CmoCh16G008920 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G008920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NADH-ubiquinone oxidoreductase chain 4
Location	Cmo_Chr16: 5019679 .. 5020081 (+)
RNA-Seq Expression	CmoCh16G008920
Synteny	CmoCh16G008920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGCAACGGTTGGGGAGGCATTCGTAGAAGCGAAGCCTATCGCCACGCCGACCATCAAATACCGATCTTCTCAAAGATTTAATGGAATGGCCCCAAGAAAGAGCACTTATCTCAGTCATATGGGAACTCATGGCTGGAAACAATCCTTATGGTTTGATATCCGGTAGGAATAAGAAAAATCAAAGTCTAGGTTGGTTGGTGAGCCTAGTGATAGGAAAAACTATCTAGCTTGGTTCAGAGAGCACTTGTTGGGTTAAAGATTTTGTTGTTGCTAAATGTTACAGCCTAAATGCTAAACTATTGACCCTACTTGTTCGGATGGGTGTTCACCCCAAAGTGTTCCCGGACTACATGCATACATCCGTAAGTAACTTAGTGCAACATGGCAAATTTCATTGA

mRNA sequence

ATGTTTGCAACGGTTGGGGAGGCATTCGTAGAAGCGAAGCCTATCGCCACGCCGACCATCAAATACCGATCTTCTCAAAGATTTAATGGAATGGCCCCAAGAAAGAGCACTTATCTCAGTCATATGGGAACTCATGGCTGGAAACAATCCTTATGGTTTGATATCCGCCTAAATGCTAAACTATTGACCCTACTTGTTCGGATGGGTGTTCACCCCAAAGTGTTCCCGGACTACATGCATACATCCGTAAGTAACTTAGTGCAACATGGCAAATTTCATTGA

Coding sequence (CDS)

ATGTTTGCAACGGTTGGGGAGGCATTCGTAGAAGCGAAGCCTATCGCCACGCCGACCATCAAATACCGATCTTCTCAAAGATTTAATGGAATGGCCCCAAGAAAGAGCACTTATCTCAGTCATATGGGAACTCATGGCTGGAAACAATCCTTATGGTTTGATATCCGCCTAAATGCTAAACTATTGACCCTACTTGTTCGGATGGGTGTTCACCCCAAAGTGTTCCCGGACTACATGCATACATCCGTAAGTAACTTAGTGCAACATGGCAAATTTCATTGA

Protein sequence

MFATVGEAFVEAKPIATPTIKYRSSQRFNGMAPRKSTYLSHMGTHGWKQSLWFDIRLNAKLLTLLVRMGVHPKVFPDYMHTSVSNLVQHGKFH

Homology

[Close]

BLAST of CmoCh16G008920 vs. ExPASy Swiss-Prot
Match: Q04050 (NADH-ubiquinone oxidoreductase chain 4 OS=Brassica campestris OX=3711 GN=ND4 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-10
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 45  HGWKQSLWFDIRLNAKLLTLLVRMGVHPKVFPDYMHTSVSNLVQHGKFH 94
           H +  S   ++ +    L  LVRMGVHPKVFPD MHTSVSNLVQHGKFH
Sbjct: 447 HKFSDSNGREVSIFIPFLVGLVRMGVHPKVFPDCMHTSVSNLVQHGKFH 495

[Close]

BLAST of CmoCh16G008920 vs. ExPASy Swiss-Prot
Match: P93313 (NADH-ubiquinone oxidoreductase chain 4 OS=Arabidopsis thaliana OX=3702 GN=ND4 PE=1 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-07
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 65  LVRMGVHPKVFPDYMHTSVSNLVQHGKFH 94
           LV MGV+PKVF D MHTSVSNLVQHGKFH
Sbjct: 467 LVWMGVYPKVFLDCMHTSVSNLVQHGKFH 495

[Close]

BLAST of CmoCh16G008920 vs. ExPASy Swiss-Prot
Match: P27572 (NADH-ubiquinone oxidoreductase chain 4 OS=Triticum aestivum OX=4565 GN=ND4 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-06
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 65  LVRMGVHPKVFPDYMHTSVSNLVQHGKFH 94
           +V MGV+PKVF D MHTSVSNLVQHGKFH
Sbjct: 467 VVWMGVYPKVFLDCMHTSVSNLVQHGKFH 495

[Close]

BLAST of CmoCh16G008920 vs. ExPASy Swiss-Prot
Match: P26848 (NADH-ubiquinone oxidoreductase chain 4 OS=Marchantia polymorpha OX=3197 GN=ND4 PE=3 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 1.8e-04
Identity = 20/28 (71.43%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 65  LVRMGVHPKVFPDYMHTSVSNLVQHGKF 93
           ++ MGV+P+VF + MHTSVSNLVQHGKF
Sbjct: 467 VIWMGVYPEVFLECMHTSVSNLVQHGKF 494

[Close]

BLAST of CmoCh16G008920 vs. ExPASy TrEMBL
Match: A0A803MRN5 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 50/93 (53.76%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 1   MFATVGEAFVEAKPIATPTIKYRSSQRFNGM----APRKSTYLSHMGTHGWKQSLWFDIR 60
           +FAT G+A VEAKPIA PTIKY              P KS Y+      G      FDIR
Sbjct: 62  VFATAGKAVVEAKPIAPPTIKYEIGPLLQNWMEWPTPPKSAYVIWELMAG-NNPYGFDIR 121

Query: 61  ---LNAKLLTLLVRMGVHPKVFPDYMHTSVSNL 87
              LNA+LLTLLV MGVHPKVFPD MHTS S +
Sbjct: 122 CYGLNAELLTLLVWMGVHPKVFPDRMHTSSSRI 153

[Close]

BLAST of CmoCh16G008920 vs. ExPASy TrEMBL
Match: A0A7D7J9E2 (NADH-ubiquinone oxidoreductase chain 4 OS=Solanum torvum OX=119830 GN=nad4 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 57  LNAKLLTLLVRMGVHPKVFPDYMHTSVSNLVQHGKFH 94
           LNA+LLTLLVRMGVHPKVFPD MHTSVSNLVQHGKFH
Sbjct: 494 LNAELLTLLVRMGVHPKVFPDRMHTSVSNLVQHGKFH 530

[Close]

BLAST of CmoCh16G008920 vs. ExPASy TrEMBL
Match: A0A2G5DC13 (Proton_antipo_M domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02300075v1 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 57  LNAKLLTLLVRMGVHPKVFPDYMHTSVSNLVQHGKFH 94
           LNA+LLTLLVRMGVHPKVFPD MHTSVSNLVQHGKFH
Sbjct: 470 LNAELLTLLVRMGVHPKVFPDCMHTSVSNLVQHGKFH 506

[Close]

BLAST of CmoCh16G008920 vs. ExPASy TrEMBL
Match: V4KZJ7 (Proton_antipo_M domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015949mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 57  LNAKLLTLLVRMGVHPKVFPDYMHTSVSNLVQHGKFH 94
           LNA+LLTLLVRMGVHPKVFPD MHTSVSNLVQHGKFH
Sbjct: 215 LNAELLTLLVRMGVHPKVFPDCMHTSVSNLVQHGKFH 251

[Close]

BLAST of CmoCh16G008920 vs. ExPASy TrEMBL
Match: K3Z2I3 (Proton_antipo_M domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 57  LNAKLLTLLVRMGVHPKVFPDYMHTSVSNLVQHGKFH 94
           LNA+LLTLLVRMGVHPKVFPD MHTSVSNLVQHGKFH
Sbjct: 174 LNAELLTLLVRMGVHPKVFPDCMHTSVSNLVQHGKFH 210

[Close]

BLAST of CmoCh16G008920 vs. TAIR 10
Match: ATMG00580.1 (NADH dehydrogenase subunit 4 )

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 45  HGWKQSLWFDIRLNAKLLTLLVRMGVHPKVFPDYMHTSVSNLVQHGKFH 94
           H +  S   ++ +    L  LVRMGVHPKVFPD MHTSVSNLVQHGKFH
Sbjct: 447 HKFSDSNGREVSIFIPFLVGLVRMGVHPKVFPDCMHTSVSNLVQHGKFH 495

The following BLAST results are available for this feature:

BLAST of CmoCh16G008920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04050	3.7e-10	63.27	NADH-ubiquinone oxidoreductase chain 4 OS=Brassica campestris OX=3711 GN=ND4 PE=...	[more]
P93313	8.6e-07	86.21	NADH-ubiquinone oxidoreductase chain 4 OS=Arabidopsis thaliana OX=3702 GN=ND4 PE...	[more]
P27572	1.9e-06	82.76	NADH-ubiquinone oxidoreductase chain 4 OS=Triticum aestivum OX=4565 GN=ND4 PE=2 ...	[more]
P26848	1.8e-04	71.43	NADH-ubiquinone oxidoreductase chain 4 OS=Marchantia polymorpha OX=3197 GN=ND4 P...	[more]

BLAST of CmoCh16G008920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803MRN5	1.2e-11	53.76	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A7D7J9E2	1.0e-10	94.59	NADH-ubiquinone oxidoreductase chain 4 OS=Solanum torvum OX=119830 GN=nad4 PE=3 ...	[more]
A0A2G5DC13	1.0e-10	94.59	Proton_antipo_M domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQU...	[more]
V4KZJ7	1.0e-10	94.59	Proton_antipo_M domain-containing protein (Fragment) OS=Eutrema salsugineum OX=7...	[more]
K3Z2I3	1.0e-10	94.59	Proton_antipo_M domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1	[more]

BLAST of CmoCh16G008920 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00580.1	2.6e-11	63.27	NADH dehydrogenase subunit 4	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G008920.1	CmoCh16G008920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0070469	respirasome
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity