEPGDSPSYGGTTQSPKHRGYS R
Sbjct: 361 AEPEPEPEPGDSPSYGGTTQSPKHRGYSSR 390

[Close]

BLAST of CmoCh16G009620 vs. NCBI nr
Match: XP_022965059.1 (serine/arginine-rich splicing factor RS40-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 731.9 bits (1888), Expect = 7.2e-207
Identity = 395/465 (84.95%), Postives = 401/465 (86.24%), Query Frame = 0


Query: 453 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGRKLTLDFEEFVGGKIIWCHTDAII 512
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS                         
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS------------------------- 60

Query: 513 SFFLFDWFTGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGG 572
                    GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERG+RRPGGGGG
Sbjct: 61  ---------GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGGG 120

Query: 573 GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL 632
           GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL
Sbjct: 121 GGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL 180

Query: 633 QEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRE 692
           Q+DATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYR+E
Sbjct: 181 QDDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRKE 240

Query: 693 RGSPDYGNGITRSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE 752
           RGSPDYGNGI+ SPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE
Sbjct: 241 RGSPDYGNGISPSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRE 300

Query: 753 RERSSDHGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRRERERSSDHGRGRSPNQSP 812
           RERSSDHGRGRSPNQSPY                      RRERERS DHGRGRSPNQSP
Sbjct: 301 RERSSDHGRGRSPNQSPY----------------------RRERERSRDHGRGRSPNQSP 360

Query: 813 YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGTSHSPRDR 872
           YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRG+S+SPRDR
Sbjct: 361 YRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGSSYSPRDR 407

Query: 873 ERSNPDNGHDQRLNTAEPEPEPEPGDSPSYGGTTQSPKHRGYSRR 918
           ERSNPDNGHDQRLNT     EPEPGDSPSYGGTTQSPKHRGYS R
Sbjct: 421 ERSNPDNGHDQRLNTV--VAEPEPGDSPSYGGTTQSPKHRGYSSR 407

[Close]

BLAST of CmoCh16G009620 vs. TAIR 10
Match: AT4G25500.1 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 373.6 bits (958), Expect = 4.6e-103
Identity = 228/410 (55.61%), Postives = 274/410 (66.83%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDER+AEDAIRALDR EF
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GRKGRRLRVEWTK ERG    G  R GG SRRSS++ +PSKTLFVINFD  +TRTRDLE+
Sbjct: 61  GRKGRRLRVEWTKSERG----GDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEK 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMRLVFLVTLIFSLVIGRCVHVKLL 180
           HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ +N                        
Sbjct: 121 HFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN------------------------ 180

Query: 181 VCLLIIITVYSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS 240
                     SKLMD+VISVEYAV+DDD + NG+SP+R RDRSP+R+RRSPSPY+RERGS
Sbjct: 181 ---------NSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERRRRSPSPYKRERGS 240

Query: 241 PDYGNGVSR-SPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERE 300
           PDYG G S  + YRK R SPDYG RRSPSPY++ R RGSPEYGR R  N SP RRER   
Sbjct: 241 PDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSR-RGSPEYGRDRRGNDSPRRRERVAS 300

Query: 301 RSSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRER 360
             + ++R+P++       +RER S     P+HS   P ++E P        + SP  R  
Sbjct: 301 -PTKYSRSPNN-------KRERMS-----PNHS---PFKKESPRNGVGE--VESPIER-- 339

Query: 361 GSPTDERRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHR 410
                        R+R RS+P+NG  + P +I        Y G +SP  +
Sbjct: 361 -------------RERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQK 339

[Close]

BLAST of CmoCh16G009620 vs. TAIR 10
Match: AT4G25500.4 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 373.6 bits (958), Expect = 4.6e-103
Identity = 228/410 (55.61%), Postives = 274/410 (66.83%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDER+AEDAIRALDR EF
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GRKGRRLRVEWTK ERG    G  R GG SRRSS++ +PSKTLFVINFD  +TRTRDLE+
Sbjct: 61  GRKGRRLRVEWTKSERG----GDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEK 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMRLVFLVTLIFSLVIGRCVHVKLL 180
           HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ +N                        
Sbjct: 121 HFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN------------------------ 180

Query: 181 VCLLIIITVYSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS 240
                     SKLMD+VISVEYAV+DDD + NG+SP+R RDRSP+R+RRSPSPY+RERGS
Sbjct: 181 ---------NSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERRRRSPSPYKRERGS 240

Query: 241 PDYGNGVSR-SPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERE 300
           PDYG G S  + YRK R SPDYG RRSPSPY++ R RGSPEYGR R  N SP RRER   
Sbjct: 241 PDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSR-RGSPEYGRDRRGNDSPRRRERVAS 300

Query: 301 RSSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRER 360
             + ++R+P++       +RER S     P+HS   P ++E P        + SP  R  
Sbjct: 301 -PTKYSRSPNN-------KRERMS-----PNHS---PFKKESPRNGVGE--VESPIER-- 339

Query: 361 GSPTDERRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHR 410
                        R+R RS+P+NG  + P +I        Y G +SP  +
Sbjct: 361 -------------RERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQK 339

[Close]

BLAST of CmoCh16G009620 vs. TAIR 10
Match: AT5G52040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 356.3 bits (913), Expect = 7.7e-98
Identity = 221/417 (53.00%), Postives = 261/417 (62.59%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDER+AEDAIRALDR E+
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GR GRRLRVEWTK +RG    G GR GG SRRSS+  +PSKTLFVINFD  +TRTRDLER
Sbjct: 61  GRTGRRLRVEWTKNDRG----GAGRSGG-SRRSSSGLRPSKTLFVINFDAQNTRTRDLER 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMRLVFLVTLIFSLVIGRCVHVKLL 180
           HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ TN                        
Sbjct: 121 HFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNS----------------------- 180

Query: 181 VCLLIIITVYSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS 240
                     SKLMD+VISVEYAV+DDD + NGYSP+R RDRSPDR+RRSPSPYRRERGS
Sbjct: 181 ----------SKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRRRRSPSPYRRERGS 240

Query: 241 PDYGNGVSRSPYRKVRASPDYG-SRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERE 300
           PDYG G S   +++ R SPDYG  RRSPSPY+R R   SP+Y R          R RER 
Sbjct: 241 PDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARL--SPDYKRD--------DRRRERV 300

Query: 301 RSSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRER 360
            S ++    + SP +   E      + +      PPP+++ R                 R
Sbjct: 301 ASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRR---------------ESR 353

Query: 361 GSPTDERRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHRGYKRFVP 417
             P  E+R   S R R +S+P+NG  + P  I E      Y G  SP      R  P
Sbjct: 361 SPPPYEKRRERS-RSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRESPSRSPP 353

[Close]

BLAST of CmoCh16G009620 vs. TAIR 10
Match: AT5G52040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-97
Identity = 219/407 (53.81%), Postives = 259/407 (63.64%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDER+AEDAIRALDR E+
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GR GRRLRVEWTK +RG    G GR GG SRRSS+  +PSKTLFVINFD  +TRTRDLER
Sbjct: 61  GRTGRRLRVEWTKNDRG----GAGRSGG-SRRSSSGLRPSKTLFVINFDAQNTRTRDLER 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMRLVFLVTLIFSLVIGRCVHVKLL 180
           HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ TN                        
Sbjct: 121 HFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNS----------------------- 180

Query: 181 VCLLIIITVYSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGS 240
                     SKLMD+VISVEYAV+DDD + NGYSP+R RDRSPDR+RRSPSPYRRERGS
Sbjct: 181 ----------SKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRRRRSPSPYRRERGS 240

Query: 241 PDYGNGVSRSPYRKVRASPDYG-SRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERE 300
           PDYG G S   +++ R SPDYG  RRSPSPY+R R   SP+Y R          R RER 
Sbjct: 241 PDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARL--SPDYKRD--------DRRRERV 300

Query: 301 RSSDHARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYGRER 360
            S ++    + SP +   E      + +      PPP+++ R                 R
Sbjct: 301 ASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRR---------------ESR 343

Query: 361 GSPTDERRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSP 407
             P  E+R   S R R +S+P+NG  + P  I E      Y G  SP
Sbjct: 361 SPPPYEKRRERS-RSRSKSSPENGQVESPGQIMEVEAGRGYDGADSP 343

[Close]

BLAST of CmoCh16G009620 vs. TAIR 10
Match: AT4G25500.3 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 323.2 bits (827), Expect = 7.2e-88
Identity = 203/330 (61.52%), Postives = 242/330 (73.33%), Query Frame = 0


Query: 522 GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGVRRPGGGGGGGGGGSRRS 581
           GFAF+YMEDERDAEDAIRALDR EFGRKGRRLRVEWTK ER      GG    GGGSRRS
Sbjct: 3   GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSER------GGDKRSGGGSRRS 62

Query: 582 STNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALE 641
           S++ RPSKTLFVINFD  +TRTRDLE+HF+PYGKI++VRIRRNFAF+QYE QEDATRAL+
Sbjct: 63  SSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALD 122

Query: 642 LTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNG 701
            +N SKLMD+VISVEYAV+DDD + NG SP+R RDRSP+R+RRSPSPY+RERGSPDYG G
Sbjct: 123 ASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERRRRSPSPYKRERGSPDYGRG 182

Query: 702 ITR-SPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRER------- 761
            +  + YR++R SPDYG RRSPSPY++ R   RGSP+YGR R  N SP RRER       
Sbjct: 183 ASPVAAYRKERTSPDYGRRRSPSPYKKSR---RGSPEYGRDRRGNDSPRRRERVASPTKY 242

Query: 762 ERSSDHGRGR-SPNQSPYRRERERSSDHGRGRSPNQSPYRRRERERSS-DHGRGRSPNQS 821
            RS ++ R R SPN SP+++E  R+     G    +SP  RRER RSS ++G+  SP  S
Sbjct: 243 SRSPNNKRERMSPNHSPFKKESPRN-----GVGEVESPIERRERSRSSPENGQVESPG-S 302

Query: 822 PYRRERERSSDHARAPSHSPPHQRERPNDD 842
             RR+ +   D A +P       R  P D+
Sbjct: 303 IGRRDSDGGYDGAESPMQKSRSPRSPPADE 317

The following BLAST results are available for this feature:

BLAST of CmoCh16G009620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92965	6.5e-102	55.61	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
P92966	1.1e-96	53.00	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
P92964	1.5e-66	50.16	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS3...	[more]
Q9ZPX8	8.9e-59	45.89	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
Q0VCY7	1.3e-14	31.68	Serine/arginine-rich splicing factor 1 OS=Bos taurus OX=9913 GN=SRSF1 PE=2 SV=1	[more]

BLAST of CmoCh16G009620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWF2	1.6e-231	92.47	serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucurbita moschata ...	[more]
A0A6J1F1M4	1.2e-210	99.74	serine/arginine-rich splicing factor RS40-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1HPZ2	3.5e-207	84.95	serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1EWF6	3.9e-206	90.69	serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucurbita moschata ...	[more]
A0A6J1HMP1	4.1e-200	89.26	serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucurbita maxima OX...	[more]

BLAST of CmoCh16G009620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577485.1	0.0e+00	78.51	Serine/arginine-rich splicing factor RS40, partial [Cucurbita argyrosperma subsp...	[more]
XP_022932224.1	3.2e-231	92.47	serine/arginine-rich splicing factor RS40-like isoform X1 [Cucurbita moschata]	[more]
XP_023553356.1	4.8e-219	89.46	serine/arginine-rich splicing factor RS40-like isoform X1 [Cucurbita pepo subsp....	[more]
XP_022932225.1	2.4e-210	99.74	serine/arginine-rich splicing factor RS40-like isoform X2 [Cucurbita moschata] >...	[more]
XP_022965059.1	7.2e-207	84.95	serine/arginine-rich splicing factor RS40-like isoform X1 [Cucurbita maxima]	[more]

BLAST of CmoCh16G009620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25500.1	4.6e-103	55.61	arginine/serine-rich splicing factor 35	[more]
AT4G25500.4	4.6e-103	55.61	arginine/serine-rich splicing factor 35	[more]
AT5G52040.1	7.7e-98	53.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G52040.2	1.3e-97	53.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G25500.3	7.2e-88	61.52	arginine/serine-rich splicing factor 35	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 590..656 e-value: 1.5E-16 score: 71.0 coord: 455..556 e-value: 1.3E-9 score: 48.0 coord: 3..70 e-value: 3.6E-15 score: 66.4 coord: 102..168 e-value: 2.8E-11 score: 53.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..62 e-value: 1.3E-12 score: 47.4 coord: 591..653 e-value: 1.1E-11 score: 44.4 coord: 103..154 e-value: 1.1E-9 score: 38.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 2..74 score: 16.534245
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 101..178 score: 12.98672
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 454..560 score: 14.299986
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 589..660 score: 15.101589
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 584..669 e-value: 2.3E-19 score: 71.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 94..249 e-value: 2.1E-14 score: 55.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..93 e-value: 9.6E-20 score: 73.0 coord: 446..583 e-value: 1.1E-19 score: 72.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 560..585
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 746..852
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 664..917
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..327
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..426
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 865..891
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 664..691
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 338..383
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 722..738
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..236
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 4..156 coord: 188..244 coord: 456..486
None	No IPR available	PANTHER	PTHR23147:SF165	BNAC01G41640D PROTEIN	coord: 520..697
None	No IPR available	PANTHER	PTHR23147:SF165	BNAC01G41640D PROTEIN	coord: 456..486
None	No IPR available	PANTHER	PTHR23147:SF165	BNAC01G41640D PROTEIN	coord: 4..156 coord: 188..244
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 520..697
None	No IPR available	CDD	cd12234	RRM1_AtRSp31_like	coord: 2..73 e-value: 1.27917E-35 score: 127.244
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..157
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 456..664

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G009620.1	CmoCh16G009620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding