CmoCh16G007970 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G007970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor bHLH25-like
Location	Cmo_Chr16: 4058128 .. 4059910 (+)
RNA-Seq Expression	CmoCh16G007970
Synteny	CmoCh16G007970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAAGAAGAACAAGATTCATCGTTGCTATTTCATGATCAGTATCAATTATTCAACGCCACCCCCACCTCCGATTCACCTCCATTATTCAACCACTGGCGGTCTTGCGGTGGCTCAGCGGCCGTGGCATCTTCATCGTCTCAGATGATCTTATTTCAGGAGGGTAAGTTTTGTCCGGCGGCGGCTGAGATTTGGCCGTTGGTTAATGTTGGTAGAAATCCGCCGCGTGCTAAAGATCACGTTCTGGCTGAGAGGAAACGCCGGGAGAAACTCAGCCAGAGATTCATTGCTCTTTCAGCCCTCTTACCTGGCCTTAAGAAGGTACCCAAATTATACTAATTTTACCTTTAATTAGGCATAATATGGAATCATCAGCTATAAGTTTTCCCGACTTTACTTTTGAGTATTCTCAAAAAGTCCTCGTACTCATAGAAATTCTTTATAAACTCATGAACCTTCTTTAAATTAGCTTACGCTCAAAGTGAATAATCATATCATTGTGGAGAGTCAGTGATTCTTTACTTATAAACCCACGACCATACCTTTACGTTAGCCATGTCGATAGAATTCTCAGATTTTGAACAAAGAATTGTGACCCTCGAAGGTGTAGTCAAAAGTGACTAAAATATCAAACAAAATGTGTACTTTGTTTGAAGGCTCAAGAGAAAGAGTCGAGTCTCGATTAAGGGGAGACTGTTCTAGGGCTCCATAGACCTCGGAGGAGGCTCTATGATGTACTTTGTTCGAGAAGAGAATTGGTGAGACGGAGTCCCACATTGATTAATTAAGAGGATGATCATGGGTTTATAAGCAACGAGGTCTACCTAATGCTAGATGTAAAGGCGCATAATAGATCGATATGAATAAAACCTGTTGTTGCTGATACTTTTGTCTCGGTTCCTTCTTCCATAACGGAGAAGGAAGAGGATAGACTATAGAAACAGACATCTCTTATCTCAATGACCACCGGTATATTAAATGAATGGAATTGGGATATGGATGGAATACAATGAAATAGAGCCATTTTGAGGTTCTCTATGAAATGGGACATGAAACGGGGCATGAAACGGAGCCACTACGAAGAAATACATCTCCATTGGGGCAAAGTCACGAAAGTTTATGGCTCAAAATAGACAATATCATATTGTTACGAGATTCATGATTGACCCATATCCATGATAGATTCATTATTATAATTTGTTTTACAGATGGATAAAGCCTCAATTCTAGGAGATGCAATCAAGTACATAAAACAGCTACAAGAACGTGTGGAATCACTAGAGGAAATGGGCAAGAACAGCAACATTGAATCAGCCATTTTCATAAAGAAATCCCATTTATGTAACAACATGAATGGTTGTTGTGATGATATTGATGGCGAAGAACACAATCACAAAACTGGATTTTCCGACCAAAAACTAGTGGAAATGGAAGCCAAAATCTCAGACAAACATGTTCTTGTTCGAATCCACTGTGAGAAACATGAGGGTTTGTTGGCGAAGTTATTAGAGGAAATGGAGAAGCTGAATTTTAAGATCATTAATGGCAATGTCTTCCCCTTTGGCAGCTCAACCCAATATATGGTTTTTCTTCTTCAGGTTCCTTCTAACACCATCTCTTATTCAATTAATTCCGTGAATTTATGCATCCAAGTACCATTTTTTCGATCTAATTATGAATATATTCTCTTTCGTTGCAGAGAAATTCGGACTTTAATATAGAATCAAAAGAGCTCGTACGAAAGTTAGAAGATGAATTGTTCAAGTTCATAACAACATAA

mRNA sequence

ATGATGGAAGAAGAACAAGATTCATCGTTGCTATTTCATGATCAGTATCAATTATTCAACGCCACCCCCACCTCCGATTCACCTCCATTATTCAACCACTGGCGGTCTTGCGGTGGCTCAGCGGCCGTGGCATCTTCATCGTCTCAGATGATCTTATTTCAGGAGGGTAAGTTTTGTCCGGCGGCGGCTGAGATTTGGCCGTTGGTTAATGTTGGTAGAAATCCGCCGCGTGCTAAAGATCACGTTCTGGCTGAGAGGAAACGCCGGGAGAAACTCAGCCAGAGATTCATTGCTCTTTCAGCCCTCTTACCTGGCCTTAAGAAGGTTCCTTCTAACACCATCTCTTATTCAATTAATTCCAGAAATTCGGACTTTAATATAGAATCAAAAGAGCTCGTACGAAAGTTAGAAGATGAATTGTTCAAGTTCATAACAACATAA

Coding sequence (CDS)

ATGATGGAAGAAGAACAAGATTCATCGTTGCTATTTCATGATCAGTATCAATTATTCAACGCCACCCCCACCTCCGATTCACCTCCATTATTCAACCACTGGCGGTCTTGCGGTGGCTCAGCGGCCGTGGCATCTTCATCGTCTCAGATGATCTTATTTCAGGAGGGTAAGTTTTGTCCGGCGGCGGCTGAGATTTGGCCGTTGGTTAATGTTGGTAGAAATCCGCCGCGTGCTAAAGATCACGTTCTGGCTGAGAGGAAACGCCGGGAGAAACTCAGCCAGAGATTCATTGCTCTTTCAGCCCTCTTACCTGGCCTTAAGAAGGTTCCTTCTAACACCATCTCTTATTCAATTAATTCCAGAAATTCGGACTTTAATATAGAATCAAAAGAGCTCGTACGAAAGTTAGAAGATGAATTGTTCAAGTTCATAACAACATAA

Protein sequence

MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCPAAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFNIESKELVRKLEDELFKFITT

Homology

[Close]

BLAST of CmoCh16G007970 vs. ExPASy Swiss-Prot
Match: Q1PF16 (Transcription factor bHLH19 OS=Arabidopsis thaliana OX=3702 GN=BHLH19 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-09
Identity = 39/71 (54.93%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 73  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFN------ 132
           R+P  AK+HVLAERKRREKLS++FIALSALLPGLKK    TI     SR           
Sbjct: 112 RSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAISRMKQLQEQLRTL 171

Query: 133 IESKELVRKLE 138
            E KE  R++E
Sbjct: 172 KEEKEATRQME 182

[Close]

BLAST of CmoCh16G007970 vs. ExPASy Swiss-Prot
Match: Q9T072 (Transcription factor bHLH25 OS=Arabidopsis thaliana OX=3702 GN=BHLH25 PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-08
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 73  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI 115
           RN   A+DH++AERKRREKL+QRF+ALSAL+PGLKK+   ++
Sbjct: 145 RNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASV 186

[Close]

BLAST of CmoCh16G007970 vs. ExPASy Swiss-Prot
Match: Q1PF17 (Transcription factor bHLH18 OS=Arabidopsis thaliana OX=3702 GN=BHLH18 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-08
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 73  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI 115
           R+   A+DH+LAERKRREKL+QRF+ALSAL+PGLKK+   ++
Sbjct: 119 RSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASV 160

[Close]

BLAST of CmoCh16G007970 vs. ExPASy Swiss-Prot
Match: Q8S3F1 (Transcription factor NAI1 OS=Arabidopsis thaliana OX=3702 GN=NAI1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 73  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFNIESKEL 132
           R P   K+HVLAERKRR+KL++R IALSALLPGLKK    T+             + +E 
Sbjct: 125 REPHLLKEHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLK----QLQER 184

Query: 133 VRKLEDE 140
           V+KLE+E
Sbjct: 185 VKKLEEE 187

[Close]

BLAST of CmoCh16G007970 vs. ExPASy TrEMBL
Match: A0A6J1ETR4 (transcription factor bHLH25-like OS=Cucurbita moschata OX=3662 GN=LOC111435876 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.8e-54
Identity = 116/149 (77.85%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 1   MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP 60
           MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP
Sbjct: 1   MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP 60

Query: 61  AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK-----VPSNTIS 120
           AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK     +  + I 
Sbjct: 61  AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKMDKASILGDAIK 120

Query: 121 Y---------SINSRNSDFNIESKELVRK 136
           Y         S+     + NIES   ++K
Sbjct: 121 YIKQLQERVESLEEMGKNSNIESAIFIKK 149

[Close]

BLAST of CmoCh16G007970 vs. ExPASy TrEMBL
Match: A0A6J1JCQ1 (transcription factor bHLH25-like OS=Cucurbita maxima OX=3661 GN=LOC111483221 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.2e-51
Identity = 115/151 (76.16%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 1   MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP 60
           MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRS GGSAA+ASSSSQMILFQEGKFCP
Sbjct: 1   MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSYGGSAALASSSSQMILFQEGKFCP 60

Query: 61  --AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK-----VPSNT 120
             AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK     +  + 
Sbjct: 61  VAAAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKMDKASILGDA 120

Query: 121 ISY---------SINSRNSDFNIESKELVRK 136
           I Y         S+     + NIES  L++K
Sbjct: 121 IKYIKQLQERVESLEEMGKNSNIESAILIKK 151

[Close]

BLAST of CmoCh16G007970 vs. ExPASy TrEMBL
Match: V7CES6 (BHLH domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G231200g PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 69  VNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI 115
           V + RNP +A+DHV+AERKRREKLSQRFIALSAL+PGLKK+   T+
Sbjct: 177 VTMARNPTQAQDHVIAERKRREKLSQRFIALSALVPGLKKMDKATV 222

[Close]

BLAST of CmoCh16G007970 vs. ExPASy TrEMBL
Match: A0A0L9TPS2 (BHLH domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g201200 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.5e-08
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 69  VNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI 115
           V + RNP +A+DHV+AERKRREKLSQRFIALSAL+PGLKK    T+
Sbjct: 160 VTMARNPTQAQDHVIAERKRREKLSQRFIALSALVPGLKKTDKATV 205

[Close]

BLAST of CmoCh16G007970 vs. ExPASy TrEMBL
Match: A0A0S3R5E3 (BHLH domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G364000 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.5e-08
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 69  VNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI 115
           V + RNP +A+DHV+AERKRREKLSQRFIALSAL+PGLKK    T+
Sbjct: 174 VTMARNPTQAQDHVIAERKRREKLSQRFIALSALVPGLKKTDKATV 219

[Close]

BLAST of CmoCh16G007970 vs. NCBI nr
Match: XP_022929215.1 (transcription factor bHLH25-like [Cucurbita moschata])

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 116/149 (77.85%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 1   MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP 60
           MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP
Sbjct: 1   MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP 60

Query: 61  AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK-----VPSNTIS 120
           AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK     +  + I 
Sbjct: 61  AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKMDKASILGDAIK 120

Query: 121 Y---------SINSRNSDFNIESKELVRK 136
           Y         S+     + NIES   ++K
Sbjct: 121 YIKQLQERVESLEEMGKNSNIESAIFIKK 149

[Close]

BLAST of CmoCh16G007970 vs. NCBI nr
Match: XP_022985138.1 (transcription factor bHLH25-like [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 6.5e-51
Identity = 115/151 (76.16%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 1   MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP 60
           MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRS GGSAA+ASSSSQMILFQEGKFCP
Sbjct: 1   MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSYGGSAALASSSSQMILFQEGKFCP 60

Query: 61  --AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK-----VPSNT 120
             AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK     +  + 
Sbjct: 61  VAAAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKMDKASILGDA 120

Query: 121 ISY---------SINSRNSDFNIESKELVRK 136
           I Y         S+     + NIES  L++K
Sbjct: 121 IKYIKQLQERVESLEEMGKNSNIESAILIKK 151

[Close]

BLAST of CmoCh16G007970 vs. NCBI nr
Match: XP_023552894.1 (transcription factor bHLH25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-50
Identity = 114/151 (75.50%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 2   MEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP- 61
           ME EQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP 
Sbjct: 1   MEGEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCPA 60

Query: 62  --AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK-----VPSNT 121
             AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK     +  + 
Sbjct: 61  AAAAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKMDKASILGDA 120

Query: 122 ISY---------SINSRNSDFNIESKELVRK 136
           I Y         S+     + NIE+  L++K
Sbjct: 121 IKYIKQLQERVESLEEMGKNSNIEAAILIKK 151

[Close]

BLAST of CmoCh16G007970 vs. NCBI nr
Match: KAG6577330.1 (Transcription factor basic helix-loop-helix 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-50
Identity = 115/149 (77.18%), Postives = 121/149 (81.21%), Query Frame = 0


Query: 2   MEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP- 61
           MEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRS GGSAAVASSSSQMILFQEGKFCP 
Sbjct: 1   MEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSGGGSAAVASSSSQMILFQEGKFCPA 60

Query: 62  AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK-----VPSNTIS 121
           AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK     +  + I 
Sbjct: 61  AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKMDKASILGDAIK 120

Query: 122 Y---------SINSRNSDFNIESKELVRK 136
           Y         S+     + NIES  L++K
Sbjct: 121 YIKQLQERVESLEEMGKNSNIESAILIKK 149

[Close]

BLAST of CmoCh16G007970 vs. NCBI nr
Match: KAG7015418.1 (Transcription factor bHLH25, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-16
Identity = 55/89 (61.80%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 61  AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK-----VPSNTIS 120
           A+AEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK     +  + I 
Sbjct: 6   ASAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKMDKASILGDAIK 65

Query: 121 Y---------SINSRNSDFNIESKELVRK 136
           Y         S+     + NIES   ++K
Sbjct: 66  YIKQLQERVESLEEMGKNSNIESAIFIKK 94

[Close]

BLAST of CmoCh16G007970 vs. TAIR 10
Match: AT2G22760.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10
Identity = 39/71 (54.93%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 73  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFN------ 132
           R+P  AK+HVLAERKRREKLS++FIALSALLPGLKK    TI     SR           
Sbjct: 112 RSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAISRMKQLQEQLRTL 171

Query: 133 IESKELVRKLE 138
            E KE  R++E
Sbjct: 172 KEEKEATRQME 182

[Close]

BLAST of CmoCh16G007970 vs. TAIR 10
Match: AT4G37850.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-09
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 73  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI 115
           RN   A+DH++AERKRREKL+QRF+ALSAL+PGLKK+   ++
Sbjct: 145 RNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASV 186

[Close]

BLAST of CmoCh16G007970 vs. TAIR 10
Match: AT2G22750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-09
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 73  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI 115
           R+   A+DH+LAERKRREKL+QRF+ALSAL+PGLKK+   ++
Sbjct: 119 RSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASV 160

[Close]

BLAST of CmoCh16G007970 vs. TAIR 10
Match: AT2G22750.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-09
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 73  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI 115
           R+   A+DH+LAERKRREKL+QRF+ALSAL+PGLKK+   ++
Sbjct: 119 RSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASV 160

[Close]

BLAST of CmoCh16G007970 vs. TAIR 10
Match: AT2G22770.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 73  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFNIESKEL 132
           R P   K+HVLAERKRR+KL++R IALSALLPGLKK    T+             + +E 
Sbjct: 125 REPHLLKEHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLK----QLQER 184

Query: 133 VRKLEDE 140
           V+KLE+E
Sbjct: 185 VKKLEEE 187

The following BLAST results are available for this feature:

BLAST of CmoCh16G007970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PF16	2.9e-09	54.93	Transcription factor bHLH19 OS=Arabidopsis thaliana OX=3702 GN=BHLH19 PE=1 SV=1	[more]
Q9T072	3.2e-08	64.29	Transcription factor bHLH25 OS=Arabidopsis thaliana OX=3702 GN=BHLH25 PE=2 SV=2	[more]
Q1PF17	5.5e-08	64.29	Transcription factor bHLH18 OS=Arabidopsis thaliana OX=3702 GN=BHLH18 PE=1 SV=1	[more]
Q8S3F1	2.1e-07	50.75	Transcription factor NAI1 OS=Arabidopsis thaliana OX=3702 GN=NAI1 PE=2 SV=1	[more]

BLAST of CmoCh16G007970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETR4	6.8e-54	77.85	transcription factor bHLH25-like OS=Cucurbita moschata OX=3662 GN=LOC111435876 P...	[more]
A0A6J1JCQ1	3.2e-51	76.16	transcription factor bHLH25-like OS=Cucurbita maxima OX=3661 GN=LOC111483221 PE=...	[more]
V7CES6	1.9e-08	71.74	BHLH domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G231200...	[more]
A0A0L9TPS2	2.5e-08	71.74	BHLH domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g20...	[more]
A0A0S3R5E3	2.5e-08	71.74	BHLH domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vi...	[more]

BLAST of CmoCh16G007970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929215.1	1.4e-53	77.85	transcription factor bHLH25-like [Cucurbita moschata]	[more]
XP_022985138.1	6.5e-51	76.16	transcription factor bHLH25-like [Cucurbita maxima]	[more]
XP_023552894.1	1.1e-50	75.50	transcription factor bHLH25-like [Cucurbita pepo subsp. pepo]	[more]
KAG6577330.1	1.1e-50	77.18	Transcription factor basic helix-loop-helix 25, partial [Cucurbita argyrosperma ...	[more]
KAG7015418.1	1.8e-16	61.80	Transcription factor bHLH25, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]

BLAST of CmoCh16G007970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22760.1	2.1e-10	54.93	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G37850.1	2.3e-09	64.29	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G22750.1	3.9e-09	64.29	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G22750.2	3.9e-09	64.29	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G22770.1	1.5e-08	50.75	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 69..140 e-value: 6.4E-6 score: 28.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 73..107
None	No IPR available	PANTHER	PTHR45959	BHLH TRANSCRIPTION FACTOR	coord: 38..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G007970.1	CmoCh16G007970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity