CmoCh16G008430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G008430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-type domain-containing protein
Location	Cmo_Chr16: 4449883 .. 4452517 (+)
RNA-Seq Expression	CmoCh16G008430
Synteny	CmoCh16G008430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCTCCACCTCTTAACCCTCCTCCTTCAATCCTCCCCTTCCTCACCTCCTTTTCGATCATAATCCTCATCTTCGTCTCCATTATCATCTTCTCCGTCCTCGCCTCCTTTGCCATCATCGTCCTCGTCTACTTCATTTGCAGATACCTAGTTCACCCAACTTATTTAGACGAACACGACCCTGTGCTCGTAGCGGATGAGAGAAACCAAAACCAAAGTCAGAGCACACGAACTAGGATTTTGGTATCTCATCCAACACGTCATGGTGGAGATGTAGAGAATGCATCATGGAGGGAGGGTTTGGAGAGGAAGGGGCTGAGAGAACAAGCTCTAGAGAAGACGACGACGGTGCTCGTGAGCTATGGCAGCTCGGAAGCGACCGCGAAATTCGTTGATTGTGCAATCTGTTTGGAGGATTTTGAAAAGGGAGAGCTTTGCCAGATTTTTCCAGTGTGTAATCATATTTTTCATTATTGTTGTATTCAACGTTGGTTGAAGAAGAACATGACTTGTCCCATTTGTCGTTGTTCTATTGAGTGACAAGTGCTGAGATTTGTATATATTTCAAACTTTTCATCCCATTGTTTCTAAAAATATATTAGTTTTTTCGAGTTTCTTTTCCACATTTCGAGTCGATGAATTGAAATTGGTTTGATTCGGGGTCGGTCGATCAACGATCCCAATAAGAGTTAAAACTCACCAAATCGATTGATTCTATTTACAGTTAACTATGCATGCAAGTCTCACAACCATATCAGAAAAGAATAAGTTTTAATTCTATTGGAGCAGGTAGTATAATGCATGTTTCTCAATGGACAAAGTAACGGATCGAGAGAGAAGTATTGTGATGTGACCAAGTGAGACGCTCAATGAGGATCAGGTGGGGTACGAGCCACAACCTTGAAAGTGAAAATTGAAGAAAAGGTGTTGCAACCAATAGAATCAAGAGGACAACGTTGAGATGCTGCTAACAACGTCTCGACACTCAAAATGCACCAAACAAGCCACATGACCAAAGACAATAGAATCGAAATGCTGCTCGAGTATGAAGATCTGAGGGATATTTGTATGATTCAATAATCCGACCAATTCAAACCACCCAACTTTGGATATATATTTTTTCAATTTAGGTTAGGTTGAATTTTTAGGTCCGTTTACGAGTTGATATTTTTTTGGTCAAGTCAACTTGACCAATTCGAGAATAGGGTTACAATCCAACTCAACCCAACCTTACCTTACTTTTTAAGATTATTATGAAGATTAAAAATATTTTACGTTTGTAATCAATGTTAGTGATACCTTGACTTATAAATATTTGATATTTGAATTTTATGAAATTTTAGTTATTAATGTAACATGTACGAGAGATAAAGTAATTTTTTTTAAATAATTAAAAAAAATTACAACCCGACAACTCAACTCGAGAAAAGAGGATTGGATTAGATTGGTTTATGAATTTTATTCGTATTATATTCACTAATTACATTAATTACATATGTTTTTTTTAGAGAAATAATCATAACTTCTAGCTTTCTCACGTCCTTATAAAAGTATTACCGTTGACGGGTTTCAAACAGAGACACCAACACCTTTTGGTAACACCCGATATTTTGAATTTTTTTAACCTTTCTTACCCCTTTTACTCGAAATCACATCTCCAACTTCCGTTAAGCTCACCCTTACTTCTCCTCGAAAATATGATGAACGTATCGAGCATTGTAATTTCATTAGTTAGCCCGACTTTAAATTAATCCAAGTTTTTGTTCCAAACTTACGAGAGCGTGTATGACAAACACCCAATCATATAATCGATACAGGTTATTGTTCTACAGGTACTTTACTCCCAAATTTATCGTTAATTACATGCAAATCAGACAAATTAATCTTTTTCAAATTTCGATGATAACAAGATTTAATTTCATACGTAACAAAAATCTTAAAACGGGTTTAACGTTTGTTCTTGTCGTTAGCTTTACAGATATAGTTTCTAAAACAAACGGGAAATTGTTACGAAACTAAAATCTTTTTATTTTTTTATATCAACAAAAATCACAAAAAAAAAAAAATGAAAAAGAAGAAGAACCATCAACCATGATTCTTCTTCATTTTCTCACCTCATTTTCCTTCATTTTCCCAGCATCCAAACAGCACAAGATCTGAGCTAATTAACAAACCAATACTCTTTCCCCTCCAAATTCTCATGCACATAATCGTCATCTTTGGCTTGTTCTTGATCATTCTTGTAATCCTCACCTTCTTCGCCTTGTGCCTTTACATTTGCTTCCAATGCTATAACCACGGCTTTCCCGAAGATGATTCAATCATCACTGAAAGTGGAGAATCGACGACGACCACGACGAGGGCGACATCGGTGGCGGTGGATTCCGATGAGATAAATCGCCATATTCAAATTGCGATGGAGAAATTGACGAAGCCATCGACGGAGTATGATTACGAGAAGGATAACGAAGCCGTGTCGGTGTTGAGTCAATGTGCTATATGTTTGGAAGAGTTCGAAAATACGGATTTGTGCCGTGTTTTTCCTAATTGCAAACATATGTTTCATACGCATTGCATAGTCCGTTGGTTAGGGATTAATCAAACTTGTCCGGTATGTCGGACTCAATTGTAG

mRNA sequence

ATGATCCCTCCACCTCTTAACCCTCCTCCTTCAATCCTCCCCTTCCTCACCTCCTTTTCGATCATAATCCTCATCTTCGTCTCCATTATCATCTTCTCCGTCCTCGCCTCCTTTGCCATCATCGTCCTCGTCTACTTCATTTGCAGATACCTAGTTCACCCAACTTATTTAGACGAACACGACCCTGTGCTCGTAGCGGATGAGAGAAACCAAAACCAAAGTCAGAGCACACGAACTAGGATTTTGGTATCTCATCCAACACGTCATGGTGGAGATGTAGAGAATGCATCATGGAGGGAGGGTTTGGAGAGGAAGGGGCTGAGAGAACAAGCTCTAGAGAAGACGACGACGGTGCTCGTGAGCTATGGCAGCTCGGAAGCGACCGCGAAATTCGTTGATTGTGCAATCTGTTTGGAGGATTTTGAAAAGGGAGAGCTTTGCCAGATTTTTCCACATCCAAACAGCACAAGATCTGAGCTAATTAACAAACCAATACTCTTTCCCCTCCAAATTCTCATGCACATAATCGTCATCTTTGGCTTGTTCTTGATCATTCTTGTAATCCTCACCTTCTTCGCCTTGTGCCTTTACATTTGCTTCCAATGCTATAACCACGGCTTTCCCGAAGATGATTCAATCATCACTGAAAGTGGAGAATCGACGACGACCACGACGAGGGCGACATCGGTGGCGGTGGATTCCGATGAGATAAATCGCCATATTCAAATTGCGATGGAGAAATTGACGAAGCCATCGACGGAGTATGATTACGAGAAGGATAACGAAGCCGTGTCGGTGTTGAGTCAATGTGCTATATGTTTGGAAGAGTTCGAAAATACGGATTTGTGCCGTGTTTTTCCTAATTGCAAACATATGTTTCATACGCATTGCATAGTCCGTTGGTTAGGGATTAATCAAACTTGTCCGGTATGTCGGACTCAATTGTAG

Coding sequence (CDS)

ATGATCCCTCCACCTCTTAACCCTCCTCCTTCAATCCTCCCCTTCCTCACCTCCTTTTCGATCATAATCCTCATCTTCGTCTCCATTATCATCTTCTCCGTCCTCGCCTCCTTTGCCATCATCGTCCTCGTCTACTTCATTTGCAGATACCTAGTTCACCCAACTTATTTAGACGAACACGACCCTGTGCTCGTAGCGGATGAGAGAAACCAAAACCAAAGTCAGAGCACACGAACTAGGATTTTGGTATCTCATCCAACACGTCATGGTGGAGATGTAGAGAATGCATCATGGAGGGAGGGTTTGGAGAGGAAGGGGCTGAGAGAACAAGCTCTAGAGAAGACGACGACGGTGCTCGTGAGCTATGGCAGCTCGGAAGCGACCGCGAAATTCGTTGATTGTGCAATCTGTTTGGAGGATTTTGAAAAGGGAGAGCTTTGCCAGATTTTTCCACATCCAAACAGCACAAGATCTGAGCTAATTAACAAACCAATACTCTTTCCCCTCCAAATTCTCATGCACATAATCGTCATCTTTGGCTTGTTCTTGATCATTCTTGTAATCCTCACCTTCTTCGCCTTGTGCCTTTACATTTGCTTCCAATGCTATAACCACGGCTTTCCCGAAGATGATTCAATCATCACTGAAAGTGGAGAATCGACGACGACCACGACGAGGGCGACATCGGTGGCGGTGGATTCCGATGAGATAAATCGCCATATTCAAATTGCGATGGAGAAATTGACGAAGCCATCGACGGAGTATGATTACGAGAAGGATAACGAAGCCGTGTCGGTGTTGAGTCAATGTGCTATATGTTTGGAAGAGTTCGAAAATACGGATTTGTGCCGTGTTTTTCCTAATTGCAAACATATGTTTCATACGCATTGCATAGTCCGTTGGTTAGGGATTAATCAAACTTGTCCGGTATGTCGGACTCAATTGTAG

Protein sequence

MIPPPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPVLVADERNQNQSQSTRTRILVSHPTRHGGDVENASWREGLERKGLREQALEKTTTVLVSYGSSEATAKFVDCAICLEDFEKGELCQIFPHPNSTRSELINKPILFPLQILMHIIVIFGLFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAVDSDEINRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCRTQL

Homology

[Close]

BLAST of CmoCh16G008430 vs. ExPASy Swiss-Prot
Match: Q8LF65 (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-10
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 269 QCAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCRTQL 316
           +C++CL EF++ +  RV PNCKH FH HCI  W   + +CP+CR+Q+
Sbjct: 75  ECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQI 121

[Close]

BLAST of CmoCh16G008430 vs. ExPASy Swiss-Prot
Match: Q7X843 (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 5.6e-10
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 270 CAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCRTQL 316
           CA+CL EF +TD  R+ P C H FH HCI  WL  N TCP+CR  L
Sbjct: 207 CAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252

[Close]

BLAST of CmoCh16G008430 vs. ExPASy Swiss-Prot
Match: Q9C7I1 (RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-09
Identity = 44/135 (32.59%), Postives = 58/135 (42.96%), Query Frame = 0


Query: 181 LFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAVDSDEINRH 240
           +  +++  L F  L   +C++  N       S   E G      TR TS  +  D IN  
Sbjct: 49  IIAMLMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVIN-- 108

Query: 241 IQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTHCIVR 300
                   + PS  Y   K  +      +CAICL EFE+ +  R+ P C H FH  CI  
Sbjct: 109 --------SFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDV 168

Query: 301 WLGINQTCPVCRTQL 316
           WL    TCPVCR  L
Sbjct: 169 WLSSRSTCPVCRASL 173

[Close]

BLAST of CmoCh16G008430 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 4.8e-09
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 269 QCAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCRT 314
           +CA+CL EFE ++  RV PNC+H FH  CI  W   + TCP+CR+
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162

[Close]

BLAST of CmoCh16G008430 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.8e-09
Identity = 31/82 (37.80%), Postives = 42/82 (51.22%), Query Frame = 0


Query: 232 VDSDEINRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKH 291
           +D D I  + +I   +   P+T              S CAICL +++   L R  P+C H
Sbjct: 122 LDEDTIQSYPKILYSEAKGPTT-------------ASCCAICLGDYKGKHLLRQLPDCNH 181

Query: 292 MFHTHCIVRWLGINQTCPVCRT 314
           +FH  CI  WL +N TCPVCRT
Sbjct: 182 LFHLKCIDTWLRLNPTCPVCRT 190

[Close]

BLAST of CmoCh16G008430 vs. ExPASy TrEMBL
Match: E5GBS2 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.4e-34
Identity = 91/160 (56.88%), Postives = 112/160 (70.00%), Query Frame = 0


Query: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPV 63
           P  NPPPSILPFLT+FSI+I+IF+SIIIFSV+ASFAII+ +Y IC+YL+  T LDEH   
Sbjct: 9   PQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGSTSLDEHVSD 68

Query: 64  LVADERNQNQSQSTRTRILVSH--PTRHGGDV----ENASWREGLERKGLREQALEKTTT 123
           L A E N+NQ    R+RIL++H   + HG D+    E+ +WREG+ER  + E+       
Sbjct: 69  LEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIEK-----VA 128

Query: 124 VLVSYGSSEATAKFVDCAICLEDFEKGELCQIFPHPNSTR 158
             VSYGSSE  AK +DCAICLEDFE GELCQ FP P   R
Sbjct: 129 APVSYGSSEVVAKCIDCAICLEDFENGELCQNFPLPPRRR 163

[Close]

BLAST of CmoCh16G008430 vs. ExPASy TrEMBL
Match: A0A5A7UZF7 (Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005240 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-33
Identity = 89/154 (57.79%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPV 63
           P  NPPPSILPFLT+FSI+I+IF+SIIIFSV+ASFAII+ +Y IC+YL+  T LDEH   
Sbjct: 9   PQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGSTSLDEHVSD 68

Query: 64  LVADERNQNQSQSTRTRILVSH--PTRHGGDV----ENASWREGLERKGLREQALEKTTT 123
           L A E N+NQ    R+RIL++H   + HG D+    E+ +WREG+ER  + E+       
Sbjct: 69  LEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIEK-----VA 128

Query: 124 VLVSYGSSEATAKFVDCAICLEDFEKGELCQIFP 152
             VSYGSSE  AK +DCAICLEDFE GELCQ FP
Sbjct: 129 APVSYGSSEVVAKCIDCAICLEDFENGELCQNFP 157

[Close]

BLAST of CmoCh16G008430 vs. ExPASy TrEMBL
Match: A0A5D3BTV2 (Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00260 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-33
Identity = 89/154 (57.79%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPV 63
           P  NPPPSILPFLT+FSI+I+IF+SIIIFSV+ASFAII+ +Y IC+YL+  T LDEH   
Sbjct: 9   PQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGSTSLDEHVSD 68

Query: 64  LVADERNQNQSQSTRTRILVSH--PTRHGGDV----ENASWREGLERKGLREQALEKTTT 123
           L A E N+NQ    R+RIL++H   + HG D+    E+ +WREG+ER  + E+       
Sbjct: 69  LEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIEK-----VA 128

Query: 124 VLVSYGSSEATAKFVDCAICLEDFEKGELCQIFP 152
             VSYGSSE  AK +DCAICLEDFE GELCQ FP
Sbjct: 129 APVSYGSSEVVAKCIDCAICLEDFENGELCQNFP 157

[Close]

BLAST of CmoCh16G008430 vs. ExPASy TrEMBL
Match: A0A0A0L6M6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104950 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.2e-32
Identity = 88/154 (57.14%), Postives = 109/154 (70.78%), Query Frame = 0


Query: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPV 63
           P  NPPPSILPFLT+FSI+I+IF++IIIFSV+ASFAIIV +Y IC+YL+  T LD H   
Sbjct: 9   PQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGSTSLDGHSSN 68

Query: 64  LVADERNQNQSQSTRTRILVSH--PTRHGGDV----ENASWREGLERKGLREQALEKTTT 123
           L A E N+NQ   TR+RIL++H   + HG D+    E+ +WRE +ER  + E+       
Sbjct: 69  LEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIEK-----VA 128

Query: 124 VLVSYGSSEATAKFVDCAICLEDFEKGELCQIFP 152
             VSYGSSEA  K +DCAICLEDFE GELCQ FP
Sbjct: 129 APVSYGSSEAATKCIDCAICLEDFENGELCQNFP 157

[Close]

BLAST of CmoCh16G008430 vs. ExPASy TrEMBL
Match: A0A0A0L7Y8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104940 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-20
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 236 EINRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHT 295
           E NR +Q+AMEKLTKPS  Y+ E+++E+ S LS+C ICLE+      CRVFPNCKH+FHT
Sbjct: 7   ERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHT 66

Query: 296 HCIVRWLGINQTCPV 311
           HCI+ WL INQTCP+
Sbjct: 67  HCIINWLEINQTCPI 81

[Close]

BLAST of CmoCh16G008430 vs. NCBI nr
Match: KAG7027690.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.0 bits (933), Expect = 1.3e-96
Identity = 212/269 (78.81%), Postives = 215/269 (79.93%), Query Frame = 0


Query: 1   MIPPPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEH 60
           MIPPPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEH
Sbjct: 1   MIPPPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEH 60

Query: 61  DPVLVADERNQNQSQSTRTRILVSHPTRHGGDVENASWREGLERKGLREQALEKTTTVLV 120
           DP+LVADERNQNQSQSTRTRILVSHPTRHGGDVENASWREGLERKGLREQALEKTTTVLV
Sbjct: 61  DPILVADERNQNQSQSTRTRILVSHPTRHGGDVENASWREGLERKGLREQALEKTTTVLV 120

Query: 121 SYGSSEATAKFVDCAICLEDFEKGELCQIFPHPNSTRSELINKPILFPLQILMHIIVIFG 180
           SYGSSEATAKFVDCAICLEDFEKGELCQIFP                   +  HI     
Sbjct: 121 SYGSSEATAKFVDCAICLEDFEKGELCQIFP-------------------VCNHIF---- 180

Query: 181 LFLIILVILTFFALCLYICFQCY---NHGFPE-DDSIITESGESTTTTTRATSVAVDSDE 240
                           Y C Q +   N   P   DSIITESGESTTTTTRATSVAVDSDE
Sbjct: 181 ---------------HYCCIQRWLKKNMTCPICHDSIITESGESTTTTTRATSVAVDSDE 231

Query: 241 INRHIQIAMEKLTKPSTEYDYEKDNEAVS 266
           INRHIQIAMEKLTKPSTEYDYEKDNEAVS
Sbjct: 241 INRHIQIAMEKLTKPSTEYDYEKDNEAVS 231

[Close]

BLAST of CmoCh16G008430 vs. NCBI nr
Match: KAG6577374.1 (RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.7 bits (735), Expect = 1.2e-73
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 173 MHIIVIFGLFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAV 232
           MHIIVIFGLFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAV
Sbjct: 1   MHIIVIFGLFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAV 60

Query: 233 DSDEINRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHM 292
           DS+EINRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHM
Sbjct: 61  DSNEINRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHM 120

Query: 293 FHTHCIVRWLGINQTCPVCRTQL 316
           FHTHCIVRWLGINQTCPVCRTQL
Sbjct: 121 FHTHCIVRWLGINQTCPVCRTQL 143

[Close]

BLAST of CmoCh16G008430 vs. NCBI nr
Match: KAG6577373.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 284.6 bits (727), Expect = 1.0e-72
Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MIPPPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEH 60
           MIPPPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFIC+YLVHPTYLDEH
Sbjct: 1   MIPPPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICKYLVHPTYLDEH 60

Query: 61  DPVLVADERNQNQSQSTRTRILVSHPTRHGGDVENASWREGLERKGLREQALEKTTTVLV 120
           DPVLVADERNQNQSQSTRTRILVSHPTRHGGDVENASWREGLERKGLREQAL+KTTTVLV
Sbjct: 61  DPVLVADERNQNQSQSTRTRILVSHPTRHGGDVENASWREGLERKGLREQALKKTTTVLV 120

Query: 121 SYGSSEATAKFVDCAICLEDFEKGELCQIFP 152
           SYGSSEATAKFVDCAICLEDFEKGELCQIFP
Sbjct: 121 SYGSSEATAKFVDCAICLEDFEKGELCQIFP 151

[Close]

BLAST of CmoCh16G008430 vs. NCBI nr
Match: KAG7031368.1 (RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 267.7 bits (683), Expect = 1.3e-67
Identity = 158/319 (49.53%), Postives = 199/319 (62.38%), Query Frame = 0


Query: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPV 63
           P  NPPPS LPFLT+FSI+I+I +SI+IFS+LASF+II+ ++ +C+YL+  T LD H   
Sbjct: 10  PQSNPPPSTLPFLTAFSIVIVIIISIVIFSILASFSIIIFIFVLCQYLIGSTNLDGHHLD 69

Query: 64  LVADERNQNQSQSTRTRILVSHPTRHGGDVENASWREGL-----ERKGLREQALEKTTTV 123
           + A ERNQNQ+Q+ R R LVS         E+  WRE L     ERKG R Q + K  T 
Sbjct: 70  VEAGERNQNQNQTMRGRSLVSR-------YESNIWREALERTMAERKGRRAQIVMKMAT- 129

Query: 124 LVSYGSSEATAKFVDCAICLEDFEKGELCQIFPHPNSTRSELINKPILFPLQILMHIIVI 183
            V YG SE  AK+ DCAICLE+FE GE CQIF    +T+               M IIV+
Sbjct: 130 RVRYGCSEVAAKYTDCAICLEEFENGEDCQIFVVIQTTQQ--------------MPIIVL 189

Query: 184 FGLFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAVDSDEIN 243
           FG  L +LV+ +FF+LC+YICFQC+  GF        ++G    T     +  V+ +E+N
Sbjct: 190 FGFVLTVLVLFSFFSLCIYICFQCHTQGFIGATQTHRDNGHGMATRAATRAATVNPEELN 249

Query: 244 RHIQIAMEKLTKPSTEYD-YEKDNE-AVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTH 303
                 MEKLT P  +Y   E D E A S L++CAICLE F N   CRVFPNCKHMFHTH
Sbjct: 250 HQTHRVMEKLTMPLVDYGCKENDGEVASSELNECAICLEAFGNRVSCRVFPNCKHMFHTH 306

Query: 304 CIVRWLGINQTCPVCRTQL 316
           CI++WLGIN TCP+CRT L
Sbjct: 310 CIIKWLGINLTCPICRTHL 306

[Close]

BLAST of CmoCh16G008430 vs. NCBI nr
Match: XP_011652743.1 (uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical protein Csa_011552 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 4.2e-63
Identity = 151/319 (47.34%), Postives = 190/319 (59.56%), Query Frame = 0


Query: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPV 63
           P  NPPPSILPFLT+FSI+I+IF++IIIFSV+ASFAIIV +Y IC+YL+  T LD H   
Sbjct: 9   PQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGSTSLDGHSSN 68

Query: 64  LVADERNQNQSQSTRTRILVSH--PTRHGGDV----ENASWREGLERKGLREQALEKTTT 123
           L A E N+NQ   TR+RIL++H   + HG D+    E+ +WRE +ER  + E+       
Sbjct: 69  LEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIEK-----VA 128

Query: 124 VLVSYGSSEATAKFVDCAICLEDFEKGELCQIFPHPNSTRSELINKPILFPLQILMHIIV 183
             VSYGSSEA  K +DCAICLEDFE GELCQ FP                          
Sbjct: 129 APVSYGSSEAATKCIDCAICLEDFENGELCQNFP-------------------------- 188

Query: 184 IFGLFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGEST-TTTTRATSVAVDSDE 243
                                       GF E +     + E T TTTT AT++  D +E
Sbjct: 189 ----------------------------GFSESEQRGNRNEEMTMTTTTVATTMVADPEE 248

Query: 244 INRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTH 303
            NR +Q+AMEKLTKPS  Y+ E+++E+ S LS+C ICLE+      CRVFPNCKH+FHTH
Sbjct: 249 RNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTH 268

Query: 304 CIVRWLGINQTCPVCRTQL 316
           CI+ WL INQTCP+CRT+L
Sbjct: 309 CIINWLEINQTCPICRTKL 268

[Close]

BLAST of CmoCh16G008430 vs. TAIR 10
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-11
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 270 CAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCRTQL 316
           CA+CL EF +TD  R+ P C H FH HCI  WL  N TCP+CR  L
Sbjct: 207 CAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252

[Close]

BLAST of CmoCh16G008430 vs. TAIR 10
Match: AT1G35330.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-10
Identity = 44/135 (32.59%), Postives = 58/135 (42.96%), Query Frame = 0


Query: 181 LFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAVDSDEINRH 240
           +  +++  L F  L   +C++  N       S   E G      TR TS  +  D IN  
Sbjct: 49  IIAMLMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVIN-- 108

Query: 241 IQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTHCIVR 300
                   + PS  Y   K  +      +CAICL EFE+ +  R+ P C H FH  CI  
Sbjct: 109 --------SFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDV 168

Query: 301 WLGINQTCPVCRTQL 316
           WL    TCPVCR  L
Sbjct: 169 WLSSRSTCPVCRASL 173

[Close]

BLAST of CmoCh16G008430 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-10
Identity = 31/82 (37.80%), Postives = 42/82 (51.22%), Query Frame = 0


Query: 232 VDSDEINRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKH 291
           +D D I  + +I   +   P+T              S CAICL +++   L R  P+C H
Sbjct: 122 LDEDTIQSYPKILYSEAKGPTT-------------ASCCAICLGDYKGKHLLRQLPDCNH 181

Query: 292 MFHTHCIVRWLGINQTCPVCRT 314
           +FH  CI  WL +N TCPVCRT
Sbjct: 182 LFHLKCIDTWLRLNPTCPVCRT 190

[Close]

BLAST of CmoCh16G008430 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-10
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 269 QCAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCRT 314
           +CA+CL EFE ++  RV PNC+H FH  CI  W   + TCP+CR+
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162

[Close]

BLAST of CmoCh16G008430 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 5.8e-10
Identity = 39/133 (29.32%), Postives = 61/133 (45.86%), Query Frame = 0


Query: 183 LIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAVDSDEINRHIQ 242
           +++++I   F +  +  +  +  G P D  +    G  +  T  A +  +D   +     
Sbjct: 52  IVVILIAALFFMGFFSIYFRHCSGVP-DAGVSPAGGARSRATVNAAARGLDVSVVE---- 111

Query: 243 IAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTHCIVRWL 302
                 T P+  Y   K  +      +CAICL EFE+ +  R+ P C H+FH HCI  WL
Sbjct: 112 ------TFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWL 171

Query: 303 GINQTCPVCRTQL 316
             + TCPVCR  L
Sbjct: 172 EAHVTCPVCRANL 173

The following BLAST results are available for this feature:

BLAST of CmoCh16G008430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LF65	4.3e-10	48.94	RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2	[more]
Q7X843	5.6e-10	56.52	RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2	[more]
Q9C7I1	2.1e-09	32.59	RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1	[more]
Q8L9T5	4.8e-09	51.11	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q8RX29	4.8e-09	37.80	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]

BLAST of CmoCh16G008430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GBS2	3.4e-34	56.88	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7UZF7	2.2e-33	57.79	Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BTV2	2.2e-33	57.79	Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0L6M6	4.2e-32	57.14	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104950 P...	[more]
A0A0A0L7Y8	1.3e-20	62.67	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104940 P...	[more]

BLAST of CmoCh16G008430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027690.1	1.3e-96	78.81	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6577374.1	1.2e-73	99.30	RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6577373.1	1.0e-72	98.68	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7031368.1	1.3e-67	49.53	RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_011652743.1	4.2e-63	47.34	uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical ...	[more]

BLAST of CmoCh16G008430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48030.1	4.0e-11	56.52	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family ...	[more]
AT1G35330.1	1.5e-10	32.59	RING/U-box superfamily protein	[more]
AT2G35910.1	3.4e-10	37.80	RING/U-box superfamily protein	[more]
AT3G16720.1	3.4e-10	51.11	TOXICOS EN LEVADURA 2	[more]
AT3G05200.1	5.8e-10	29.32	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 270..311 e-value: 1.5E-6 score: 37.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 269..312 e-value: 2.1E-12 score: 47.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 270..312 score: 13.108904
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 229..315 e-value: 1.6E-19 score: 71.4
None	No IPR available	PANTHER	PTHR45798:SF62	RING-H2 FINGER PROTEIN ATL3-LIKE	coord: 16..152
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 16..152
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 167..313
None	No IPR available	PANTHER	PTHR45798:SF62	RING-H2 FINGER PROTEIN ATL3-LIKE	coord: 167..313
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 269..315

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G008430.1	CmoCh16G008430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane