CmoCh16G009150 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G009150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	21.7 kDa class VI heat shock protein
Location	Cmo_Chr16: 5520923 .. 5521723 (+)
RNA-Seq Expression	CmoCh16G009150
Synteny	CmoCh16G009150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTGCGCGTGGTTTAGTTTCCAGTTGTCTAATATAGCCTTTGAGGTTCGTAGGTGGGTGCTGCCTACACCATTGCCATGGTGTCTTGCGGCGGCAGCTATTGTCCTCGCCTCTTAATCACCCCCCCTTTTTTATTTTTACCAAAATTTTTACTCTTGTGATAGGTCTTTCAATTATAAATTAGACTTTAGAGTCTACTGGACAAAAATTAATTAGTTAGAATCGTATTATATATAAAATTTAAACTTAGGAAAACATATTAAATACAAAATTGAAAGTGAGTTTTAAATTTGACGGTGGTTAAGAGCATTCTCAAACATTTATTTTGCAGAGAGTTGAAGTTGAAAGGATGATAAAAGAGAGAATTGATTTTAATGGTGAAATTATGTTATCAACTTCGTTTTAAAAGACAATCCAAAGGGCCTTCCAACTCTCTCTCTCTCTGTAGCTACTCATTCAAAAAAGATTGGGTGATATGTTTGATTGACACAAACCAAAATTTTACAAACAGAACCTTGGAGAAACGCTTTGCAAATCTCCGTAGAAGACGGGAAGGTGTTAGAGATAAGTGGTCAGTTGAAGGAACAACAAAGAGAAGCCACCAAGCTGGTCGATTGGCGATGTGCCAATTGGTGGGAGCACGGATTCGTTCGGCGACTCGAGTTGCCTGAAGATGTTGATTGTTGTAGAATAGAGGCTCAGATGAAGAATGACACGATTCTTGAGATCAAGATTCCCAAGTTAGAATCGAATAGAGGTGCTGAATCAAAGAGCAAGGATTCTGATCAAGATGTTTAA

mRNA sequence

ATGCACTGCGCGTGGTTTAGTTTCCAGTTGTCTAATATAGCCTTTGAGGTTCGAAAACATATTAAATACAAAATTGAAAAACCTTGGAGAAACGCTTTGCAAATCTCCGTAGAAGACGGGAAGGTGTTAGAGATAAGTGGTCAGTTGAAGGAACAACAAAGAGAAGCCACCAAGCTGGTCGATTGGCGATGTGCCAATTGGTGGGAGCACGGATTCGTTCGGCGACTCGAGTTGCCTGAAGATGTTGATTGTTGTAGAATAGAGGCTCAGATGAAGAATGACACGATTCTTGAGATCAAGATTCCCAAGTTAGAATCGAATAGAGGTGCTGAATCAAAGAGCAAGGATTCTGATCAAGATGTTTAA

Coding sequence (CDS)

ATGCACTGCGCGTGGTTTAGTTTCCAGTTGTCTAATATAGCCTTTGAGGTTCGAAAACATATTAAATACAAAATTGAAAAACCTTGGAGAAACGCTTTGCAAATCTCCGTAGAAGACGGGAAGGTGTTAGAGATAAGTGGTCAGTTGAAGGAACAACAAAGAGAAGCCACCAAGCTGGTCGATTGGCGATGTGCCAATTGGTGGGAGCACGGATTCGTTCGGCGACTCGAGTTGCCTGAAGATGTTGATTGTTGTAGAATAGAGGCTCAGATGAAGAATGACACGATTCTTGAGATCAAGATTCCCAAGTTAGAATCGAATAGAGGTGCTGAATCAAAGAGCAAGGATTCTGATCAAGATGTTTAA

Protein sequence

MHCAWFSFQLSNIAFEVRKHIKYKIEKPWRNALQISVEDGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEIKIPKLESNRGAESKSKDSDQDV

Homology

[Close]

BLAST of CmoCh16G009150 vs. ExPASy Swiss-Prot
Match: Q9FIT9 (21.7 kDa class VI heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP21.7 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-13
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 21  IKYKIEKPWRNALQISVE-DGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELP 80
           +K  I    +N +Q+ V+ +G+V+EISGQ    ++ AT   DWR   WWEHG+VRRLELP
Sbjct: 100 LKSDIPVVGKNNVQVYVDINGRVMEISGQWNSNKKAATN-SDWRSGRWWEHGYVRRLELP 159

Query: 81  EDVDCCRIEAQMKND---TILEIKIPKLES 107
            D D    EA + N+   + LEI+IPK+ S
Sbjct: 160 SDADAKYSEAFLSNNDDYSFLEIRIPKINS 188

[Close]

BLAST of CmoCh16G009150 vs. ExPASy Swiss-Prot
Match: Q6AUW3 (22.3 kDa class VI heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=HSP22.3 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-09
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 61  DWRCANWWEHGFVRRLELPEDVDCCRIEAQMKN-DTILEIKIPK 104
           DWR   WWEHGFVRR+ELPED D  ++EA   + + +LEIK+PK
Sbjct: 148 DWRAGRWWEHGFVRRVELPEDADWRKVEAFFDDGEGLLEIKVPK 191

[Close]

BLAST of CmoCh16G009150 vs. ExPASy Swiss-Prot
Match: P27397 (18.0 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.7e-05
Identity = 25/79 (31.65%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 30  RNALQISVEDGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEA 89
           +  +++ VE+GKVL+ISG+  +++ E  K   W    +    F+RR  LPE+ +   ++A
Sbjct: 74  KEEVKVEVEEGKVLQISGERNKEKEE--KNNKWHRVEFSSGKFLRRFRLPENANVDEVKA 133

Query: 90  QMKNDTILEIKIPKLESNR 109
            M+N  +L + +PK+E  +
Sbjct: 134 GMENG-VLTVTVPKVEMKK 149

[Close]

BLAST of CmoCh16G009150 vs. ExPASy Swiss-Prot
Match: Q84Q72 (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.0e-05
Identity = 27/79 (34.18%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 30  RNALQISVEDGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEA 89
           +  +++ VEDG VL+ISG+  ++Q E T    W         F+RR  LPE+    +I+A
Sbjct: 76  KEEVKVEVEDGNVLQISGERSKEQEEKTD--KWHRVERSSGKFLRRFRLPENTKPEQIKA 135

Query: 90  QMKNDTILEIKIPKLESNR 109
            M+N  +L + +PK E  +
Sbjct: 136 SMENG-VLTVTVPKEEPKK 151

[Close]

BLAST of CmoCh16G009150 vs. ExPASy Swiss-Prot
Match: P31673 (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 30  RNALQISVEDGKVLEISGQ-LKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIE 89
           +  +++ VEDG VL+ISG+ +KEQ+ +  K   W         F+RR  LPE+    +I+
Sbjct: 69  KEEVKVEVEDGNVLQISGERIKEQEEKTDK---WHRVERSSGKFLRRFRLPENTKPEQIK 128

Query: 90  AQMKNDTILEIKIPKLESNR 109
           A M+N  +L + +PK E  +
Sbjct: 129 ASMENG-VLTVTVPKEEPKK 144

[Close]

BLAST of CmoCh16G009150 vs. ExPASy TrEMBL
Match: A0A6J1J4E5 (21.7 kDa class VI heat shock protein OS=Cucurbita maxima OX=3661 GN=LOC111483304 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 8.7e-47
Identity = 91/101 (90.10%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 21  IKYKIEKPWRNALQISVEDGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPE 80
           ++ ++++PWRNALQISVEDGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPE
Sbjct: 122 LQAELQEPWRNALQISVEDGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPE 181

Query: 81  DVDCCRIEAQMKNDTILEIKIPKLESNRGAESKSKDSDQDV 122
           DVDCCRIEA+MKNDTILEIKIPKLE+NRGA+SKSKDSDQDV
Sbjct: 182 DVDCCRIEARMKNDTILEIKIPKLETNRGADSKSKDSDQDV 222

[Close]

BLAST of CmoCh16G009150 vs. ExPASy TrEMBL
Match: H6TB45 (HSP23.0 OS=Citrullus lanatus OX=3654 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31
Identity = 70/101 (69.31%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 21  IKYKIEKPWRNALQISVEDGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPE 80
           ++ ++ + WRNALQIS+EDGKVLEISGQLKEQQRE     DWR  NWWEHG+VRRLELPE
Sbjct: 99  LQAELLEAWRNALQISIEDGKVLEISGQLKEQQREGRTTFDWRSVNWWEHGYVRRLELPE 158

Query: 81  DVDCCRIEAQMKNDTILEIKIPKLESNRGAESKSKD-SDQD 121
           D D  R+EA+MKND +LEIKIPK E+N G ES SKD SD+D
Sbjct: 159 DADWSRMEARMKNDHVLEIKIPKSETNEGVESNSKDNSDED 199

[Close]

BLAST of CmoCh16G009150 vs. ExPASy TrEMBL
Match: A0A0A0L6D5 (SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G081340 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.3e-31
Identity = 71/102 (69.61%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 21  IKYKIEKPWRNALQISV-EDGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELP 80
           ++ ++ + WRNALQIS+ EDGKVLEISGQLKEQQRE    VDWR  +WWEHG+VRRLELP
Sbjct: 98  LQAELLEAWRNALQISIEEDGKVLEISGQLKEQQREGKTTVDWRRVHWWEHGYVRRLELP 157

Query: 81  EDVDCCRIEAQMKNDTILEIKIPKLESNRGAESKSKD-SDQD 121
           ED D  R+EA++KND +LEIKIPKLE+N+G+ESKSKD SD+D
Sbjct: 158 EDADSSRMEARIKNDLVLEIKIPKLETNQGSESKSKDNSDED 199

[Close]

BLAST of CmoCh16G009150 vs. ExPASy TrEMBL
Match: A0A5D3C0M7 (21.7 kDa class VI heat shock protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00120 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.8e-31
Identity = 70/102 (68.63%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 21  IKYKIEKPWRNALQISVED-GKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELP 80
           ++ ++ + WRNALQIS+E+ GKVLEISGQL+EQQRE    VDWR  NWWEHGFVRRLELP
Sbjct: 98  LQAELLEAWRNALQISIEEGGKVLEISGQLREQQREGKTTVDWRRVNWWEHGFVRRLELP 157

Query: 81  EDVDCCRIEAQMKNDTILEIKIPKLESNRGAESKSKD-SDQD 121
           ED D  R+EA++KND +LEIKIPKLE+N+ +ESKSKD SD+D
Sbjct: 158 EDADSSRMEARIKNDLVLEIKIPKLETNQSSESKSKDNSDED 199

[Close]

BLAST of CmoCh16G009150 vs. ExPASy TrEMBL
Match: A0A1S3CJA6 (21.7 kDa class VI heat shock protein OS=Cucumis melo OX=3656 GN=LOC103501614 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.8e-31
Identity = 70/102 (68.63%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 21  IKYKIEKPWRNALQISVED-GKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELP 80
           ++ ++ + WRNALQIS+E+ GKVLEISGQL+EQQRE    VDWR  NWWEHGFVRRLELP
Sbjct: 98  LQAELLEAWRNALQISIEEGGKVLEISGQLREQQREGKTTVDWRRVNWWEHGFVRRLELP 157

Query: 81  EDVDCCRIEAQMKNDTILEIKIPKLESNRGAESKSKD-SDQD 121
           ED D  R+EA++KND +LEIKIPKLE+N+ +ESKSKD SD+D
Sbjct: 158 EDADSSRMEARIKNDLVLEIKIPKLETNQSSESKSKDNSDED 199

[Close]

BLAST of CmoCh16G009150 vs. TAIR 10
Match: AT5G54660.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 21  IKYKIEKPWRNALQISVE-DGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELP 80
           +K  I    +N +Q+ V+ +G+V+EISGQ    ++ AT   DWR   WWEHG+VRRLELP
Sbjct: 100 LKSDIPVVGKNNVQVYVDINGRVMEISGQWNSNKKAATN-SDWRSGRWWEHGYVRRLELP 159

Query: 81  EDVDCCRIEAQMKND---TILEIKIPKLES 107
            D D    EA + N+   + LEI+IPK+ S
Sbjct: 160 SDADAKYSEAFLSNNDDYSFLEIRIPKINS 188

The following BLAST results are available for this feature:

BLAST of CmoCh16G009150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIT9	1.6e-13	45.56	21.7 kDa class VI heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP21.7 ...	[more]
Q6AUW3	5.3e-09	59.09	22.3 kDa class VI heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
P27397	4.7e-05	31.65	18.0 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1	[more]
Q84Q72	8.0e-05	34.18	18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
P31673	1.4e-04	35.00	17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]

BLAST of CmoCh16G009150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J4E5	8.7e-47	90.10	21.7 kDa class VI heat shock protein OS=Cucurbita maxima OX=3661 GN=LOC111483304...	[more]
H6TB45	1.0e-31	69.31	HSP23.0 OS=Citrullus lanatus OX=3654 PE=2 SV=1	[more]
A0A0A0L6D5	2.3e-31	69.61	SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G081340 PE=3 S...	[more]
A0A5D3C0M7	8.8e-31	68.63	21.7 kDa class VI heat shock protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3CJA6	8.8e-31	68.63	21.7 kDa class VI heat shock protein OS=Cucumis melo OX=3656 GN=LOC103501614 PE=...	[more]

BLAST of CmoCh16G009150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54660.1	1.1e-14	45.56	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 20..114 e-value: 8.5E-14 score: 53.5
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 31..108
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 30..109 e-value: 2.3E-9 score: 37.3
None	No IPR available	PANTHER	PTHR47838	21.7 KDA CLASS VI HEAT SHOCK PROTEIN	coord: 22..107
None	No IPR available	PANTHER	PTHR47838:SF1	21.7 KDA CLASS VI HEAT SHOCK PROTEIN	coord: 22..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G009150.1	CmoCh16G009150.1	mRNA